Archive 4 checkpoints (1-4)
Browse files- paper-releases/pbisc-diffusion/updates/20261015T121654Z-x1-nine-core40-deck/diffusion/dataset/server_1/model8/presentations/2026-09-30--paper-summary--r00/data/x1_priority_20261015/builds/20261015T120743086141Z/sources/19a936be6bccaeeb/score.json +52 -0
- paper-releases/pbisc-diffusion/updates/20261015T121654Z-x1-nine-core40-deck/diffusion/dataset/server_1/model8/presentations/2026-09-30--paper-summary--r00/data/x1_priority_20261015/builds/20261015T120743086141Z/sources/6c8cfe4d3942d813/metrics.csv +25 -0
- paper-releases/pbisc-diffusion/updates/20261015T121654Z-x1-nine-core40-deck/diffusion/dataset/server_1/model8/presentations/2026-09-30--paper-summary--r00/data/x1_priority_20261015/builds/20261015T120743086141Z/sources/92f207b9823f92d3/manifest.json +562 -0
- paper-releases/pbisc-diffusion/updates/20261015T121654Z-x1-nine-core40-deck/diffusion/dataset/server_1/model8/presentations/2026-09-30--paper-summary--r00/data/x1_priority_20261015/builds/20261015T120743086141Z/sources/aed7be0481fd0389/manifest.json +626 -0
paper-releases/pbisc-diffusion/updates/20261015T121654Z-x1-nine-core40-deck/diffusion/dataset/server_1/model8/presentations/2026-09-30--paper-summary--r00/data/x1_priority_20261015/builds/20261015T120743086141Z/sources/19a936be6bccaeeb/score.json
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{
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"state": "completed",
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"stage": "score",
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"at": "2026-10-15T11:59:57.996216+00:00",
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"outputs": [
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{
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"path": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/recoveries/x1_priority_completion_20261015/evaluation/units/immicro/healthy/fold0/n20/lora/score/arms/lora/generated_cells.parquet",
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"path": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/recoveries/x1_priority_completion_20261015/evaluation/units/immicro/healthy/fold0/n20/lora/score/per_donor.csv",
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"bytes": 9189
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{
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"path": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/recoveries/x1_priority_completion_20261015/evaluation/units/immicro/healthy/fold0/n20/lora/score/summary.json",
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"bytes": 7567
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{
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"path": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/recoveries/x1_priority_completion_20261015/evaluation/units/immicro/healthy/fold0/n20/lora/scoring_support.json",
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"bytes": 2096
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],
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"support_sha256": "52b20ff9322e8bf850bd0092fb61a1ad1bdbf6304ddd2b7b654ef90fe8009e7e",
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"binding": {
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"arm": "lora",
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"npz": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/generated/immicro/healthy/fold0/n20/lora.npz",
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"npz_sha256": "e378b2f0aa4200acf0446d5f24ec28518542cb898a6acf8c85c88759fa82715e",
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"receipt": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/generated/immicro/healthy/fold0/n20/lora.log",
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"receipt_sha256": "571b938fd2e358325edf7059fd1a72ce0f6224659017f593b970506621b9846f",
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"source_binding": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/runs/immicro/healthy/fold0/n20/lora/RUN.json",
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"source_binding_sha256": "c00cf5ca89861ee049da76aa30762187d7f31fafcdb0fd513254bfe2a69c3dd3",
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"condition_npz": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/data/immicro/healthy/fold0/n20/test_raw.npz",
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"condition_sha256": "51ad5b8f668b55d80d2f8d275a3a2a9b56f7daa768d6b607dcea4b7379465f60",
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"checkpoint_sha256": "2594ae6dcbc48adb48ef22db78dee6ddc7787045404a952a4c013c14ae3fbdcd",
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"support_sha256": "52b20ff9322e8bf850bd0092fb61a1ad1bdbf6304ddd2b7b654ef90fe8009e7e"
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},
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"reuse": {}
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}
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paper-releases/pbisc-diffusion/updates/20261015T121654Z-x1-nine-core40-deck/diffusion/dataset/server_1/model8/presentations/2026-09-30--paper-summary--r00/data/x1_priority_20261015/builds/20261015T120743086141Z/sources/6c8cfe4d3942d813/metrics.csv
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dataset,design,unit,label,set,real_side,mode,n_real,n_gen,precision_k3,coverage_k3,density_k3,expected_coverage_identical_k3,precision_k5,coverage_k5,density_k5,expected_coverage_identical_k5,precision_k10,coverage_k10,density_k10,expected_coverage_identical_k10,c2st_knn_auc,c2st_knn_auc_sd,c2st_rf_auc,c2st_rf_auc_sd,nn1_acc,nn1_acc_real,nn1_acc_gen,mmd2_bw0.5,mmd2_bw1,mmd2_bw2,mmd2_sum,mmd_bandwidth_m,seconds
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| 2 |
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ye2026_sepsis,scored,strict,Real vs real control (held-out real cells),real_R2,R1,raw,11550,11550,0.8768831168831169,0.9262337662337662,1.3393939393939396,0.8750324682351671,0.9391341991341992,0.9858874458874459,1.329090909090909,0.9687702904505108,0.9816450216450217,0.9999134199134199,1.3056103896103894,0.9990257609379009,0.5170200895785312,0.008240455326922505,0.5945192368958601,0.004164234328352939,0.5075757575757576,0.4244155844155844,0.5907359307359308,0.00010562996959201376,1.9689981132886558e-05,-2.3326363602915734e-06,0.00012298731436460875,27.91515930403532,39.4
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| 3 |
+
ye2026_sepsis,scored,strict,Real vs real control (held-out real cells),real_R2,R1,dm,11550,11550,0.8697835497835498,0.9255411255411256,1.3366522366522366,0.8750324682351671,0.9361904761904762,0.9868398268398269,1.3185800865800865,0.9687702904505108,0.9798268398268398,0.9995670995670995,1.3005194805194804,0.9990257609379009,0.5137144918573491,0.004774636067774291,0.5914903956072786,0.007461236121028792,0.5079220779220779,0.4238961038961039,0.591948051948052,0.00010245130095010158,1.993919497311758e-05,-2.3967698243865243e-06,0.00011999372609883263,27.91515930403532,38.8
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| 4 |
+
ye2026_sepsis,scored,strict,Real vs real control (out-of-sample: R2 vs R3),real_R3,R2,raw,11550,11550,,,,,,,,,,,,,0.501422743201964,0.011181500062233365,0.4992749948464234,0.0023330449158689404,0.5021645021645021,0.49653679653679655,0.5077922077922078,-6.229000470564516e-05,-3.957847794988645e-05,-1.3518403110701627e-05,-0.00011538688576623324,27.91515930403532,35.5
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| 5 |
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ye2026_sepsis,scored,strict,Real vs real control (out-of-sample: R2 vs R3),real_R3,R2,dm,11550,11550,,,,,,,,,,,,,0.4990301156275182,0.009395450485972272,0.5052111654579188,0.008387066893480549,0.5023809523809524,0.4973160173160173,0.5074458874458875,-6.480339091141651e-05,-3.939722047174854e-05,-1.2991151039365434e-05,-0.00011719176242253049,27.91515930403532,35.4
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| 6 |
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ye2026_sepsis,scored,strict,,lora,R1,raw,11550,11550,0.6722943722943723,0.47748917748917746,0.7382972582972583,0.8750324682351671,0.7898701298701298,0.5991341991341992,0.7737142857142858,0.9687702904505108,0.9091774891774892,0.750995670995671,0.8238874458874459,0.9990257609379009,0.9216308727347687,0.003775774505987093,0.9393669159123705,0.003961696167601357,0.8216017316017316,0.7616450216450217,0.8815584415584415,0.03435284376972819,0.019700935760182503,0.006197153848176207,0.0602509333780869,27.91515930403532,27.8
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| 7 |
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ye2026_sepsis,scored,strict,,lora,R1,dm,11550,11550,0.7452813852813853,0.59004329004329,1.1335642135642134,0.8750324682351671,0.8464935064935065,0.7124675324675325,1.1541991341991342,0.9687702904505108,0.9335064935064935,0.8428571428571429,1.1852900432900433,0.9990257609379009,0.8796357077266169,0.004189681749954189,0.9108155769194731,0.0015829599481709208,0.7751515151515151,0.683030303030303,0.8672727272727273,0.028344119195836792,0.016671836580448574,0.005430840244123214,0.05044679602040858,27.91515930403532,28.8
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| 8 |
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ye2026_sepsis,scored,strict,,lora,R2,raw,11550,11550,,,,,,,,,,,,,0.921885346976256,0.0021748973687498218,0.9366270497179588,0.0033330968677411656,0.82,0.800952380952381,0.839047619047619,0.03179264490583167,0.01895146034524009,0.0061015613279293834,0.05684566657900114,27.91515930403532,25.6
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| 9 |
+
ye2026_sepsis,scored,strict,,lora,R2,dm,11550,11550,,,,,,,,,,,,,0.875937988418508,0.00372708737909493,0.9068840726373194,0.005219212170109561,0.770952380952381,0.7090909090909091,0.8328138528138528,0.02706512407514583,0.016330606211888643,0.005353478989752469,0.04874920927678694,27.91515930403532,26.3
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| 10 |
+
ye2026_sepsis,scored,strict,,pairedcal,R1,raw,11550,11550,0.6090909090909091,0.22554112554112554,0.4791630591630592,0.8750324682351671,0.7588744588744589,0.307012987012987,0.5192034632034632,0.9687702904505108,0.9036363636363637,0.44043290043290045,0.5552467532467532,0.9990257609379009,0.9809079477521037,0.0015872607271053547,0.986440527726242,0.0015657028304912016,0.9325108225108225,0.8971428571428571,0.9678787878787879,0.0684152937021466,0.0380936537081884,0.011689308346575444,0.11819825575691045,27.91515930403532,27.6
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| 11 |
+
ye2026_sepsis,scored,strict,,pairedcal,R1,dm,11550,11550,0.671948051948052,0.4020779220779221,0.761991341991342,0.8750324682351671,0.7858874458874459,0.5125541125541125,0.7894025974025973,0.9687702904505108,0.9041558441558442,0.6696969696969697,0.8427619047619048,0.9990257609379009,0.9589484267536216,0.0020077812879816972,0.9732247709000955,0.001791363493198458,0.8761904761904762,0.800952380952381,0.9514285714285714,0.049203537151541576,0.028998110218797057,0.009549214902307757,0.08775086227264639,27.91515930403532,27.8
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| 12 |
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ye2026_sepsis,scored,strict,,pairedcal,R2,raw,11550,11550,,,,,,,,,,,,,0.9828176383501057,0.002530196159848629,0.9873074530087518,0.0011069159045179176,0.9372727272727273,0.9212987012987013,0.9532467532467532,0.06761878638453483,0.03791844772352526,0.0117482721631883,0.1172855062712484,27.91515930403532,25.9
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| 13 |
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ye2026_sepsis,scored,strict,,pairedcal,R2,dm,11550,11550,,,,,,,,,,,,,0.9620800022488336,0.003711152078600621,0.9743556342647253,0.0017696282127151787,0.8825974025974026,0.8296103896103896,0.9355844155844156,0.04940966999731011,0.029153528758139258,0.009589949155459188,0.08815314791090856,27.91515930403532,26.2
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| 14 |
+
ye2026_sepsis,scored,strict,,scsemi,R1,raw,11550,11550,0.4782683982683983,0.0438961038961039,0.2522077922077922,0.8750324682351671,0.6117748917748917,0.06017316017316017,0.2545800865800866,0.9687702904505108,0.782077922077922,0.08493506493506493,0.24903896103896103,0.9990257609379009,0.9966275182249209,0.0008337036233734891,0.9993664099248514,0.00015865573607180884,0.9875757575757576,0.9791341991341991,0.996017316017316,0.2683840501530215,0.17206490858775148,0.05757553579179642,0.4980244945325694,27.91515930403532,27.4
|
| 15 |
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ye2026_sepsis,scored,strict,,scsemi,R1,dm,11550,11550,0.3252813852813853,0.07298701298701299,0.18115440115440115,0.8750324682351671,0.4406060606060606,0.10432900432900433,0.18611255411255412,0.9687702904505108,0.5984415584415584,0.16095238095238096,0.19367965367965367,0.9990257609379009,0.9939249077041286,0.001148630534993705,0.9987039036000075,0.0003343695188084546,0.9802597402597403,0.9678787878787879,0.9926406926406927,0.180182178499937,0.11085149421820173,0.03695129941351882,0.32798497213165756,27.91515930403532,28.8
|
| 16 |
+
ye2026_sepsis,scored,strict,,scsemi,R2,raw,11550,11550,,,,,,,,,,,,,0.997273102078297,0.0006539898097180933,0.9995025018271771,0.00020966571302903674,0.9905627705627705,0.9857142857142858,0.9954112554112554,0.2697779960286658,0.17246571885879836,0.05771740566662609,0.49996112055409025,27.91515930403532,24.9
|
| 17 |
+
ye2026_sepsis,scored,strict,,scsemi,R2,dm,11550,11550,,,,,,,,,,,,,0.9943267742358651,0.0008967617078976403,0.9987750416971197,0.0002816477132423242,0.9832900432900433,0.972987012987013,0.9935930735930736,0.18089701109750922,0.11053169981903954,0.036657960650904764,0.3280866715674535,27.91515930403532,27.2
|
| 18 |
+
ye2026_sepsis,scored,strict,,raw,R1,raw,11550,11550,0.33575757575757575,0.0361038961038961,0.19174603174603175,0.8750324682351671,0.45246753246753246,0.048484848484848485,0.20195670995670997,0.9687702904505108,0.6457142857142857,0.07393939393939394,0.23065800865800865,0.9990257609379009,0.9973628867524973,0.0007413856483116421,0.9990559959520999,0.000222866438488038,0.9891774891774892,0.9838961038961039,0.9944588744588745,0.1537052243008422,0.192158330917108,0.08099883747830905,0.42686239269625925,27.91515930403532,27.6
|
| 19 |
+
ye2026_sepsis,scored,strict,,raw,R1,dm,11550,11550,0.3151515151515151,0.033506493506493505,0.17953823953823955,0.8750324682351671,0.43142857142857144,0.046147186147186145,0.1856796536796537,0.9687702904505108,0.6141125541125542,0.07367965367965368,0.19628571428571429,0.9990257609379009,0.9972353778977154,0.00044493012032303285,0.9989858136091903,0.0002276280849713014,0.9885714285714285,0.9841558441558441,0.992987012987013,0.15996360123617448,0.19402593108331756,0.08052077611089503,0.43451030843038707,27.91515930403532,27.0
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| 20 |
+
ye2026_sepsis,scored,strict,,raw,R2,raw,11550,11550,,,,,,,,,,,,,0.9974137853488502,0.0005927855190145173,0.9991344989786548,0.00011532139511777371,0.9907359307359307,0.9892640692640693,0.9922077922077922,0.15976757867907537,0.19497083696529882,0.08166601063281398,0.4364044262771882,27.91515930403532,24.7
|
| 21 |
+
ye2026_sepsis,scored,strict,,raw,R2,dm,11550,11550,,,,,,,,,,,,,0.9979505069245327,0.0002791528397255204,0.9990390172597964,0.00010446779542973159,0.9888744588744589,0.9882251082251082,0.9895238095238095,0.1653516003956507,0.19656242623032982,0.08111497808433898,0.4430290047103195,27.91515930403532,24.6
|
| 22 |
+
ye2026_sepsis,scored,strict,,refcal,R1,raw,11550,11550,0.4838095238095238,0.0954112554112554,0.27971139971139974,0.8750324682351671,0.6438961038961039,0.13194805194805195,0.30273593073593075,0.9687702904505108,0.8242424242424242,0.19437229437229436,0.315982683982684,0.9990257609379009,0.9925681490226944,0.0008750368116502865,0.9966308914750475,0.0002571711864626518,0.9713419913419914,0.9552380952380952,0.9874458874458875,0.1334578417704967,0.08023405643875847,0.025425669933957673,0.23911756814321283,27.91515930403532,27.5
|
| 23 |
+
ye2026_sepsis,scored,strict,,refcal,R1,dm,11550,11550,0.48329004329004327,0.19385281385281386,0.33896103896103896,0.8750324682351671,0.6294372294372295,0.26735930735930735,0.3587186147186147,0.9687702904505108,0.8083982683982684,0.38155844155844154,0.3831255411255411,0.9990257609379009,0.9853432844212066,0.0007816369668647236,0.9908545379584341,0.00101385563959521,0.9387878787878788,0.9107359307359307,0.9668398268398268,0.09955815564731585,0.06051726112708966,0.01992380518260317,0.17999922195700868,27.91515930403532,27.4
|
| 24 |
+
ye2026_sepsis,scored,strict,,refcal,R2,raw,11550,11550,,,,,,,,,,,,,0.9949506193662037,0.0013405785726047972,0.9969315042821536,0.0003472651007628698,0.9752813852813853,0.9688311688311688,0.9817316017316017,0.13384556869364006,0.0804142296395074,0.02558006360992171,0.23983986194306917,27.91515930403532,25.3
|
| 25 |
+
ye2026_sepsis,scored,strict,,refcal,R2,dm,11550,11550,,,,,,,,,,,,,0.9867266730383614,0.0016014998469615657,0.991591218305504,0.0006287368017537098,0.9423809523809524,0.9231168831168831,0.9616450216450216,0.1008333762362017,0.06112892520642954,0.020091008359177653,0.1820533098018089,27.91515930403532,25.5
|
paper-releases/pbisc-diffusion/updates/20261015T121654Z-x1-nine-core40-deck/diffusion/dataset/server_1/model8/presentations/2026-09-30--paper-summary--r00/data/x1_priority_20261015/builds/20261015T120743086141Z/sources/92f207b9823f92d3/manifest.json
ADDED
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|
| 1 |
+
{
|
| 2 |
+
"schema": "paired_ft_contrast_extra.v1",
|
| 3 |
+
"dataset": "ye2026_sepsis",
|
| 4 |
+
"design": "scored",
|
| 5 |
+
"unit": "strict",
|
| 6 |
+
"written_utc": "2026-10-12T18:05:35.211183+00:00",
|
| 7 |
+
"command": [
|
| 8 |
+
"/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/tools/score_strict.py",
|
| 9 |
+
"--support-manifest",
|
| 10 |
+
"/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/protocol/splits/ye2026_sepsis/disease/draw4/support.json",
|
| 11 |
+
"--out",
|
| 12 |
+
"/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/scores/ye2026_sepsis/disease/draw4",
|
| 13 |
+
"--action",
|
| 14 |
+
"all",
|
| 15 |
+
"--threads",
|
| 16 |
+
"4",
|
| 17 |
+
"--arm",
|
| 18 |
+
"lora=/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/generated/ye2026_sepsis/disease/draw4/lora.npz",
|
| 19 |
+
"--arm",
|
| 20 |
+
"pairedcal=/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/generated/ye2026_sepsis/disease/draw4/pairedcal.npz",
|
| 21 |
+
"--arm",
|
| 22 |
+
"scsemi=/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/generated/ye2026_sepsis/disease/draw4/scsemi.npz",
|
| 23 |
+
"--arm",
|
| 24 |
+
"raw=/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/generated/global/ye2026_sepsis/raw.npz",
|
| 25 |
+
"--arm",
|
| 26 |
+
"refcal=/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/generated/global/ye2026_sepsis/refcal.npz"
|
| 27 |
+
],
|
| 28 |
+
"threads": 4,
|
| 29 |
+
"donors": [
|
| 30 |
+
"Abd-PS04",
|
| 31 |
+
"Abd-PS05",
|
| 32 |
+
"Abd-PS07",
|
| 33 |
+
"Abd-PS19",
|
| 34 |
+
"Abd-PS20",
|
| 35 |
+
"Abd-PS23",
|
| 36 |
+
"Abd-PS27",
|
| 37 |
+
"Abd-S103",
|
| 38 |
+
"Abd-S120",
|
| 39 |
+
"Abd-S123",
|
| 40 |
+
"Abd-S156",
|
| 41 |
+
"Abd-S39",
|
| 42 |
+
"Abd-S42",
|
| 43 |
+
"Abd-S47",
|
| 44 |
+
"Abd-S51",
|
| 45 |
+
"Abd-S54",
|
| 46 |
+
"Abd-S57",
|
| 47 |
+
"Abd-S66",
|
| 48 |
+
"Abd-S79",
|
| 49 |
+
"Abd-S83",
|
| 50 |
+
"Abd-S98",
|
| 51 |
+
"HC01",
|
| 52 |
+
"HC05",
|
| 53 |
+
"HC07",
|
| 54 |
+
"HC09",
|
| 55 |
+
"HC12",
|
| 56 |
+
"HC13",
|
| 57 |
+
"HC16",
|
| 58 |
+
"IC10",
|
| 59 |
+
"IC15",
|
| 60 |
+
"IC16",
|
| 61 |
+
"IC19",
|
| 62 |
+
"IC22",
|
| 63 |
+
"PHC01",
|
| 64 |
+
"PHC02",
|
| 65 |
+
"PHC03",
|
| 66 |
+
"PHC05",
|
| 67 |
+
"PIC01",
|
| 68 |
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| 1 |
+
{
|
| 2 |
+
"schema": "paired_ft_contrast_extra.v1",
|
| 3 |
+
"dataset": "imperial_eskd",
|
| 4 |
+
"design": "scored",
|
| 5 |
+
"unit": "strict",
|
| 6 |
+
"written_utc": "2026-10-14T13:42:43.941888+00:00",
|
| 7 |
+
"command": [
|
| 8 |
+
"/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/tools/score_strict.py",
|
| 9 |
+
"--support-manifest",
|
| 10 |
+
"/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/protocol/splits/imperial_eskd/disease/draw3/support.json",
|
| 11 |
+
"--out",
|
| 12 |
+
"/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/scores/imperial_eskd/disease/draw3",
|
| 13 |
+
"--action",
|
| 14 |
+
"all",
|
| 15 |
+
"--threads",
|
| 16 |
+
"4",
|
| 17 |
+
"--arm",
|
| 18 |
+
"lora=/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/generated/imperial_eskd/disease/draw3/lora.npz",
|
| 19 |
+
"--arm",
|
| 20 |
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"pairedcal=/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/generated/imperial_eskd/disease/draw3/pairedcal.npz",
|
| 21 |
+
"--arm",
|
| 22 |
+
"scsemi=/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/generated/imperial_eskd/disease/draw3/scsemi.npz",
|
| 23 |
+
"--arm",
|
| 24 |
+
"raw=/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/generated/global/imperial_eskd/raw.npz",
|
| 25 |
+
"--arm",
|
| 26 |
+
"refcal=/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/generated/global/imperial_eskd/refcal.npz"
|
| 27 |
+
],
|
| 28 |
+
"threads": 4,
|
| 29 |
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"donors": [
|
| 30 |
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"C20_1004",
|
| 31 |
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"C20_1404",
|
| 32 |
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"C21_1004",
|
| 33 |
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"C21_1704",
|
| 34 |
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"C21_2504",
|
| 35 |
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"C23_2204",
|
| 36 |
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"C33_1401",
|
| 37 |
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"C33_1601",
|
| 38 |
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"C33_1901",
|
| 39 |
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"C34_1404",
|
| 40 |
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"C34_2104",
|
| 41 |
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"C34_2504",
|
| 42 |
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"C36_1504",
|
| 43 |
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"C36_1704",
|
| 44 |
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"C36_2104",
|
| 45 |
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"C42_1504",
|
| 46 |
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"C42_2204",
|
| 47 |
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"C42_2704",
|
| 48 |
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"C58_1604",
|
| 49 |
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"C58_2501",
|
| 50 |
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"C58_2901",
|
| 51 |
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"C58_0102",
|
| 52 |
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"C58_0402",
|
| 53 |
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"C58_1003",
|
| 54 |
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"C60_2504",
|
| 55 |
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"C63_1704",
|
| 56 |
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"C63_2404",
|
| 57 |
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"C63_2904",
|
| 58 |
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"C65_1704",
|
| 59 |
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"C65_2104",
|
| 60 |
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|
| 61 |
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"C69_1804",
|
| 62 |
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"C82_2504",
|
| 63 |
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"C85_2004",
|
| 64 |
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"C93_2104",
|
| 65 |
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"C93_2704",
|
| 66 |
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"C93_0405",
|
| 67 |
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"C101_0601",
|
| 68 |
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"C101_1101",
|
| 69 |
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"C101_1301",
|
| 70 |
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|
| 71 |
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|
| 72 |
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| 73 |
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|
| 74 |
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|
| 75 |
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"C106_2204",
|
| 76 |
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"C113_0605",
|
| 77 |
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"C123_2404",
|
| 78 |
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|
| 79 |
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"C123_0505",
|
| 80 |
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"C124_2404",
|
| 81 |
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|
| 82 |
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|
| 83 |
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"C126_2504",
|
| 84 |
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"C126_3004",
|
| 85 |
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"C126_0605",
|
| 86 |
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"C127_2504",
|
| 87 |
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"C127_0405",
|
| 88 |
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"C127_1105",
|
| 89 |
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"C128_2504",
|
| 90 |
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"C128_0405",
|
| 91 |
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"C128_1105",
|
| 92 |
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"C132_2804",
|
| 93 |
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"C132_0205",
|
| 94 |
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"C132_1105",
|
| 95 |
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"C137_3004",
|
| 96 |
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"C137_2502",
|
| 97 |
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"C138_3004",
|
| 98 |
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"C138_2301",
|
| 99 |
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"C138_3001",
|
| 100 |
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"C138_0202",
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| 101 |
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|
| 102 |
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"C140_3004",
|
| 103 |
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"C140_2801",
|
| 104 |
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"C140_3001",
|
| 105 |
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"C140_0202",
|
| 106 |
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"C140_0402",
|
| 107 |
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"C140_0602",
|
| 108 |
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"C140_0902",
|
| 109 |
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|
| 110 |
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"C141_2001",
|
| 111 |
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"C141_2201",
|
| 112 |
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"C141_3001",
|
| 113 |
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"C141_0202",
|
| 114 |
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"C142_3004",
|
| 115 |
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"C145_3004",
|
| 116 |
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"C145_0701",
|
| 117 |
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"C145_1201",
|
| 118 |
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"C145_1401",
|
| 119 |
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"C145_1901",
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| 120 |
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"C145_2301",
|
| 121 |
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"C146_3004",
|
| 122 |
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"C146_1201",
|
| 123 |
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"C146_1401",
|
| 124 |
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"C146_1601",
|
| 125 |
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"C146_1901",
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| 126 |
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"C146_2301",
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| 127 |
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"C146_2701",
|
| 128 |
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"C146_2502",
|
| 129 |
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"C147_3004",
|
| 130 |
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"C147_1401",
|
| 131 |
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"C147_1901",
|
| 132 |
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"C152_0405",
|
| 133 |
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"C161_1105",
|
| 134 |
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"C164_1105",
|
| 135 |
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"C167_1205",
|
| 136 |
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"C168_1205",
|
| 137 |
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"C168_2001",
|
| 138 |
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"C168_2301",
|
| 139 |
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"C168_3001",
|
| 140 |
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"C168_0202",
|
| 141 |
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"C168_0403",
|
| 142 |
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"C169_1205",
|
| 143 |
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"C169_2001",
|
| 144 |
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"C169_2301",
|
| 145 |
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"C169_0202",
|
| 146 |
+
"C169_0403",
|
| 147 |
+
"C170_1205",
|
| 148 |
+
"C170_2301",
|
| 149 |
+
"C170_0202",
|
| 150 |
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"C170_0402",
|
| 151 |
+
"C170_0403",
|
| 152 |
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"C187_2605",
|
| 153 |
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"C187_1201",
|
| 154 |
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"C187_1401",
|
| 155 |
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"C187_1901",
|
| 156 |
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"C187_2301",
|
| 157 |
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"C187_2502",
|
| 158 |
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"C190_2605",
|
| 159 |
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"C190_2901",
|
| 160 |
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"C190_0102",
|
| 161 |
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"C190_0302",
|
| 162 |
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"C190_0502",
|
| 163 |
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"C190_0802",
|
| 164 |
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"C190_1002",
|
| 165 |
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"C190_0903",
|
| 166 |
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"C193_2605",
|
| 167 |
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"C195_2605",
|
| 168 |
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"C197_2605",
|
| 169 |
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"C212_2705",
|
| 170 |
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"C214_2705",
|
| 171 |
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"C234_2805",
|
| 172 |
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"C237_2805",
|
| 173 |
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"C238_2905",
|
| 174 |
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"C246_2905"
|
| 175 |
+
],
|
| 176 |
+
"n_samples": 145,
|
| 177 |
+
"contrast": {
|
| 178 |
+
"case_groups": [
|
| 179 |
+
"covid_positive"
|
| 180 |
+
],
|
| 181 |
+
"control_groups": [
|
| 182 |
+
"covid_negative"
|
| 183 |
+
],
|
| 184 |
+
"n_case_donors": 104,
|
| 185 |
+
"n_control_donors": 31
|
| 186 |
+
},
|
| 187 |
+
"calls": {
|
| 188 |
+
"/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/scores/imperial_eskd/disease/draw3/score": {
|
| 189 |
+
"arms": [
|
| 190 |
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"lora",
|
| 191 |
+
"pairedcal",
|
| 192 |
+
"scsemi",
|
| 193 |
+
"raw",
|
| 194 |
+
"refcal"
|
| 195 |
+
],
|
| 196 |
+
"summary_sha256": "3bfd21f7a518adfd1dcc74cf93683fb1d45afc31b2fa927531e17ceb97a90778",
|
| 197 |
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"contrast_csv_sha256": "edff10c0a8d6a62dac5431cf8e14cb4a45f128b7e4c4c03a02b0c0d31030a27a"
|
| 198 |
+
}
|
| 199 |
+
},
|
| 200 |
+
"notes": {
|
| 201 |
+
"source_tree": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores"
|
| 202 |
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},
|
| 203 |
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"reference_sha256": "34b4caa3f8a60b46d5faf58f09cdaa5622bcce19e4c45d9902a711fead96375e",
|
| 204 |
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"deg_reference": {
|
| 205 |
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"source": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scoring_cache/imperial_eskd/deg_reference.npz",
|
| 206 |
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"sha256": "8fada1ace7530b79bfc5c5201b9cb60399ff77d083dd8b53b13cfbe900cda55c"
|
| 207 |
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},
|
| 208 |
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"gene_exclusion": null,
|
| 209 |
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"n_genes_disease_scores": 5927,
|
| 210 |
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"genes_per_type": {
|
| 211 |
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"T cell": 3031,
|
| 212 |
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"B cell": 3186,
|
| 213 |
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"Monocyte": 2879,
|
| 214 |
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"NK cell": 2964
|
| 215 |
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},
|
| 216 |
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"arms": {
|
| 217 |
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"lora": {
|
| 218 |
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"call": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/scores/imperial_eskd/disease/draw3/score",
|
| 219 |
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"npz": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/generated/imperial_eskd/disease/draw3/lora.npz",
|
| 220 |
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"npz_read_from": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/generated/imperial_eskd/disease/draw3/lora.npz",
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| 221 |
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"npz_sha256": "eb9801073de0650d85a3895af52caba41f9c13c389b3433b8390e53dfff10772",
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| 222 |
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"receipt_verified": true,
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| 223 |
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"condition": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/data/imperial_eskd/disease/draw3/test_raw.npz",
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| 224 |
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"condition_sha256": "1bb5ea46702a37ba35cf81b4e82426c5cfa539ef881c477be37e40621df26b7f",
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| 225 |
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"condition_label": "test_raw.npz@1bb5ea46",
|
| 226 |
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"condition_read_from": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/data/imperial_eskd/disease/draw3/test_raw.npz",
|
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