Archive 4 checkpoints (1-4)

paper-releases/pbisc-diffusion/updates/20261015T141849Z-rare-cell-7k-8k-panels/diffusion/dataset/server_1/model8/plans/rare_gene_context_expansion_20261015/panels/7k/selection_manifest.json

@@ -0,0 +1,100 @@
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+  "status": "research_candidate_only_no_training_or_active_config_change",
+  "n_selected_genes": 7000,
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+  "gene_id_key": "Ensembl stable ID; duplicate biological symbols are distinct loci, flagged separately",
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+      "path": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/rare_gene_context_expansion_20261015/build_panels.py",
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+  "legacy_loader_compatible_manifest": false,
+  "loader_gate": "The existing explicit_train_only_hvg_manifest loader rejects this evidence-driven selector. A reviewed loader/manifest extension is required before training; do not disguise it as train-only HVG.",
+  "gene_selection_expression_scope": "frozen pretraining-train-only HVG statistics; no local held-out expression accessed",
+  "literature_scope": "includes benchmark-author endpoint-informed markers; not fully independent unbiased feature selection",
+  "priority_policy": "core first; fair population and source-program round robin among supporting blood and bounded disease lists; optional stimulation then optional tissue; eligible train-only HVG backfill only if needed",
+  "known_limitations": [
+    "A source-defined program is a candidate feature list, not a complete or sufficient identity test",
+    "1M sampled detection is not population-specific, not full-corpus abundance, and zero is inconclusive",
+    "Official HGNC snapshot fetched 2026-10-15; raw canonical axis remains the existing project freeze",
+    "Raw-unavailable genes require new preprocessing and cannot be appended as zero-valued columns"
+  ]
+}