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Archive 4 checkpoints (1-4)

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  1. paper-releases/pbisc-diffusion/updates/20261006T033847Z-bulkonly-lora5-k4000/diffusion/dataset/server_1/model8/plans/bulkonly_lora5_k4000_20261006/data/ye2026_sepsis/paired_test/draw2_test_raw_K4000.PARTS.json +52 -0
  2. paper-releases/pbisc-diffusion/updates/20261006T033847Z-bulkonly-lora5-k4000/diffusion/dataset/server_1/model8/plans/bulkonly_lora5_k4000_20261006/data/ye2026_sepsis/paired_test/draw3_test_raw_K4000.PARTS.json +52 -0
  3. paper-releases/pbisc-diffusion/updates/20261006T033847Z-bulkonly-lora5-k4000/diffusion/dataset/server_1/model8/plans/bulkonly_lora5_k4000_20261006/data/ye2026_sepsis/paired_test/draw4_test_raw_K4000.PARTS.json +52 -0
  4. paper-releases/pbisc-diffusion/updates/20261006T033847Z-bulkonly-lora5-k4000/diffusion/dataset/server_1/model8/plans/bulkonly_lora5_k4000_20261006/queues/imperial_eskd_draw0.txt +12 -0
paper-releases/pbisc-diffusion/updates/20261006T033847Z-bulkonly-lora5-k4000/diffusion/dataset/server_1/model8/plans/bulkonly_lora5_k4000_20261006/data/ye2026_sepsis/paired_test/draw2_test_raw_K4000.PARTS.json ADDED
@@ -0,0 +1,52 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ {
2
+ "source": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/bulkonly_lora5_k4000_20261006/data/ye2026_sepsis/paired_test/draw2_test_raw_K4000.npz",
3
+ "source_sha256": "8762d277e778fe91240e9a4f248582763934284da113222004e3e21d0c4ac1e6",
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+ "n_rows": 77,
5
+ "cells": 115500,
6
+ "per_row_keys": [
7
+ "bulk_counts",
8
+ "bulk_measurement_fraction",
9
+ "output_availability_mask",
10
+ "recipe_k",
11
+ "cells_per_bulk",
12
+ "sample_ids",
13
+ "donor_ids",
14
+ "groups",
15
+ "donor_n_cells",
16
+ "dataset_rows"
17
+ ],
18
+ "row_stride": 10000019,
19
+ "base_seed": 20260927,
20
+ "tool": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/bulkonly_lora5_k4000_20261006/tools/split_conditions.py",
21
+ "tool_sha256": "eb488d6cc6f3be5fd11f1f035361788a1affaf7ac20ebae159ce3d68ec17866a",
22
+ "parts": [
23
+ {
24
+ "part": 0,
25
+ "rows": [
26
+ 0,
27
+ 38
28
+ ],
29
+ "n_samples": 38,
30
+ "cells": 57000,
31
+ "file": "draw2_test_raw_K4000_part0.npz",
32
+ "sha256": "7d0d747f561c01911df2afda9053ae066e67c447fa40563724791491699fbc0b",
33
+ "seed": 20260927,
34
+ "first_sample": "Abd-PS04",
35
+ "last_sample": "PHC03"
36
+ },
37
+ {
38
+ "part": 1,
39
+ "rows": [
40
+ 38,
41
+ 77
42
+ ],
43
+ "n_samples": 39,
44
+ "cells": 58500,
45
+ "file": "draw2_test_raw_K4000_part1.npz",
46
+ "sha256": "e3c4748d1e2f386b6b96d83f22db96f8f4e0454938c07c656f2e6bc883d193c8",
47
+ "seed": 400261649,
48
+ "first_sample": "PHC05",
49
+ "last_sample": "Uri-S93"
50
+ }
51
+ ]
52
+ }
paper-releases/pbisc-diffusion/updates/20261006T033847Z-bulkonly-lora5-k4000/diffusion/dataset/server_1/model8/plans/bulkonly_lora5_k4000_20261006/data/ye2026_sepsis/paired_test/draw3_test_raw_K4000.PARTS.json ADDED
@@ -0,0 +1,52 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ {
2
+ "source": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/bulkonly_lora5_k4000_20261006/data/ye2026_sepsis/paired_test/draw3_test_raw_K4000.npz",
3
+ "source_sha256": "f824d9bec23218de0403c7681a269e67cfbef2e1a1bc8ce7725c9de717f188ff",
4
+ "n_rows": 77,
5
+ "cells": 115500,
6
+ "per_row_keys": [
7
+ "bulk_counts",
8
+ "bulk_measurement_fraction",
9
+ "output_availability_mask",
10
+ "recipe_k",
11
+ "cells_per_bulk",
12
+ "sample_ids",
13
+ "donor_ids",
14
+ "groups",
15
+ "donor_n_cells",
16
+ "dataset_rows"
17
+ ],
18
+ "row_stride": 10000019,
19
+ "base_seed": 20260927,
20
+ "tool": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/bulkonly_lora5_k4000_20261006/tools/split_conditions.py",
21
+ "tool_sha256": "eb488d6cc6f3be5fd11f1f035361788a1affaf7ac20ebae159ce3d68ec17866a",
22
+ "parts": [
23
+ {
24
+ "part": 0,
25
+ "rows": [
26
+ 0,
27
+ 38
28
+ ],
29
+ "n_samples": 38,
30
+ "cells": 57000,
31
+ "file": "draw3_test_raw_K4000_part0.npz",
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+ "sha256": "28d484fa6fc4500ef40ed66ee9d6194cdfd720b8443a9c6afd8c3aaf3ddfd7d3",
33
+ "seed": 20260927,
34
+ "first_sample": "Abd-PS04",
35
+ "last_sample": "PIC01"
36
+ },
37
+ {
38
+ "part": 1,
39
+ "rows": [
40
+ 38,
41
+ 77
42
+ ],
43
+ "n_samples": 39,
44
+ "cells": 58500,
45
+ "file": "draw3_test_raw_K4000_part1.npz",
46
+ "sha256": "1129a09513fd85bebea2dff42038bc91c01bed54ef9576102c6ffd22fab4056e",
47
+ "seed": 400261649,
48
+ "first_sample": "PIC02",
49
+ "last_sample": "Uri-S93"
50
+ }
51
+ ]
52
+ }
paper-releases/pbisc-diffusion/updates/20261006T033847Z-bulkonly-lora5-k4000/diffusion/dataset/server_1/model8/plans/bulkonly_lora5_k4000_20261006/data/ye2026_sepsis/paired_test/draw4_test_raw_K4000.PARTS.json ADDED
@@ -0,0 +1,52 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ {
2
+ "source": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/bulkonly_lora5_k4000_20261006/data/ye2026_sepsis/paired_test/draw4_test_raw_K4000.npz",
3
+ "source_sha256": "e57f9ded0fa4b8e929fe4f3dcd857e103c5ec2dcb78c51621a358cb2282542fd",
4
+ "n_rows": 77,
5
+ "cells": 115500,
6
+ "per_row_keys": [
7
+ "bulk_counts",
8
+ "bulk_measurement_fraction",
9
+ "output_availability_mask",
10
+ "recipe_k",
11
+ "cells_per_bulk",
12
+ "sample_ids",
13
+ "donor_ids",
14
+ "groups",
15
+ "donor_n_cells",
16
+ "dataset_rows"
17
+ ],
18
+ "row_stride": 10000019,
19
+ "base_seed": 20260927,
20
+ "tool": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/bulkonly_lora5_k4000_20261006/tools/split_conditions.py",
21
+ "tool_sha256": "eb488d6cc6f3be5fd11f1f035361788a1affaf7ac20ebae159ce3d68ec17866a",
22
+ "parts": [
23
+ {
24
+ "part": 0,
25
+ "rows": [
26
+ 0,
27
+ 38
28
+ ],
29
+ "n_samples": 38,
30
+ "cells": 57000,
31
+ "file": "draw4_test_raw_K4000_part0.npz",
32
+ "sha256": "f689e126d0b4b7607fe8685c9927dc68f00e7ce263a8cc21961b2ff97fb7ac1e",
33
+ "seed": 20260927,
34
+ "first_sample": "Abd-PS04",
35
+ "last_sample": "PIC01"
36
+ },
37
+ {
38
+ "part": 1,
39
+ "rows": [
40
+ 38,
41
+ 77
42
+ ],
43
+ "n_samples": 39,
44
+ "cells": 58500,
45
+ "file": "draw4_test_raw_K4000_part1.npz",
46
+ "sha256": "dfc4faf52eeb9715570a44748455c7a884a1c4117e858ec8e72e2fc662b2656c",
47
+ "seed": 400261649,
48
+ "first_sample": "PIC02",
49
+ "last_sample": "Uri-S93"
50
+ }
51
+ ]
52
+ }
paper-releases/pbisc-diffusion/updates/20261006T033847Z-bulkonly-lora5-k4000/diffusion/dataset/server_1/model8/plans/bulkonly_lora5_k4000_20261006/queues/imperial_eskd_draw0.txt ADDED
@@ -0,0 +1,12 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ # imperial_eskd draw 0: LoRA r16 at K = 4000 on the draw's 5 training donors, then paired-test parts (1,500 cells per sample) and bulk-only parts (4,000 cells per sample); base seed 20260927
2
+ train|/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/bulkonly_lora5_k4000_20261006/runs/imperial_eskd/draw0/lora_k4000|/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/bulkonly_lora5_k4000_20261006/data/imperial_eskd/conditions_raw_fixed_K4000.npz|/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/data/imperial_eskd/fewshot_n5/draw0/train_donors.txt
3
+ sample|imperial_eskd_d0_paired_p0|/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/bulkonly_lora5_k4000_20261006/data/imperial_eskd/paired_test/draw0_test_raw_K4000_part0.npz|20260927|/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/bulkonly_lora5_k4000_20261006/generated/imperial_eskd/draw0/paired_test_K4000_part0.npz|70500
4
+ sample|imperial_eskd_d0_paired_p1|/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/bulkonly_lora5_k4000_20261006/data/imperial_eskd/paired_test/draw0_test_raw_K4000_part1.npz|490261820|/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/bulkonly_lora5_k4000_20261006/generated/imperial_eskd/draw0/paired_test_K4000_part1.npz|72000
5
+ sample|imperial_eskd_d0_paired_p2|/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/bulkonly_lora5_k4000_20261006/data/imperial_eskd/paired_test/draw0_test_raw_K4000_part2.npz|970262732|/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/bulkonly_lora5_k4000_20261006/generated/imperial_eskd/draw0/paired_test_K4000_part2.npz|70500
6
+ sample|imperial_eskd_d0_bulkonly_p0|/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/bulkonly_lora5_k4000_20261006/data/imperial_eskd/bulkonly_raw_K4000_part0.npz|20260927|/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/bulkonly_lora5_k4000_20261006/generated/imperial_eskd/draw0/bulkonly_K4000_part0.npz|92000
7
+ sample|imperial_eskd_d0_bulkonly_p1|/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/bulkonly_lora5_k4000_20261006/data/imperial_eskd/bulkonly_raw_K4000_part1.npz|250261364|/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/bulkonly_lora5_k4000_20261006/generated/imperial_eskd/draw0/bulkonly_K4000_part1.npz|96000
8
+ sample|imperial_eskd_d0_bulkonly_p2|/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/bulkonly_lora5_k4000_20261006/data/imperial_eskd/bulkonly_raw_K4000_part2.npz|490261820|/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/bulkonly_lora5_k4000_20261006/generated/imperial_eskd/draw0/bulkonly_K4000_part2.npz|92000
9
+ sample|imperial_eskd_d0_bulkonly_p3|/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/bulkonly_lora5_k4000_20261006/data/imperial_eskd/bulkonly_raw_K4000_part3.npz|720262257|/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/bulkonly_lora5_k4000_20261006/generated/imperial_eskd/draw0/bulkonly_K4000_part3.npz|96000
10
+ sample|imperial_eskd_d0_bulkonly_p4|/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/bulkonly_lora5_k4000_20261006/data/imperial_eskd/bulkonly_raw_K4000_part4.npz|960262713|/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/bulkonly_lora5_k4000_20261006/generated/imperial_eskd/draw0/bulkonly_K4000_part4.npz|92000
11
+ sample|imperial_eskd_d0_bulkonly_p5|/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/bulkonly_lora5_k4000_20261006/data/imperial_eskd/bulkonly_raw_K4000_part5.npz|1190263150|/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/bulkonly_lora5_k4000_20261006/generated/imperial_eskd/draw0/bulkonly_K4000_part5.npz|96000
12
+ sample|imperial_eskd_d0_bulkonly_p6|/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/bulkonly_lora5_k4000_20261006/data/imperial_eskd/bulkonly_raw_K4000_part6.npz|1430263606|/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/bulkonly_lora5_k4000_20261006/generated/imperial_eskd/draw0/bulkonly_K4000_part6.npz|92000