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  1. paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/logs/cx_fractions_immicro_cv1.log +71 -0
  2. paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/logs/cx_fractions_immicro_cv2.log +70 -0
  3. paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/logs/cx_fractions_immicro_cv3.log +70 -0
  4. paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/logs/cx_fractions_immicro_cv4.log +70 -0
paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/logs/cx_fractions_immicro_cv1.log ADDED
@@ -0,0 +1,71 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ >Running CIBERSORTxFractions...
2
+ >[Options] username: [REDACTED]
3
+ >[Options] token: [REDACTED]
4
+ >[Options] single_cell: TRUE
5
+ >[Options] refsample: refsample.txt
6
+ >[Options] mixture: mixture.txt
7
+ >[Options] rmbatchSmode: TRUE
8
+ >[Options] fraction: 0
9
+ >[Options] replicates: 5
10
+ >[Options] sampling: 0.5
11
+ >[Options] G.min: 300
12
+ >[Options] G.max: 500
13
+ >[Options] q.value: 0.01
14
+ >[Options] perm: 0
15
+ >[Options] QN: FALSE
16
+ >[Options] verbose: TRUE
17
+ >Making reference sample file.
18
+ >Making phenotype class file.
19
+ >==========Signature Matrix Settings============
20
+ >Pure samples file: /src/outdir//CIBERSORTx_refsample_inferred_refsample.txt
21
+ >Phenotype classes file: /src/outdir//CIBERSORTx_refsample_inferred_phenoclasses.txt
22
+ >Minimum number of DEGs to consider from each phenotype for signature matrix set to: 300
23
+ >Maximum number of DEGs to consider from each phenotype for signature matrix set to: 500
24
+ >Q-value for signature matrix construction set to: 0.01
25
+ >Quantile normalization of input samples is disabled
26
+ >===============================================
27
+ >C++14
28
+ >Loaded 30 columns and 16131 rows
29
+ >=============Make Signature Matrix=============
30
+ >Maximum condition number (kappa):999
31
+ >49974 DEG expressed across 6 samples were identified
32
+ >Group size: 454, Kappa: 13.0019370712203
33
+ >Best kappa: 13.0019370712203
34
+ >SVD UpperRightDiag: 38840.4
35
+ >SVD LowerRightDiag: 2987.28
36
+ >=============CIBERSORTx Settings===============
37
+ >Mixture file: /src/data/mixture.txt
38
+ >Signature matrix file: /src/outdir//CIBERSORTx_refsample_inferred_phenoclasses.CIBERSORTx_refsample_inferred_refsample.bm.K999.txt
39
+ >Enable verbose output
40
+ >Do S-mode batch correction
41
+ >==================CIBERSORTx===================
42
+ >Adjusting mixtures with S-mode batch correction.
43
+ >Running CIBERSORTx on unadjusted mixtures with S-mode adjusted signature matrix.
44
+ >=============CIBERSORTx Settings===============
45
+ >Mixture file: /src/data/mixture.txt
46
+ >Signature matrix file: /src/outdir//CIBERSORTx_sigmatrix_Adjusted.txt
47
+ >Enable verbose output
48
+ >==================CIBERSORTx===================
49
+ column B cell DC Monocyte NK cell Other T cell P-value Correlation RMSE %Completed
50
+ 1 0.0518863 0.0375886 0.178932 0.0994721 0.151642 0.480479 9999 4.54545
51
+ 2 0.0746504 0 0.150529 0 0.198564 0.576256 9999 9.09091
52
+ 3 0.155889 0 0.348236 0 0.138199 0.357676 9999 13.6364
53
+ 4 0.071653 0.0327012 0.238547 0 0.103764 0.553335 9999 18.1818
54
+ 5 0.144447 0.0530597 0.166687 0 0.251119 0.384687 9999 22.7273
55
+ 6 0.0905239 0.0535252 0.224485 0.0259013 0.195163 0.410401 9999 27.2727
56
+ 7 0.105225 0 0.284856 0.0543931 0.208701 0.346825 9999 31.8182
57
+ 8 0.0500484 0.0997084 0.433805 0 0.0918741 0.324564 9999 36.3636
58
+ 9 0.0788558 0.00893934 0.240031 0.0243233 0.0997474 0.548103 9999 40.9091
59
+ 10 0.0811864 0.0631681 0.187528 0.0533981 0.0786707 0.536048 9999 45.4545
60
+ 11 0.102221 0.122116 0.0486284 0.047451 0.17038 0.509204 9999 50
61
+ 12 0.0748134 0.011423 0.145337 0.0239796 0.172233 0.572215 9999 54.5455
62
+ 13 0.125679 0.0787921 0.101418 0 0.191017 0.503093 9999 59.0909
63
+ 14 0.0296741 0.165462 0.123888 0.0959785 0.091199 0.493799 9999 63.6364
64
+ 15 0.0241699 0.0446178 0.347679 0 0.0626996 0.520834 9999 68.1818
65
+ 16 0.161764 0.0382437 0.189072 0 0.215461 0.39546 9999 72.7273
66
+ 17 0.076572 0.0692196 0.300333 0 0.124642 0.429234 9999 77.2727
67
+ 18 0.0585028 0.0217478 0.153151 0 0.184494 0.582104 9999 81.8182
68
+ 19 0.0443576 0.108998 0.192913 0.0169446 0.156383 0.480404 9999 86.3636
69
+ 20 0.124632 0 0.140912 0.0903682 0.157486 0.486602 9999 90.9091
70
+ 21 0.132241 0.0820887 0.342655 0 0.191196 0.251819 9999 95.4545
71
+ 22 0.0792834 0.0282124 0.318245 0 0.145125 0.429134 9999 100
paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/logs/cx_fractions_immicro_cv2.log ADDED
@@ -0,0 +1,70 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ >Running CIBERSORTxFractions...
2
+ >[Options] username: [REDACTED]
3
+ >[Options] token: [REDACTED]
4
+ >[Options] single_cell: TRUE
5
+ >[Options] refsample: refsample.txt
6
+ >[Options] mixture: mixture.txt
7
+ >[Options] rmbatchSmode: TRUE
8
+ >[Options] fraction: 0
9
+ >[Options] replicates: 5
10
+ >[Options] sampling: 0.5
11
+ >[Options] G.min: 300
12
+ >[Options] G.max: 500
13
+ >[Options] q.value: 0.01
14
+ >[Options] perm: 0
15
+ >[Options] QN: FALSE
16
+ >[Options] verbose: TRUE
17
+ >Making reference sample file.
18
+ >Making phenotype class file.
19
+ >==========Signature Matrix Settings============
20
+ >Pure samples file: /src/outdir//CIBERSORTx_refsample_inferred_refsample.txt
21
+ >Phenotype classes file: /src/outdir//CIBERSORTx_refsample_inferred_phenoclasses.txt
22
+ >Minimum number of DEGs to consider from each phenotype for signature matrix set to: 300
23
+ >Maximum number of DEGs to consider from each phenotype for signature matrix set to: 500
24
+ >Q-value for signature matrix construction set to: 0.01
25
+ >Quantile normalization of input samples is disabled
26
+ >===============================================
27
+ >C++14
28
+ >Loaded 30 columns and 16131 rows
29
+ >=============Make Signature Matrix=============
30
+ >Maximum condition number (kappa):999
31
+ >49647 DEG expressed across 6 samples were identified
32
+ >Group size: 411, Kappa: 13.4884547633826
33
+ >Best kappa: 13.4884547633826
34
+ >SVD UpperRightDiag: 39124.6
35
+ >SVD LowerRightDiag: 2900.6
36
+ >=============CIBERSORTx Settings===============
37
+ >Mixture file: /src/data/mixture.txt
38
+ >Signature matrix file: /src/outdir//CIBERSORTx_refsample_inferred_phenoclasses.CIBERSORTx_refsample_inferred_refsample.bm.K999.txt
39
+ >Enable verbose output
40
+ >Do S-mode batch correction
41
+ >==================CIBERSORTx===================
42
+ >Adjusting mixtures with S-mode batch correction.
43
+ >Running CIBERSORTx on unadjusted mixtures with S-mode adjusted signature matrix.
44
+ >=============CIBERSORTx Settings===============
45
+ >Mixture file: /src/data/mixture.txt
46
+ >Signature matrix file: /src/outdir//CIBERSORTx_sigmatrix_Adjusted.txt
47
+ >Enable verbose output
48
+ >==================CIBERSORTx===================
49
+ column B cell DC Monocyte NK cell Other T cell P-value Correlation RMSE %Completed
50
+ 1 0 0.0857719 0.179638 0 0.26731 0.46728 9999 4.7619
51
+ 2 0.064969 0.0839339 0.247086 0.0146622 0.175682 0.413667 9999 9.52381
52
+ 3 0.170099 0 0.276946 0.0281281 0.109107 0.41572 9999 14.2857
53
+ 4 0.130265 0 0.362254 0.0299978 0.176463 0.301021 9999 19.0476
54
+ 5 0.0501764 0.0875329 0.436571 0.0274523 0.217189 0.181078 9999 23.8095
55
+ 6 0.00402155 0.0804493 0.164155 0.0415891 0.141276 0.568509 9999 28.5714
56
+ 7 0.113653 0.0557758 0.263027 9.34132e-05 0.167924 0.399527 9999 33.3333
57
+ 8 0.0106783 0.0815707 0.250395 0 0.180769 0.476587 9999 38.0952
58
+ 9 0.106561 0 0.233188 0 0.202371 0.457881 9999 42.8571
59
+ 10 0.0845074 0.000487869 0.180146 0.0145831 0.15295 0.567326 9999 47.619
60
+ 11 0.0544552 0.0453533 0.235351 0 0.273579 0.391261 9999 52.381
61
+ 12 0.0837125 0.00338607 0.337285 0.0406896 0.229256 0.305671 9999 57.1429
62
+ 13 0.125178 0.0442104 0.211944 0.0534625 0.140342 0.424862 9999 61.9048
63
+ 14 0.119511 0.00467344 0.167196 0.148363 0.135378 0.424878 9999 66.6667
64
+ 15 0.117542 0.0801958 0.14988 0.329758 0.0158602 0.306765 9999 71.4286
65
+ 16 0.11061 0.0132268 0.176625 0 0.274535 0.425003 9999 76.1905
66
+ 17 0.0549554 0.0540102 0.302365 0.00323143 0.163527 0.421911 9999 80.9524
67
+ 18 0.201729 0.0491975 0.250141 0 0.185213 0.313719 9999 85.7143
68
+ 19 0.13723 0 0.281264 0.00335872 0.180912 0.397236 9999 90.4762
69
+ 20 0.114968 0.0384634 0.267422 0.081993 0.161402 0.335752 9999 95.2381
70
+ 21 0.10318 0.0772566 0.231674 0.0058327 0.0100883 0.571969 9999 100
paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/logs/cx_fractions_immicro_cv3.log ADDED
@@ -0,0 +1,70 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ >Running CIBERSORTxFractions...
2
+ >[Options] username: [REDACTED]
3
+ >[Options] token: [REDACTED]
4
+ >[Options] single_cell: TRUE
5
+ >[Options] refsample: refsample.txt
6
+ >[Options] mixture: mixture.txt
7
+ >[Options] rmbatchSmode: TRUE
8
+ >[Options] fraction: 0
9
+ >[Options] replicates: 5
10
+ >[Options] sampling: 0.5
11
+ >[Options] G.min: 300
12
+ >[Options] G.max: 500
13
+ >[Options] q.value: 0.01
14
+ >[Options] perm: 0
15
+ >[Options] QN: FALSE
16
+ >[Options] verbose: TRUE
17
+ >Making reference sample file.
18
+ >Making phenotype class file.
19
+ >==========Signature Matrix Settings============
20
+ >Pure samples file: /src/outdir//CIBERSORTx_refsample_inferred_refsample.txt
21
+ >Phenotype classes file: /src/outdir//CIBERSORTx_refsample_inferred_phenoclasses.txt
22
+ >Minimum number of DEGs to consider from each phenotype for signature matrix set to: 300
23
+ >Maximum number of DEGs to consider from each phenotype for signature matrix set to: 500
24
+ >Q-value for signature matrix construction set to: 0.01
25
+ >Quantile normalization of input samples is disabled
26
+ >===============================================
27
+ >C++14
28
+ >Loaded 30 columns and 16131 rows
29
+ >=============Make Signature Matrix=============
30
+ >Maximum condition number (kappa):999
31
+ >49402 DEG expressed across 6 samples were identified
32
+ >Group size: 455, Kappa: 12.8026473707061
33
+ >Best kappa: 12.8026473707061
34
+ >SVD UpperRightDiag: 39220.9
35
+ >SVD LowerRightDiag: 3063.5
36
+ >=============CIBERSORTx Settings===============
37
+ >Mixture file: /src/data/mixture.txt
38
+ >Signature matrix file: /src/outdir//CIBERSORTx_refsample_inferred_phenoclasses.CIBERSORTx_refsample_inferred_refsample.bm.K999.txt
39
+ >Enable verbose output
40
+ >Do S-mode batch correction
41
+ >==================CIBERSORTx===================
42
+ >Adjusting mixtures with S-mode batch correction.
43
+ >Running CIBERSORTx on unadjusted mixtures with S-mode adjusted signature matrix.
44
+ >=============CIBERSORTx Settings===============
45
+ >Mixture file: /src/data/mixture.txt
46
+ >Signature matrix file: /src/outdir//CIBERSORTx_sigmatrix_Adjusted.txt
47
+ >Enable verbose output
48
+ >==================CIBERSORTx===================
49
+ column B cell DC Monocyte NK cell Other T cell P-value Correlation RMSE %Completed
50
+ 1 0.0780807 0.00453808 0.134298 0.0684053 0.237289 0.477389 9999 4.7619
51
+ 2 0.0327717 0.0335503 0.337942 0.0649049 0.339737 0.191094 9999 9.52381
52
+ 3 0.216416 0 0.196057 0.00166292 0.237246 0.348618 9999 14.2857
53
+ 4 0.0253246 0.0655315 0.518312 0.00828573 0.248748 0.133797 9999 19.0476
54
+ 5 0.130679 0.0705625 0.319534 0 0.281203 0.198021 9999 23.8095
55
+ 6 0.0605266 0.00416135 0.320446 0.0201733 0.254335 0.340357 9999 28.5714
56
+ 7 0.09746 0.11516 0.282943 0 0.208785 0.295652 9999 33.3333
57
+ 8 0.0745294 0.0823537 0.216991 0.0578865 0.147509 0.42073 9999 38.0952
58
+ 9 0.0214484 0.062127 0.147971 0 0.214055 0.554399 9999 42.8571
59
+ 10 0.100402 0.0117282 0.182864 0 0.224646 0.480359 9999 47.619
60
+ 11 0.166538 0.128371 0.350986 0.044383 0.176072 0.13365 9999 52.381
61
+ 12 0.100748 0.0412092 0.150161 0.0126174 0.249954 0.445311 9999 57.1429
62
+ 13 0.112718 0 0.199728 0 0.264266 0.423288 9999 61.9048
63
+ 14 0.0487608 0.119169 0.230308 0.0707362 0.106919 0.424107 9999 66.6667
64
+ 15 0.155165 0.0417141 0.106565 0.101638 0.212698 0.38222 9999 71.4286
65
+ 16 0.102618 0 0.233127 0.0172146 0.284186 0.362855 9999 76.1905
66
+ 17 0.0356179 0.059517 0.267887 0.018983 0.263402 0.354593 9999 80.9524
67
+ 18 0.0482605 0.0831724 0.209586 0 0.276333 0.382648 9999 85.7143
68
+ 19 0.0716545 0 0.368687 0.000819503 0.261955 0.296884 9999 90.4762
69
+ 20 0.154672 0.0744086 0.362925 0.0972146 0.275939 0.0348418 9999 95.2381
70
+ 21 0.212718 0.0111586 0.150789 0.054637 0.242553 0.328144 9999 100
paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/logs/cx_fractions_immicro_cv4.log ADDED
@@ -0,0 +1,70 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ >Running CIBERSORTxFractions...
2
+ >[Options] username: [REDACTED]
3
+ >[Options] token: [REDACTED]
4
+ >[Options] single_cell: TRUE
5
+ >[Options] refsample: refsample.txt
6
+ >[Options] mixture: mixture.txt
7
+ >[Options] rmbatchSmode: TRUE
8
+ >[Options] fraction: 0
9
+ >[Options] replicates: 5
10
+ >[Options] sampling: 0.5
11
+ >[Options] G.min: 300
12
+ >[Options] G.max: 500
13
+ >[Options] q.value: 0.01
14
+ >[Options] perm: 0
15
+ >[Options] QN: FALSE
16
+ >[Options] verbose: TRUE
17
+ >Making reference sample file.
18
+ >Making phenotype class file.
19
+ >==========Signature Matrix Settings============
20
+ >Pure samples file: /src/outdir//CIBERSORTx_refsample_inferred_refsample.txt
21
+ >Phenotype classes file: /src/outdir//CIBERSORTx_refsample_inferred_phenoclasses.txt
22
+ >Minimum number of DEGs to consider from each phenotype for signature matrix set to: 300
23
+ >Maximum number of DEGs to consider from each phenotype for signature matrix set to: 500
24
+ >Q-value for signature matrix construction set to: 0.01
25
+ >Quantile normalization of input samples is disabled
26
+ >===============================================
27
+ >C++14
28
+ >Loaded 30 columns and 16131 rows
29
+ >=============Make Signature Matrix=============
30
+ >Maximum condition number (kappa):999
31
+ >49891 DEG expressed across 6 samples were identified
32
+ >Group size: 491, Kappa: 13.298321751832
33
+ >Best kappa: 13.298321751832
34
+ >SVD UpperRightDiag: 38361.4
35
+ >SVD LowerRightDiag: 2884.68
36
+ >=============CIBERSORTx Settings===============
37
+ >Mixture file: /src/data/mixture.txt
38
+ >Signature matrix file: /src/outdir//CIBERSORTx_refsample_inferred_phenoclasses.CIBERSORTx_refsample_inferred_refsample.bm.K999.txt
39
+ >Enable verbose output
40
+ >Do S-mode batch correction
41
+ >==================CIBERSORTx===================
42
+ >Adjusting mixtures with S-mode batch correction.
43
+ >Running CIBERSORTx on unadjusted mixtures with S-mode adjusted signature matrix.
44
+ >=============CIBERSORTx Settings===============
45
+ >Mixture file: /src/data/mixture.txt
46
+ >Signature matrix file: /src/outdir//CIBERSORTx_sigmatrix_Adjusted.txt
47
+ >Enable verbose output
48
+ >==================CIBERSORTx===================
49
+ column B cell DC Monocyte NK cell Other T cell P-value Correlation RMSE %Completed
50
+ 1 0.0405906 0.0895975 0.261981 0.0226177 0.0843313 0.500882 9999 4.7619
51
+ 2 0.036669 0.11212 0.290354 0.000629363 0.123394 0.436834 9999 9.52381
52
+ 3 0.108716 0 0.146376 0 0.158354 0.586553 9999 14.2857
53
+ 4 0.14236 0 0.194981 0.0137686 0.117042 0.53185 9999 19.0476
54
+ 5 0.123136 0 0.415051 0.0350026 0.0711622 0.355649 9999 23.8095
55
+ 6 0.169379 0 0.218533 0 0.128683 0.483406 9999 28.5714
56
+ 7 0.0813904 0.0629583 0.310592 0 0.0767133 0.468346 9999 33.3333
57
+ 8 0.0784917 0.0259852 0.0593011 0 0.179261 0.656961 9999 38.0952
58
+ 9 0.108249 0.054804 0.192315 0 0.161602 0.483029 9999 42.8571
59
+ 10 0.109107 0.0408181 0.176143 0 0.140503 0.533429 9999 47.619
60
+ 11 0.127872 0 0.171718 0.0429936 0.167201 0.490215 9999 52.381
61
+ 12 0.107466 0.0138248 0.23906 0 0.185027 0.454622 9999 57.1429
62
+ 13 0.115521 0.119342 0.245832 0.0213924 0.209484 0.288429 9999 61.9048
63
+ 14 0.0638015 0.0707808 0.345228 0.0612049 0.0835781 0.375406 9999 66.6667
64
+ 15 0.108901 0 0.287228 0 0.136904 0.466967 9999 71.4286
65
+ 16 0.0477161 0.0750607 0.221588 0 0.239713 0.415922 9999 76.1905
66
+ 17 0.0764069 0.0278466 0.22307 0 0.0919392 0.580738 9999 80.9524
67
+ 18 0.0196799 0.0503076 0.155858 0 0.150626 0.623529 9999 85.7143
68
+ 19 0.0820163 0 0.241844 0.00703162 0.394321 0.274787 9999 90.4762
69
+ 20 0.0840025 0.0239991 0.251508 0.0554556 0.146192 0.438843 9999 95.2381
70
+ 21 0.0853241 0.0549992 0.351945 0.0236418 0.0887354 0.395354 9999 100