Archive 4 checkpoints (1-4)
Browse files- paper-releases/pbisc-diffusion/updates/20261012T130738Z-strictpairs-implementation/diffusion/dataset/server_1/model8/plans/paper_figures_strictpairs_20261012/archive/20261012T130738Z-strictpairs-implementation/snapshot/scores_pilot/diffusion_only/score/arms/pairedcal/labels/labels.parquet +3 -0
- paper-releases/pbisc-diffusion/updates/20261012T130738Z-strictpairs-implementation/diffusion/dataset/server_1/model8/plans/paper_figures_strictpairs_20261012/archive/20261012T130738Z-strictpairs-implementation/snapshot/scores_pilot/diffusion_only/score/arms/pairedcal/predict_scanvi.log +84 -0
- paper-releases/pbisc-diffusion/updates/20261012T130738Z-strictpairs-implementation/diffusion/dataset/server_1/model8/plans/paper_figures_strictpairs_20261012/archive/20261012T130738Z-strictpairs-implementation/snapshot/scores_pilot/diffusion_only/score/per_donor.csv +45 -0
- paper-releases/pbisc-diffusion/updates/20261012T130738Z-strictpairs-implementation/diffusion/dataset/server_1/model8/plans/paper_figures_strictpairs_20261012/archive/20261012T130738Z-strictpairs-implementation/snapshot/scores_pilot/diffusion_only/score/summary.json +334 -0
paper-releases/pbisc-diffusion/updates/20261012T130738Z-strictpairs-implementation/diffusion/dataset/server_1/model8/plans/paper_figures_strictpairs_20261012/archive/20261012T130738Z-strictpairs-implementation/snapshot/scores_pilot/diffusion_only/score/arms/pairedcal/labels/labels.parquet
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paper-releases/pbisc-diffusion/updates/20261012T130738Z-strictpairs-implementation/diffusion/dataset/server_1/model8/plans/paper_figures_strictpairs_20261012/archive/20261012T130738Z-strictpairs-implementation/snapshot/scores_pilot/diffusion_only/score/arms/pairedcal/predict_scanvi.log
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[34mINFO [0m File
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[35m/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/pla[0m
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[35mns/aifi_scanvi_rebuild_20260916/runs/aifi_scanvi_f01common_v1/scanvi_mo[0m
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[35mdel/[0m[95mmodel.pt[0m already downloaded
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[34mINFO [0m File
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[35mns/aifi_scanvi_rebuild_20260916/runs/aifi_scanvi_f01common_v1/scanvi_mo[0m
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[35mdel/[0m[95mmodel.pt[0m already downloaded
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[35mdel/[0m[95mmodel.pt[0m already downloaded
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{
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"method": "pairedcal",
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"n_cells": 33000,
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"n_genes": 1005,
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"label_counts": {
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"celltype_l1_pred": {
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"T cell": 23776,
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"Monocyte": 3976,
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"B cell": 2675,
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"NK cell": 1698,
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"Other": 500,
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"DC": 375
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},
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"aifi_l1": {
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"T cell": 23776,
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"Monocyte": 3976,
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"B cell": 2675,
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"NK cell": 1698,
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"DC": 375,
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"Platelet": 163,
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"ILC": 157,
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"Erythrocyte": 131,
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"Progenitor cell": 49
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},
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"aifi_l2": {
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"Memory CD4 T cell": 5925,
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"Naive CD4 T cell": 5884,
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"Memory CD8 T cell": 3434,
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"gdT": 3058,
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"CD14 monocyte": 3030,
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"Naive CD8 T cell": 2341,
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"Memory B cell": 1851,
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"Treg": 1480,
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"CD56dim NK cell": 1210,
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"CD8aa": 666,
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"CD16 monocyte": 583,
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"Naive B cell": 517,
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"DN T cell": 513,
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"MAIT": 468,
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"CD56bright NK cell": 416,
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"Intermediate monocyte": 363,
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"cDC2": 303,
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"Effector B cell": 240,
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"Platelet": 163,
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"ILC": 157,
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"Erythrocyte": 131,
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"Proliferating NK cell": 72,
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"pDC": 57,
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"Progenitor cell": 49,
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"Transitional B cell": 39,
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"Plasma cell": 28,
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"cDC1": 9,
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"Proliferating T cell": 7,
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"ASDC": 6
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}
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},
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"confidence": {
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| 71 |
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"mean_l2_max_prob": 0.9126860870389324,
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| 72 |
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"mean_l1_mass": 0.985178530216217,
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| 73 |
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"frac_l2_max_prob_ge_0.5": 0.9709696969696969
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},
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"timings_s": {
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"predict": 0.4,
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"total": 0.7
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},
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"subset": false
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}
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-> /home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/scores_pilot/diffusion_only/score/arms/pairedcal/labels/labels.parquet
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--- stderr ---
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Seed set to 20260916
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paper-releases/pbisc-diffusion/updates/20261012T130738Z-strictpairs-implementation/diffusion/dataset/server_1/model8/plans/paper_figures_strictpairs_20261012/archive/20261012T130738Z-strictpairs-implementation/snapshot/scores_pilot/diffusion_only/score/per_donor.csv
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arm,donor,group,n_generated_cells,n_observed_cells,n_reference_cells,gen_T cell,obs_T cell,gen_B cell,obs_B cell,gen_Monocyte,obs_Monocyte,gen_NK cell,obs_NK cell,gen_DC,obs_DC,gen_Other,obs_Other,comp_l1,comp_l1_obs_loo_null,pb_r,pb_own_rank,pb_top1,precision,coverage,precision_depth_matched,coverage_depth_matched,mono_pct_gen,mono_pct_obs,median_umi_gen,median_umi_obs
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| 19 |
+
lora,HS86,DB7,1500,1111,150,0.6653333333333333,0.6561656165616562,0.054,0.0711071107110711,0.17666666666666667,0.162016201620162,0.04733333333333333,0.0711071107110711,0.04,0.034203420342034205,0.016666666666666666,0.0054005400540054005,0.08176177617761776,0.07179394704932163,0.8896841490889289,20,False,0.9933333333333333,0.8666666666666667,0.9933333333333333,0.9866666666666667,17.666666666666668,16.2016201620162,2383.5,1989.0
|
| 20 |
+
lora,HS95,DB1,1500,4264,150,0.6913333333333334,0.6458724202626641,0.152,0.08348968105065666,0.08733333333333333,0.13860225140712945,0.03,0.09826454033771106,0.03133333333333333,0.025093808630393996,0.008,0.008677298311444653,0.24042151344590376,0.09728161934908136,0.9075058752365502,2,False,0.9933333333333333,0.9866666666666667,1.0,0.9866666666666667,8.733333333333333,13.860225140712945,2940.5,1829.5
|
| 21 |
+
lora,HS98,DB2,1500,4959,150,0.5013333333333333,0.5366001209921355,0.037333333333333336,0.07360354910264166,0.32,0.30490018148820325,0.07266666666666667,0.03891913692276669,0.062,0.03367614438394838,0.006666666666666667,0.012300867110304496,0.15434240774349672,0.3008904548210157,0.9120319968996317,1,True,1.0,0.9866666666666667,1.0,0.9933333333333333,32.0,30.490018148820326,2695.0,1606.0
|
| 22 |
+
lora,HS101,DB4,1500,6549,150,0.7426666666666667,0.6659031913269201,0.052,0.051152847763017255,0.10733333333333334,0.192090395480226,0.04733333333333333,0.05939838143227974,0.046,0.026721636891128418,0.004666666666666667,0.004733547106428463,0.19377798137120175,0.08013023802852969,0.9014457269446418,9,False,0.9866666666666667,0.94,1.0,0.98,10.733333333333334,19.2090395480226,2196.0,1960.0
|
| 23 |
+
lora,HS107,DB1,1500,4445,150,0.816,0.7313835770528684,0.09333333333333334,0.031496062992125984,0.05333333333333334,0.14195725534308212,0.02,0.0686164229471316,0.015333333333333332,0.02002249718785152,0.002,0.006524184476940383,0.2929073865766778,0.19608442509403828,0.8951057064601959,1,True,0.9933333333333333,0.9933333333333333,0.9933333333333333,1.0,5.333333333333334,14.195725534308213,3260.0,1849.0
|
| 24 |
+
pairedcal,HS3,DB3,1500,4617,150,0.752,0.6484730344379467,0.08466666666666667,0.06952566601689408,0.1,0.17782109594975093,0.034666666666666665,0.07060862031622266,0.012,0.028589993502274202,0.016666666666666666,0.004981589776911414,0.26070608620316227,0.04060118700472884,0.878638369080518,5,False,0.9666666666666667,0.86,0.9866666666666667,0.9666666666666667,10.0,17.782109594975093,2490.0,2186.0
|
| 25 |
+
pairedcal,HS6,DB3,1500,4222,150,0.5526666666666666,0.4836570345807674,0.046,0.037423022264329704,0.26666666666666666,0.3147797252486973,0.092,0.13003315963998105,0.016,0.024869729985788725,0.02666666666666667,0.009237328280435813,0.19003189641560075,0.3824588765473767,0.893146556117052,7,False,0.9933333333333333,0.76,0.9733333333333334,0.9666666666666667,26.666666666666668,31.47797252486973,2208.5,2457.5
|
| 26 |
+
pairedcal,HS7,DB1,1500,4271,150,0.7613333333333333,0.7035822992273473,0.07933333333333334,0.03839850152189183,0.08666666666666667,0.13135097166939827,0.043333333333333335,0.09740107703114025,0.012,0.02130648560056193,0.017333333333333333,0.0079606649496605,0.21611706860220084,0.17462025766050882,0.8827974279163722,4,False,1.0,0.96,1.0,0.9933333333333333,8.666666666666668,13.135097166939827,2508.0,1748.0
|
| 27 |
+
pairedcal,HS13,DB5,1500,4792,150,0.6993333333333334,0.6156093489148581,0.07533333333333334,0.056343906510851416,0.16,0.2166110183639399,0.037333333333333336,0.08764607679465776,0.012,0.02003338898163606,0.016,0.0037562604340567614,0.2299143016138008,0.07950263318013584,0.8798271507205752,12,False,0.98,0.54,0.98,0.8666666666666667,16.0,21.66110183639399,2729.0,2176.0
|
| 28 |
+
pairedcal,HS18,DB4,1500,3348,150,0.7733333333333333,0.6633811230585425,0.06866666666666667,0.05734767025089606,0.11533333333333333,0.18309438470728792,0.02,0.07198327359617682,0.008666666666666666,0.016129032258064516,0.014,0.008064516129032258,0.2544133811230585,0.056830454472214534,0.8686336738829321,9,False,1.0,0.62,0.9866666666666667,0.8666666666666667,11.533333333333333,18.309438470728793,2511.5,2108.0
|
| 29 |
+
pairedcal,HS31,DB3,1500,4830,150,0.7173333333333334,0.5956521739130435,0.09133333333333334,0.07039337474120083,0.106,0.21884057971014492,0.058666666666666666,0.08385093167701864,0.01,0.02546583850931677,0.016666666666666666,0.005797101449275362,0.30698136645962737,0.08982859354260735,0.8796020439023781,7,False,0.9866666666666667,0.76,0.9933333333333333,0.9266666666666666,10.6,21.884057971014492,2241.0,2217.5
|
| 30 |
+
pairedcal,HS34,DB5,1500,4363,150,0.7706666666666667,0.7073114829245931,0.08466666666666667,0.04859041943616777,0.10266666666666667,0.16983726793490717,0.021333333333333333,0.0550080220032088,0.011333333333333334,0.013981205592482237,0.009333333333333334,0.005271602108640843,0.20698632439452985,0.14554772243505307,0.8748532822694218,8,False,0.9866666666666667,0.5666666666666667,0.9933333333333333,0.86,10.266666666666667,16.983726793490717,2588.0,2176.0
|
| 31 |
+
pairedcal,HS37,DB6,1500,2127,150,0.606,0.5763986835919135,0.13866666666666666,0.14997649271274094,0.14933333333333335,0.18288669487541137,0.06533333333333333,0.06535025858015985,0.016666666666666666,0.021626704278326282,0.024,0.0037611659614480487,0.09968030089327688,0.17642904039178112,0.8806076293985569,16,False,0.9866666666666667,0.5333333333333333,0.9933333333333333,0.7933333333333333,14.933333333333335,18.28866948754114,2288.5,2099.0
|
| 32 |
+
pairedcal,HS38,DB2,1500,3952,150,0.658,0.4534412955465587,0.05466666666666667,0.06022267206477733,0.178,0.27631578947368424,0.08333333333333333,0.16776315789473684,0.015333333333333332,0.03365384615384615,0.010666666666666666,0.00860323886639676,0.4132442645074225,0.3979973492276381,0.8870424531078367,9,False,0.9933333333333333,0.7933333333333333,0.9866666666666667,0.8933333333333333,17.8,27.631578947368425,2198.0,1448.0
|
| 33 |
+
pairedcal,HS52,DB1,1500,4286,150,0.7733333333333333,0.7473168455436304,0.08133333333333333,0.04316378908072795,0.062,0.12085860942603827,0.05733333333333333,0.06276248250116659,0.012,0.017498833411105925,0.014,0.008399440037330844,0.1395731840099549,0.23339752310597672,0.8869303171158586,2,False,0.9733333333333334,0.9733333333333334,0.9666666666666667,0.9866666666666667,6.2,12.085860942603826,2597.0,1848.5
|
| 34 |
+
pairedcal,HS58,DB7,1500,1299,150,0.7566666666666667,0.6605080831408776,0.032,0.029253271747498075,0.09333333333333334,0.15550423402617397,0.096,0.1170130869899923,0.010666666666666666,0.03156274056966898,0.011333333333333334,0.006158583525789068,0.2081601231716705,0.13904887966629118,0.8785530142713879,9,False,1.0,0.58,0.9866666666666667,0.88,9.333333333333334,15.550423402617398,2076.0,1944.0
|
| 35 |
+
pairedcal,HS60,DB6,1500,2659,150,0.7506666666666667,0.6288078224896577,0.051333333333333335,0.04061677322301617,0.084,0.16058668672433246,0.09066666666666667,0.14328694998119593,0.008,0.020308386611508085,0.015333333333333332,0.006393380970289583,0.2830307133007397,0.12991818939150382,0.8759352175094927,13,False,1.0,0.58,1.0,0.8533333333333334,8.4,16.058668672433246,2450.5,2014.0
|
| 36 |
+
pairedcal,HS66,DB4,1500,4857,150,0.688,0.6448424953675108,0.12066666666666667,0.10376775787523163,0.11,0.16512250360304714,0.052,0.07020794729256744,0.012666666666666666,0.012559192917438749,0.016666666666666666,0.0035001029442042414,0.1466609017912291,0.09427105876197542,0.8726799768366125,12,False,0.98,0.6,0.9933333333333333,0.92,11.0,16.512250360304716,2484.5,2041.0
|
| 37 |
+
pairedcal,HS81,DB7,1500,1638,150,0.838,0.721001221001221,0.06266666666666666,0.04212454212454213,0.064,0.13553113553113552,0.022,0.06288156288156288,0.004666666666666667,0.03296703296703297,0.008666666666666666,0.005494505494505495,0.2814261294261294,0.19387054279631524,0.8640855389956563,8,False,0.9933333333333333,0.5266666666666666,0.9933333333333333,0.8066666666666666,6.4,13.553113553113553,3033.5,2240.5
|
| 38 |
+
pairedcal,HS82,DB2,1500,4201,150,0.7573333333333333,0.6553201618662223,0.134,0.1309212092358962,0.068,0.14782194715543917,0.024,0.031183051654368008,0.006,0.02499404903594382,0.010666666666666666,0.009759581052130446,0.211998095691502,0.18293033059828231,0.874433319043258,3,False,0.9933333333333333,0.9333333333333333,0.9866666666666667,0.9666666666666667,6.800000000000001,14.782194715543916,2804.0,1587.0
|
| 39 |
+
pairedcal,HS83,DB6,1500,2410,150,0.6966666666666667,0.7128630705394191,0.09733333333333333,0.08049792531120332,0.158,0.14481327800829877,0.02666666666666667,0.045228215767634854,0.008666666666666666,0.012448132780082987,0.012666666666666666,0.004149377593360996,0.07707883817427386,0.1880345194642001,0.8819918384871022,8,False,0.9866666666666667,0.5933333333333334,0.9733333333333334,0.8266666666666667,15.8,14.481327800829877,2558.5,2373.0
|
| 40 |
+
pairedcal,HS85,DB5,1500,4216,150,0.6953333333333334,0.5785104364326376,0.07533333333333334,0.07756166982922201,0.156,0.22936432637571158,0.05,0.0896584440227704,0.012,0.021347248576850095,0.011333333333333334,0.003557874762808349,0.24919671094244156,0.13514298327096805,0.8725282338434255,16,False,0.9866666666666667,0.5066666666666667,1.0,0.8333333333333334,15.6,22.93643263757116,2371.5,2171.5
|
| 41 |
+
pairedcal,HS86,DB7,1500,1111,150,0.728,0.6561656165616562,0.06266666666666666,0.0711071107110711,0.10866666666666666,0.162016201620162,0.072,0.0711071107110711,0.014,0.034203420342034205,0.014666666666666666,0.0054005400540054005,0.16398679867986796,0.07179394704932163,0.8783640282034064,15,False,0.9933333333333333,0.6733333333333333,0.9866666666666667,0.8866666666666667,10.866666666666665,16.2016201620162,2385.5,1989.0
|
| 42 |
+
pairedcal,HS95,DB1,1500,4264,150,0.6953333333333334,0.6458724202626641,0.15933333333333333,0.08348968105065666,0.082,0.13860225140712945,0.034666666666666665,0.09826454033771106,0.01,0.025093808630393996,0.018666666666666668,0.008677298311444653,0.2705878674171358,0.09728161934908136,0.8853636642211193,1,True,0.98,0.9933333333333333,0.9866666666666667,1.0,8.200000000000001,13.860225140712945,2772.0,1829.5
|
| 43 |
+
pairedcal,HS98,DB2,1500,4959,150,0.5686666666666667,0.5366001209921355,0.056,0.07360354910264166,0.26266666666666666,0.30490018148820325,0.06466666666666666,0.03891913692276669,0.016,0.03367614438394838,0.032,0.012300867110304496,0.15502641661625327,0.3008904548210157,0.8936560869009,1,True,0.9866666666666667,0.88,0.9733333333333334,0.94,26.266666666666666,30.490018148820326,2059.5,1606.0
|
| 44 |
+
pairedcal,HS101,DB4,1500,6549,150,0.7606666666666667,0.6659031913269201,0.07,0.051152847763017255,0.098,0.192090395480226,0.054,0.05939838143227974,0.011333333333333334,0.026721636891128418,0.006,0.004733547106428463,0.2297541609406017,0.08013023802852969,0.874524303036176,10,False,0.9866666666666667,0.72,0.98,0.88,9.8,19.2090395480226,2031.5,1960.0
|
| 45 |
+
pairedcal,HS107,DB1,1500,4445,150,0.8513333333333334,0.7313835770528684,0.05733333333333333,0.031496062992125984,0.03933333333333333,0.14195725534308212,0.032,0.0686164229471316,0.01,0.02002249718785152,0.01,0.006524184476940383,0.2985256842894639,0.19608442509403828,0.8756668292184767,1,True,1.0,0.9866666666666667,0.9866666666666667,1.0,3.933333333333333,14.195725534308213,3243.0,1849.0
|
paper-releases/pbisc-diffusion/updates/20261012T130738Z-strictpairs-implementation/diffusion/dataset/server_1/model8/plans/paper_figures_strictpairs_20261012/archive/20261012T130738Z-strictpairs-implementation/snapshot/scores_pilot/diffusion_only/score/summary.json
ADDED
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| 1 |
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| 2 |
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| 3 |
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| 4 |
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| 5 |
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| 6 |
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| 7 |
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| 8 |
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| 9 |
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| 10 |
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| 11 |
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