Archive 4 checkpoints (1-4)
Browse files- paper-releases/pbisc-diffusion/updates/20261002T085943Z-deck-restructure-contrast-metrics-zeroshot-len/diffusion/dataset/server_1/model8/plans/paired_finetune_intradataset_20260927/scores_contrast/ji2025_chili/fewshot_n5/draw4/limma/versions.txt +3 -0
- paper-releases/pbisc-diffusion/updates/20261002T085943Z-deck-restructure-contrast-metrics-zeroshot-len/diffusion/dataset/server_1/model8/plans/paired_finetune_intradataset_20260927/scores_contrast/ji2025_chili/fewshot_n5/draw4/manifest.json +503 -0
- paper-releases/pbisc-diffusion/updates/20261002T085943Z-deck-restructure-contrast-metrics-zeroshot-len/diffusion/dataset/server_1/model8/plans/paired_finetune_intradataset_20260927/scores_contrast/ji2025_chili/fewshot_n5/draw4/rbo.csv +51 -0
- paper-releases/pbisc-diffusion/updates/20261002T085943Z-deck-restructure-contrast-metrics-zeroshot-len/diffusion/dataset/server_1/model8/plans/paired_finetune_intradataset_20260927/scores_contrast/ji2025_chili/fewshot_n5/draw4/repro.json +53 -0
paper-releases/pbisc-diffusion/updates/20261002T085943Z-deck-restructure-contrast-metrics-zeroshot-len/diffusion/dataset/server_1/model8/plans/paired_finetune_intradataset_20260927/scores_contrast/ji2025_chili/fewshot_n5/draw4/limma/versions.txt
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
R version 4.5.2 (2025-10-31)
|
| 2 |
+
limma 3.66.0
|
| 3 |
+
edgeR 4.8.1
|
paper-releases/pbisc-diffusion/updates/20261002T085943Z-deck-restructure-contrast-metrics-zeroshot-len/diffusion/dataset/server_1/model8/plans/paired_finetune_intradataset_20260927/scores_contrast/ji2025_chili/fewshot_n5/draw4/manifest.json
ADDED
|
@@ -0,0 +1,503 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"schema": "paired_ft_contrast_extra.v1",
|
| 3 |
+
"dataset": "ji2025_chili",
|
| 4 |
+
"design": "fewshot",
|
| 5 |
+
"unit": "fewshot_n5/draw4",
|
| 6 |
+
"written_utc": "2026-10-02T06:31:54.701910+00:00",
|
| 7 |
+
"command": [
|
| 8 |
+
"tools/contrast_extra.py",
|
| 9 |
+
"--design",
|
| 10 |
+
"fewshot",
|
| 11 |
+
"--dataset",
|
| 12 |
+
"ji2025_chili",
|
| 13 |
+
"--draws",
|
| 14 |
+
"0,1,2,3,4",
|
| 15 |
+
"--threads",
|
| 16 |
+
"4"
|
| 17 |
+
],
|
| 18 |
+
"threads": 4,
|
| 19 |
+
"donors": [
|
| 20 |
+
"N032_AC",
|
| 21 |
+
"N038_BC",
|
| 22 |
+
"N038_AC",
|
| 23 |
+
"N055_AC",
|
| 24 |
+
"N136_TOL",
|
| 25 |
+
"N136_FU1",
|
| 26 |
+
"N138_TOL",
|
| 27 |
+
"N138_FU1",
|
| 28 |
+
"N128_BC",
|
| 29 |
+
"N128_AC",
|
| 30 |
+
"N147_TOL",
|
| 31 |
+
"N150_BC",
|
| 32 |
+
"N159_BC",
|
| 33 |
+
"N001_TOL",
|
| 34 |
+
"N001_FU1",
|
| 35 |
+
"N012_TOL",
|
| 36 |
+
"N012_FU1",
|
| 37 |
+
"N018_BC",
|
| 38 |
+
"N018_AC",
|
| 39 |
+
"N022_TOL",
|
| 40 |
+
"N022_FU1",
|
| 41 |
+
"N035_TOL",
|
| 42 |
+
"N043_TOL",
|
| 43 |
+
"N043_FU1"
|
| 44 |
+
],
|
| 45 |
+
"n_samples": 24,
|
| 46 |
+
"contrast": {
|
| 47 |
+
"case_groups": [
|
| 48 |
+
"TOL",
|
| 49 |
+
"FU1"
|
| 50 |
+
],
|
| 51 |
+
"control_groups": [
|
| 52 |
+
"BC",
|
| 53 |
+
"AC"
|
| 54 |
+
],
|
| 55 |
+
"n_case_donors": 14,
|
| 56 |
+
"n_control_donors": 10
|
| 57 |
+
},
|
| 58 |
+
"calls": {
|
| 59 |
+
"/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ji2025_chili/fewshot_n5/draw4": {
|
| 60 |
+
"arms": [
|
| 61 |
+
"zs_raw",
|
| 62 |
+
"zs_pseudo",
|
| 63 |
+
"zs_cal",
|
| 64 |
+
"lora5"
|
| 65 |
+
],
|
| 66 |
+
"summary_sha256": "6d7a6f42824a11e099290e2cf93b7313332e9155115cfd801f741c7c1912bfa7",
|
| 67 |
+
"contrast_csv_sha256": "aaf86f4bcd669c9b499182cdc70eeedd0080b802d305fd8075db2813accd0d52"
|
| 68 |
+
},
|
| 69 |
+
"/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ji2025_chili/fewshot_n5/draw4_scsemi5": {
|
| 70 |
+
"arms": [
|
| 71 |
+
"scsemi5"
|
| 72 |
+
],
|
| 73 |
+
"summary_sha256": "1fb47cf7100912af62ee9f7f55fe2603067158362529f121f8bae1da7827198d",
|
| 74 |
+
"contrast_csv_sha256": "08ede31448292588dd8a83e6ae183acba238736c2c3e13a8c4dfb54f5dcb94eb"
|
| 75 |
+
}
|
| 76 |
+
},
|
| 77 |
+
"notes": {
|
| 78 |
+
"source_tree": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores"
|
| 79 |
+
},
|
| 80 |
+
"reference_sha256": "19c30f56db699eb4f5a642927c1cd6e173212b877c29ff20d84e60a5ecccef6d",
|
| 81 |
+
"deg_reference": {
|
| 82 |
+
"source": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scoring_cache/ji2025_chili/deg_reference.npz",
|
| 83 |
+
"sha256": "4f5eb8c8389ef1308ce3ec44be8be024cedb97de37351d109d9070c818df5a9e"
|
| 84 |
+
},
|
| 85 |
+
"gene_exclusion": null,
|
| 86 |
+
"n_genes_disease_scores": 5752,
|
| 87 |
+
"genes_per_type": {
|
| 88 |
+
"T cell": 3051,
|
| 89 |
+
"B cell": 3274,
|
| 90 |
+
"Monocyte": 3154,
|
| 91 |
+
"NK cell": 3068
|
| 92 |
+
},
|
| 93 |
+
"arms": {
|
| 94 |
+
"zs_raw": {
|
| 95 |
+
"call": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ji2025_chili/fewshot_n5/draw4",
|
| 96 |
+
"npz": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/generated/ji2025_chili/fewshot_n5/zs__raw_all.npz",
|
| 97 |
+
"npz_read_from": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/generated/ji2025_chili/fewshot_n5/zs__raw_all.npz",
|
| 98 |
+
"npz_sha256": "0d37cb4c8f0f60d75cefb35c8ec7c79c0d1cac6c891bda9205cfb1e195dd7da0",
|
| 99 |
+
"receipt_verified": true,
|
| 100 |
+
"condition": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/data/ji2025_chili/fewshot_n5/all_usable_raw.npz",
|
| 101 |
+
"condition_sha256": "78d8ac589dee9315807163c174fafde76bd890710e96c512773dfaf9151e5b86",
|
| 102 |
+
"condition_label": "all_usable_raw.npz@78d8ac58",
|
| 103 |
+
"condition_read_from": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/data/ji2025_chili/fewshot_n5/all_usable_raw.npz",
|
| 104 |
+
"condition_key": "bcast:78d8ac589dee9315",
|
| 105 |
+
"n_generated_cells": 36000,
|
| 106 |
+
"label": "Zero-shot, real bulk",
|
| 107 |
+
"seconds": 0.9
|
| 108 |
+
},
|
| 109 |
+
"zs_pseudo": {
|
| 110 |
+
"call": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ji2025_chili/fewshot_n5/draw4",
|
| 111 |
+
"npz": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/generated/ji2025_chili/fewshot_n5/zs__pseudo_all.npz",
|
| 112 |
+
"npz_read_from": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/generated/ji2025_chili/fewshot_n5/zs__pseudo_all.npz",
|
| 113 |
+
"npz_sha256": "d54f99d9b64e6b113160f858dc6049e3454393fb0211f0bb1ffffddefdbbe11b",
|
| 114 |
+
"receipt_verified": true,
|
| 115 |
+
"condition": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/data/ji2025_chili/fewshot_n5/all_usable_pseudo.npz",
|
| 116 |
+
"condition_sha256": "49033eab3e3c50d073fe36ebfddb99f34ccf1d47b2125852ab343242d148ddc9",
|
| 117 |
+
"condition_label": "all_usable_pseudo.npz@49033eab",
|
| 118 |
+
"condition_read_from": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/data/ji2025_chili/fewshot_n5/all_usable_pseudo.npz",
|
| 119 |
+
"condition_key": "bcast:49033eab3e3c50d0",
|
| 120 |
+
"n_generated_cells": 36000,
|
| 121 |
+
"label": "Zero-shot, sc pseudobulk input (reference)",
|
| 122 |
+
"seconds": 1.1
|
| 123 |
+
},
|
| 124 |
+
"zs_cal": {
|
| 125 |
+
"call": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ji2025_chili/fewshot_n5/draw4",
|
| 126 |
+
"npz": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/generated/ji2025_chili/fewshot_n5/draw4/zs__cal.npz",
|
| 127 |
+
"npz_read_from": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/generated/ji2025_chili/fewshot_n5/draw4/zs__cal.npz",
|
| 128 |
+
"npz_sha256": "9fa96848b31a3a461bc18126cfcf0eeacd143f1533085201a752654e80d13e5f",
|
| 129 |
+
"receipt_verified": true,
|
| 130 |
+
"condition": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/data/ji2025_chili/fewshot_n5/draw4/test_cal.npz",
|
| 131 |
+
"condition_sha256": "cdfdac0013eb4d3aa7262efe89348124d1601240cd295adc3803007647b74178",
|
| 132 |
+
"condition_label": "test_cal.npz@cdfdac00",
|
| 133 |
+
"condition_read_from": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/data/ji2025_chili/fewshot_n5/draw4/test_cal.npz",
|
| 134 |
+
"condition_key": "bcast:cdfdac0013eb4d3a",
|
| 135 |
+
"n_generated_cells": 36000,
|
| 136 |
+
"label": "Zero-shot + calibration",
|
| 137 |
+
"seconds": 4.4
|
| 138 |
+
},
|
| 139 |
+
"lora5": {
|
| 140 |
+
"call": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ji2025_chili/fewshot_n5/draw4",
|
| 141 |
+
"npz": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/generated/ji2025_chili/fewshot_n5/draw4/lora__raw.npz",
|
| 142 |
+
"npz_read_from": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/generated/ji2025_chili/fewshot_n5/draw4/lora__raw.npz",
|
| 143 |
+
"npz_sha256": "f9bcc2da7a5ff477e4521615ccfe8d46d49a51933181d6b481ca716e63844ee3",
|
| 144 |
+
"receipt_verified": true,
|
| 145 |
+
"condition": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/data/ji2025_chili/fewshot_n5/draw4/test_raw.npz",
|
| 146 |
+
"condition_sha256": "cc4771e4a9c4ec2ada5be09852a568ab87c74b950e63a012ef3159f6a27a9bc5",
|
| 147 |
+
"condition_label": "test_raw.npz@cc4771e4",
|
| 148 |
+
"condition_read_from": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/data/ji2025_chili/fewshot_n5/draw4/test_raw.npz",
|
| 149 |
+
"condition_key": "bcast:cc4771e4a9c4ec2a",
|
| 150 |
+
"n_generated_cells": 36000,
|
| 151 |
+
"label": "LoRA, 5 donors",
|
| 152 |
+
"seconds": 4.8
|
| 153 |
+
},
|
| 154 |
+
"scsemi5": {
|
| 155 |
+
"call": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ji2025_chili/fewshot_n5/draw4_scsemi5",
|
| 156 |
+
"npz": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/generated/ji2025_chili/fewshot_n5/draw4/scsemi5__raw.npz",
|
| 157 |
+
"npz_read_from": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/generated/ji2025_chili/fewshot_n5/draw4/scsemi5__raw.npz",
|
| 158 |
+
"npz_sha256": "a559796ae2f0e2cf8d4fc50f52fd98b81cd5910739af37b5e816297e58c9cebe",
|
| 159 |
+
"receipt_verified": true,
|
| 160 |
+
"condition": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/data/ji2025_chili/fewshot_n5/draw4/test_raw.npz",
|
| 161 |
+
"condition_sha256": "cc4771e4a9c4ec2ada5be09852a568ab87c74b950e63a012ef3159f6a27a9bc5",
|
| 162 |
+
"condition_label": "test_raw.npz@cc4771e4",
|
| 163 |
+
"condition_read_from": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/data/ji2025_chili/fewshot_n5/draw4/test_raw.npz",
|
| 164 |
+
"condition_key": "bcast:cc4771e4a9c4ec2a",
|
| 165 |
+
"n_generated_cells": 36000,
|
| 166 |
+
"label": "scSemiProfiler, 5 donors",
|
| 167 |
+
"seconds": 3.1
|
| 168 |
+
}
|
| 169 |
+
},
|
| 170 |
+
"observed_cells": {
|
| 171 |
+
"inputs_sha256": {
|
| 172 |
+
"/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/data/ji2025_chili/cells_panel6k.npz": "86a539c63a4544c52a75cd614126bf2f2ee85ef3313763ccb89291e70573140b",
|
| 173 |
+
"/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/data/ji2025_chili/cells_obs.parquet": "406ce4a632f8ec20f9c22ecd5cec1ac37fb747565d659c751036a489e11a70d5"
|
| 174 |
+
},
|
| 175 |
+
"labels_sha256": "15f939ad216a7bbb08cf65e11809ef90057c4d2e31ad36bf3b3b70b1d5a49ff7",
|
| 176 |
+
"n_cells_4types_scored": 82346
|
| 177 |
+
},
|
| 178 |
+
"params": {
|
| 179 |
+
"split_seeds": [
|
| 180 |
+
20260926,
|
| 181 |
+
20260927,
|
| 182 |
+
20260928,
|
| 183 |
+
20260929,
|
| 184 |
+
20260930
|
| 185 |
+
],
|
| 186 |
+
"split_rule": "per scored sample x contrast type: permutation from default_rng([seed, uint64 LE of sha256('<sample>|<type>')[:8]]) of its cells in canonical order; half A = first floor(n/2) positions, half B = the rest",
|
| 187 |
+
"cat_ks": [
|
| 188 |
+
10,
|
| 189 |
+
20,
|
| 190 |
+
50,
|
| 191 |
+
100,
|
| 192 |
+
200,
|
| 193 |
+
500
|
| 194 |
+
],
|
| 195 |
+
"rbo_p": 0.98,
|
| 196 |
+
"limma_filters": [
|
| 197 |
+
"nonzero",
|
| 198 |
+
"filterByExpr"
|
| 199 |
+
],
|
| 200 |
+
"primary_filter": "nonzero",
|
| 201 |
+
"fdr": 0.05,
|
| 202 |
+
"top_n": 50,
|
| 203 |
+
"min_detect_frac": 0.01,
|
| 204 |
+
"poisson_seed": 20260916,
|
| 205 |
+
"repro_tol": 1e-09
|
| 206 |
+
},
|
| 207 |
+
"limma": {
|
| 208 |
+
"rscript": "/home/sj_server_1/miniforge3/bin/Rscript",
|
| 209 |
+
"versions": [
|
| 210 |
+
"R version 4.5.2 (2025-10-31)",
|
| 211 |
+
"limma 3.66.0",
|
| 212 |
+
"edgeR 4.8.1"
|
| 213 |
+
],
|
| 214 |
+
"n_jobs": 68,
|
| 215 |
+
"n_not_ok": 0,
|
| 216 |
+
"seconds": 7.2,
|
| 217 |
+
"job_matrices": {
|
| 218 |
+
"obs|T cell": {
|
| 219 |
+
"key": "obs|T cell",
|
| 220 |
+
"n_samples": 24,
|
| 221 |
+
"n_case": 14,
|
| 222 |
+
"n_control": 10,
|
| 223 |
+
"n_zero_library_dropped": 0,
|
| 224 |
+
"defined": true
|
| 225 |
+
},
|
| 226 |
+
"obs|B cell": {
|
| 227 |
+
"key": "obs|B cell",
|
| 228 |
+
"n_samples": 24,
|
| 229 |
+
"n_case": 14,
|
| 230 |
+
"n_control": 10,
|
| 231 |
+
"n_zero_library_dropped": 0,
|
| 232 |
+
"defined": true
|
| 233 |
+
},
|
| 234 |
+
"obs|Monocyte": {
|
| 235 |
+
"key": "obs|Monocyte",
|
| 236 |
+
"n_samples": 24,
|
| 237 |
+
"n_case": 14,
|
| 238 |
+
"n_control": 10,
|
| 239 |
+
"n_zero_library_dropped": 0,
|
| 240 |
+
"defined": true
|
| 241 |
+
},
|
| 242 |
+
"obs|NK cell": {
|
| 243 |
+
"key": "obs|NK cell",
|
| 244 |
+
"n_samples": 24,
|
| 245 |
+
"n_case": 14,
|
| 246 |
+
"n_control": 10,
|
| 247 |
+
"n_zero_library_dropped": 0,
|
| 248 |
+
"defined": true
|
| 249 |
+
},
|
| 250 |
+
"obs|DC": {
|
| 251 |
+
"key": "obs|DC",
|
| 252 |
+
"n_samples": 22,
|
| 253 |
+
"n_case": 12,
|
| 254 |
+
"n_control": 10,
|
| 255 |
+
"n_zero_library_dropped": 0,
|
| 256 |
+
"defined": true
|
| 257 |
+
},
|
| 258 |
+
"gen:zs_raw|T cell": {
|
| 259 |
+
"key": "gen:zs_raw|T cell",
|
| 260 |
+
"n_samples": 24,
|
| 261 |
+
"n_case": 14,
|
| 262 |
+
"n_control": 10,
|
| 263 |
+
"n_zero_library_dropped": 0,
|
| 264 |
+
"defined": true
|
| 265 |
+
},
|
| 266 |
+
"gen:zs_raw|B cell": {
|
| 267 |
+
"key": "gen:zs_raw|B cell",
|
| 268 |
+
"n_samples": 24,
|
| 269 |
+
"n_case": 14,
|
| 270 |
+
"n_control": 10,
|
| 271 |
+
"n_zero_library_dropped": 0,
|
| 272 |
+
"defined": true
|
| 273 |
+
},
|
| 274 |
+
"gen:zs_raw|Monocyte": {
|
| 275 |
+
"key": "gen:zs_raw|Monocyte",
|
| 276 |
+
"n_samples": 24,
|
| 277 |
+
"n_case": 14,
|
| 278 |
+
"n_control": 10,
|
| 279 |
+
"n_zero_library_dropped": 0,
|
| 280 |
+
"defined": true
|
| 281 |
+
},
|
| 282 |
+
"gen:zs_raw|NK cell": {
|
| 283 |
+
"key": "gen:zs_raw|NK cell",
|
| 284 |
+
"n_samples": 24,
|
| 285 |
+
"n_case": 14,
|
| 286 |
+
"n_control": 10,
|
| 287 |
+
"n_zero_library_dropped": 0,
|
| 288 |
+
"defined": true
|
| 289 |
+
},
|
| 290 |
+
"gen:zs_raw|DC": {
|
| 291 |
+
"key": "gen:zs_raw|DC",
|
| 292 |
+
"n_samples": 24,
|
| 293 |
+
"n_case": 14,
|
| 294 |
+
"n_control": 10,
|
| 295 |
+
"n_zero_library_dropped": 0,
|
| 296 |
+
"defined": true
|
| 297 |
+
},
|
| 298 |
+
"bcast:78d8ac589dee9315": {
|
| 299 |
+
"key": "bcast:78d8ac589dee9315",
|
| 300 |
+
"n_samples": 24,
|
| 301 |
+
"n_case": 14,
|
| 302 |
+
"n_control": 10,
|
| 303 |
+
"n_zero_library_dropped": 0,
|
| 304 |
+
"defined": true
|
| 305 |
+
},
|
| 306 |
+
"gen:zs_pseudo|T cell": {
|
| 307 |
+
"key": "gen:zs_pseudo|T cell",
|
| 308 |
+
"n_samples": 24,
|
| 309 |
+
"n_case": 14,
|
| 310 |
+
"n_control": 10,
|
| 311 |
+
"n_zero_library_dropped": 0,
|
| 312 |
+
"defined": true
|
| 313 |
+
},
|
| 314 |
+
"gen:zs_pseudo|B cell": {
|
| 315 |
+
"key": "gen:zs_pseudo|B cell",
|
| 316 |
+
"n_samples": 24,
|
| 317 |
+
"n_case": 14,
|
| 318 |
+
"n_control": 10,
|
| 319 |
+
"n_zero_library_dropped": 0,
|
| 320 |
+
"defined": true
|
| 321 |
+
},
|
| 322 |
+
"gen:zs_pseudo|Monocyte": {
|
| 323 |
+
"key": "gen:zs_pseudo|Monocyte",
|
| 324 |
+
"n_samples": 24,
|
| 325 |
+
"n_case": 14,
|
| 326 |
+
"n_control": 10,
|
| 327 |
+
"n_zero_library_dropped": 0,
|
| 328 |
+
"defined": true
|
| 329 |
+
},
|
| 330 |
+
"gen:zs_pseudo|NK cell": {
|
| 331 |
+
"key": "gen:zs_pseudo|NK cell",
|
| 332 |
+
"n_samples": 24,
|
| 333 |
+
"n_case": 14,
|
| 334 |
+
"n_control": 10,
|
| 335 |
+
"n_zero_library_dropped": 0,
|
| 336 |
+
"defined": true
|
| 337 |
+
},
|
| 338 |
+
"gen:zs_pseudo|DC": {
|
| 339 |
+
"key": "gen:zs_pseudo|DC",
|
| 340 |
+
"n_samples": 24,
|
| 341 |
+
"n_case": 14,
|
| 342 |
+
"n_control": 10,
|
| 343 |
+
"n_zero_library_dropped": 0,
|
| 344 |
+
"defined": true
|
| 345 |
+
},
|
| 346 |
+
"bcast:49033eab3e3c50d0": {
|
| 347 |
+
"key": "bcast:49033eab3e3c50d0",
|
| 348 |
+
"n_samples": 24,
|
| 349 |
+
"n_case": 14,
|
| 350 |
+
"n_control": 10,
|
| 351 |
+
"n_zero_library_dropped": 0,
|
| 352 |
+
"defined": true
|
| 353 |
+
},
|
| 354 |
+
"gen:zs_cal|T cell": {
|
| 355 |
+
"key": "gen:zs_cal|T cell",
|
| 356 |
+
"n_samples": 24,
|
| 357 |
+
"n_case": 14,
|
| 358 |
+
"n_control": 10,
|
| 359 |
+
"n_zero_library_dropped": 0,
|
| 360 |
+
"defined": true
|
| 361 |
+
},
|
| 362 |
+
"gen:zs_cal|B cell": {
|
| 363 |
+
"key": "gen:zs_cal|B cell",
|
| 364 |
+
"n_samples": 24,
|
| 365 |
+
"n_case": 14,
|
| 366 |
+
"n_control": 10,
|
| 367 |
+
"n_zero_library_dropped": 0,
|
| 368 |
+
"defined": true
|
| 369 |
+
},
|
| 370 |
+
"gen:zs_cal|Monocyte": {
|
| 371 |
+
"key": "gen:zs_cal|Monocyte",
|
| 372 |
+
"n_samples": 24,
|
| 373 |
+
"n_case": 14,
|
| 374 |
+
"n_control": 10,
|
| 375 |
+
"n_zero_library_dropped": 0,
|
| 376 |
+
"defined": true
|
| 377 |
+
},
|
| 378 |
+
"gen:zs_cal|NK cell": {
|
| 379 |
+
"key": "gen:zs_cal|NK cell",
|
| 380 |
+
"n_samples": 24,
|
| 381 |
+
"n_case": 14,
|
| 382 |
+
"n_control": 10,
|
| 383 |
+
"n_zero_library_dropped": 0,
|
| 384 |
+
"defined": true
|
| 385 |
+
},
|
| 386 |
+
"gen:zs_cal|DC": {
|
| 387 |
+
"key": "gen:zs_cal|DC",
|
| 388 |
+
"n_samples": 24,
|
| 389 |
+
"n_case": 14,
|
| 390 |
+
"n_control": 10,
|
| 391 |
+
"n_zero_library_dropped": 0,
|
| 392 |
+
"defined": true
|
| 393 |
+
},
|
| 394 |
+
"bcast:cdfdac0013eb4d3a": {
|
| 395 |
+
"key": "bcast:cdfdac0013eb4d3a",
|
| 396 |
+
"n_samples": 24,
|
| 397 |
+
"n_case": 14,
|
| 398 |
+
"n_control": 10,
|
| 399 |
+
"n_zero_library_dropped": 0,
|
| 400 |
+
"defined": true
|
| 401 |
+
},
|
| 402 |
+
"gen:lora5|T cell": {
|
| 403 |
+
"key": "gen:lora5|T cell",
|
| 404 |
+
"n_samples": 24,
|
| 405 |
+
"n_case": 14,
|
| 406 |
+
"n_control": 10,
|
| 407 |
+
"n_zero_library_dropped": 0,
|
| 408 |
+
"defined": true
|
| 409 |
+
},
|
| 410 |
+
"gen:lora5|B cell": {
|
| 411 |
+
"key": "gen:lora5|B cell",
|
| 412 |
+
"n_samples": 24,
|
| 413 |
+
"n_case": 14,
|
| 414 |
+
"n_control": 10,
|
| 415 |
+
"n_zero_library_dropped": 0,
|
| 416 |
+
"defined": true
|
| 417 |
+
},
|
| 418 |
+
"gen:lora5|Monocyte": {
|
| 419 |
+
"key": "gen:lora5|Monocyte",
|
| 420 |
+
"n_samples": 24,
|
| 421 |
+
"n_case": 14,
|
| 422 |
+
"n_control": 10,
|
| 423 |
+
"n_zero_library_dropped": 0,
|
| 424 |
+
"defined": true
|
| 425 |
+
},
|
| 426 |
+
"gen:lora5|NK cell": {
|
| 427 |
+
"key": "gen:lora5|NK cell",
|
| 428 |
+
"n_samples": 24,
|
| 429 |
+
"n_case": 14,
|
| 430 |
+
"n_control": 10,
|
| 431 |
+
"n_zero_library_dropped": 0,
|
| 432 |
+
"defined": true
|
| 433 |
+
},
|
| 434 |
+
"gen:lora5|DC": {
|
| 435 |
+
"key": "gen:lora5|DC",
|
| 436 |
+
"n_samples": 24,
|
| 437 |
+
"n_case": 14,
|
| 438 |
+
"n_control": 10,
|
| 439 |
+
"n_zero_library_dropped": 0,
|
| 440 |
+
"defined": true
|
| 441 |
+
},
|
| 442 |
+
"bcast:cc4771e4a9c4ec2a": {
|
| 443 |
+
"key": "bcast:cc4771e4a9c4ec2a",
|
| 444 |
+
"n_samples": 24,
|
| 445 |
+
"n_case": 14,
|
| 446 |
+
"n_control": 10,
|
| 447 |
+
"n_zero_library_dropped": 0,
|
| 448 |
+
"defined": true
|
| 449 |
+
},
|
| 450 |
+
"gen:scsemi5|T cell": {
|
| 451 |
+
"key": "gen:scsemi5|T cell",
|
| 452 |
+
"n_samples": 24,
|
| 453 |
+
"n_case": 14,
|
| 454 |
+
"n_control": 10,
|
| 455 |
+
"n_zero_library_dropped": 0,
|
| 456 |
+
"defined": true
|
| 457 |
+
},
|
| 458 |
+
"gen:scsemi5|B cell": {
|
| 459 |
+
"key": "gen:scsemi5|B cell",
|
| 460 |
+
"n_samples": 23,
|
| 461 |
+
"n_case": 14,
|
| 462 |
+
"n_control": 9,
|
| 463 |
+
"n_zero_library_dropped": 0,
|
| 464 |
+
"defined": true
|
| 465 |
+
},
|
| 466 |
+
"gen:scsemi5|Monocyte": {
|
| 467 |
+
"key": "gen:scsemi5|Monocyte",
|
| 468 |
+
"n_samples": 24,
|
| 469 |
+
"n_case": 14,
|
| 470 |
+
"n_control": 10,
|
| 471 |
+
"n_zero_library_dropped": 0,
|
| 472 |
+
"defined": true
|
| 473 |
+
},
|
| 474 |
+
"gen:scsemi5|NK cell": {
|
| 475 |
+
"key": "gen:scsemi5|NK cell",
|
| 476 |
+
"n_samples": 23,
|
| 477 |
+
"n_case": 14,
|
| 478 |
+
"n_control": 9,
|
| 479 |
+
"n_zero_library_dropped": 0,
|
| 480 |
+
"defined": true
|
| 481 |
+
},
|
| 482 |
+
"gen:scsemi5|DC": {
|
| 483 |
+
"key": "gen:scsemi5|DC",
|
| 484 |
+
"n_samples": 23,
|
| 485 |
+
"n_case": 14,
|
| 486 |
+
"n_control": 9,
|
| 487 |
+
"n_zero_library_dropped": 0,
|
| 488 |
+
"defined": true
|
| 489 |
+
}
|
| 490 |
+
}
|
| 491 |
+
},
|
| 492 |
+
"repro_all_pass": true,
|
| 493 |
+
"split_half_seconds": 2.2,
|
| 494 |
+
"fetched_from_server2": [],
|
| 495 |
+
"code_sha256": {
|
| 496 |
+
"/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/tools/contrast_extra.py": "b1ae7ded945177e61c1b2971c419c3adf5f9eb5e8868d427d1ba9d0f15fbf482",
|
| 497 |
+
"/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/tools/contrast_extra_limma.R": "f0685f68ddfc00c01fc842073950981c176d980194de2aa70e324f197989f7dc",
|
| 498 |
+
"/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/tools/ft_common.py": "4a6366b0f22208cd58714fc0261b8840c643b9d4569704d560cfd93534cbc747",
|
| 499 |
+
"/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/tools/score_ft.py": "ec5f40b4cea6d5062d0138f3b934abb6465e34cbfeac869c8a0906924c033aec",
|
| 500 |
+
"/home/sj_server_1/PBISC/immun-pbmc-fm/bulk2sc-paper/scripts/evaluate_generated_vs_truth.py": "48b12d794782b840838853e93e0fc55fab00532c4b3698f4588e926b985d2881"
|
| 501 |
+
},
|
| 502 |
+
"seconds": 23.9
|
| 503 |
+
}
|
paper-releases/pbisc-diffusion/updates/20261002T085943Z-deck-restructure-contrast-metrics-zeroshot-len/diffusion/dataset/server_1/model8/plans/paired_finetune_intradataset_20260927/scores_contrast/ji2025_chili/fewshot_n5/draw4/rbo.csv
ADDED
|
@@ -0,0 +1,51 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
dataset,design,unit,arm,predictor,celltype,p,rbo_ext_t_desc,rbo_ext_t_asc,rbo_ext_mean_up_down,pred_defined,len_obs,len_pred
|
| 2 |
+
ji2025_chili,fewshot,fewshot_n5/draw4,zs_raw,generated:zs_raw,T cell,0.98,0.010492648220784873,0.04063793548172511,0.025565291851254994,True,5662,4178
|
| 3 |
+
ji2025_chili,fewshot,fewshot_n5/draw4,zs_raw,broadcast:all_usable_raw.npz@78d8ac58,T cell,0.98,0.06634165401090876,0.09889313890952015,0.08261739646021446,True,5662,5493
|
| 4 |
+
ji2025_chili,fewshot,fewshot_n5/draw4,zs_raw,generated:zs_raw,B cell,0.98,0.0016289251434320202,0.002866990900385815,0.002247958021908918,True,5327,3066
|
| 5 |
+
ji2025_chili,fewshot,fewshot_n5/draw4,zs_raw,broadcast:all_usable_raw.npz@78d8ac58,B cell,0.98,0.010853893359845802,0.005399255373691062,0.008126574366768433,True,5327,5493
|
| 6 |
+
ji2025_chili,fewshot,fewshot_n5/draw4,zs_raw,generated:zs_raw,Monocyte,0.98,0.03707943026045182,0.015207559211518402,0.026143494735985113,True,5675,4275
|
| 7 |
+
ji2025_chili,fewshot,fewshot_n5/draw4,zs_raw,broadcast:all_usable_raw.npz@78d8ac58,Monocyte,0.98,0.11791240711574963,0.042229233947855396,0.0800708205318025,True,5675,5493
|
| 8 |
+
ji2025_chili,fewshot,fewshot_n5/draw4,zs_raw,generated:zs_raw,NK cell,0.98,0.007125013977068676,0.014833450048442677,0.010979232012755677,True,5453,2772
|
| 9 |
+
ji2025_chili,fewshot,fewshot_n5/draw4,zs_raw,broadcast:all_usable_raw.npz@78d8ac58,NK cell,0.98,0.06941402537261439,0.017747037760836977,0.043580531566725686,True,5453,5493
|
| 10 |
+
ji2025_chili,fewshot,fewshot_n5/draw4,zs_raw,generated:zs_raw,DC,0.98,2.796601110025887e-06,0.028838098081937266,0.014420447341523646,True,5000,2109
|
| 11 |
+
ji2025_chili,fewshot,fewshot_n5/draw4,zs_raw,broadcast:all_usable_raw.npz@78d8ac58,DC,0.98,0.03321341921897606,0.11847099265414039,0.07584220593655823,True,5000,5493
|
| 12 |
+
ji2025_chili,fewshot,fewshot_n5/draw4,zs_pseudo,generated:zs_pseudo,T cell,0.98,0.027249335174317896,0.05926950142620273,0.04325941830026031,True,5662,4185
|
| 13 |
+
ji2025_chili,fewshot,fewshot_n5/draw4,zs_pseudo,broadcast:all_usable_pseudo.npz@49033eab,T cell,0.98,0.1828850188453931,0.1667649116682007,0.17482496525679692,True,5662,5745
|
| 14 |
+
ji2025_chili,fewshot,fewshot_n5/draw4,zs_pseudo,generated:zs_pseudo,B cell,0.98,0.010144791187022939,0.003384125761097666,0.006764458474060302,True,5327,3306
|
| 15 |
+
ji2025_chili,fewshot,fewshot_n5/draw4,zs_pseudo,broadcast:all_usable_pseudo.npz@49033eab,B cell,0.98,0.11221306628490003,0.0203868382749266,0.06629995227991331,True,5327,5745
|
| 16 |
+
ji2025_chili,fewshot,fewshot_n5/draw4,zs_pseudo,generated:zs_pseudo,Monocyte,0.98,0.13353060465244382,0.03193311272273841,0.08273185868759111,True,5675,3837
|
| 17 |
+
ji2025_chili,fewshot,fewshot_n5/draw4,zs_pseudo,broadcast:all_usable_pseudo.npz@49033eab,Monocyte,0.98,0.21993221713592473,0.12308794200624329,0.171510079571084,True,5675,5745
|
| 18 |
+
ji2025_chili,fewshot,fewshot_n5/draw4,zs_pseudo,generated:zs_pseudo,NK cell,0.98,0.11230822372585551,0.010059819945186852,0.061184021835521185,True,5453,3720
|
| 19 |
+
ji2025_chili,fewshot,fewshot_n5/draw4,zs_pseudo,broadcast:all_usable_pseudo.npz@49033eab,NK cell,0.98,0.21194279794855211,0.0636970979165165,0.1378199479325343,True,5453,5745
|
| 20 |
+
ji2025_chili,fewshot,fewshot_n5/draw4,zs_pseudo,generated:zs_pseudo,DC,0.98,0.00030757643938518215,0.16467652652138778,0.08249205148038648,True,5000,3269
|
| 21 |
+
ji2025_chili,fewshot,fewshot_n5/draw4,zs_pseudo,broadcast:all_usable_pseudo.npz@49033eab,DC,0.98,0.0363355376023252,0.1878287000831094,0.1120821188427173,True,5000,5745
|
| 22 |
+
ji2025_chili,fewshot,fewshot_n5/draw4,zs_cal,generated:zs_cal,T cell,0.98,0.015947069485753553,0.030158772736523207,0.02305292111113838,True,5662,4161
|
| 23 |
+
ji2025_chili,fewshot,fewshot_n5/draw4,zs_cal,broadcast:test_cal.npz@cdfdac00,T cell,0.98,0.06982717733566497,0.09606406859194606,0.08294562296380552,True,5662,5493
|
| 24 |
+
ji2025_chili,fewshot,fewshot_n5/draw4,zs_cal,generated:zs_cal,B cell,0.98,0.016061802991040895,0.004163121432741674,0.010112462211891285,True,5327,3051
|
| 25 |
+
ji2025_chili,fewshot,fewshot_n5/draw4,zs_cal,broadcast:test_cal.npz@cdfdac00,B cell,0.98,0.010793879434612021,0.004299546092925012,0.007546712763768516,True,5327,5493
|
| 26 |
+
ji2025_chili,fewshot,fewshot_n5/draw4,zs_cal,generated:zs_cal,Monocyte,0.98,0.01983706023996699,0.043577119177289035,0.03170708970862801,True,5675,3627
|
| 27 |
+
ji2025_chili,fewshot,fewshot_n5/draw4,zs_cal,broadcast:test_cal.npz@cdfdac00,Monocyte,0.98,0.10003853934929635,0.04273757243027195,0.07138805588978415,True,5675,5493
|
| 28 |
+
ji2025_chili,fewshot,fewshot_n5/draw4,zs_cal,generated:zs_cal,NK cell,0.98,0.026083094447232495,0.003713187714330956,0.014898141080781725,True,5453,2630
|
| 29 |
+
ji2025_chili,fewshot,fewshot_n5/draw4,zs_cal,broadcast:test_cal.npz@cdfdac00,NK cell,0.98,0.07855580880527195,0.020004966111183898,0.04928038745822792,True,5453,5493
|
| 30 |
+
ji2025_chili,fewshot,fewshot_n5/draw4,zs_cal,generated:zs_cal,DC,0.98,0.001852443842631469,0.03131503741467525,0.016583740628653358,True,5000,2305
|
| 31 |
+
ji2025_chili,fewshot,fewshot_n5/draw4,zs_cal,broadcast:test_cal.npz@cdfdac00,DC,0.98,0.03373426064635333,0.10529852039674474,0.06951639052154904,True,5000,5493
|
| 32 |
+
ji2025_chili,fewshot,fewshot_n5/draw4,lora5,generated:lora5,T cell,0.98,0.08351151574291918,0.04886963435371925,0.06619057504831921,True,5662,4166
|
| 33 |
+
ji2025_chili,fewshot,fewshot_n5/draw4,lora5,broadcast:test_raw.npz@cc4771e4,T cell,0.98,0.06634165401090876,0.09889313890952015,0.08261739646021446,True,5662,5493
|
| 34 |
+
ji2025_chili,fewshot,fewshot_n5/draw4,lora5,generated:lora5,B cell,0.98,0.001685387779510466,0.003384249860272998,0.002534818819891732,True,5327,2992
|
| 35 |
+
ji2025_chili,fewshot,fewshot_n5/draw4,lora5,broadcast:test_raw.npz@cc4771e4,B cell,0.98,0.010853893359845802,0.005399255373691062,0.008126574366768433,True,5327,5493
|
| 36 |
+
ji2025_chili,fewshot,fewshot_n5/draw4,lora5,generated:lora5,Monocyte,0.98,0.19303572447231893,0.09496135398134982,0.14399853922683437,True,5675,3394
|
| 37 |
+
ji2025_chili,fewshot,fewshot_n5/draw4,lora5,broadcast:test_raw.npz@cc4771e4,Monocyte,0.98,0.11791240711574963,0.042229233947855396,0.0800708205318025,True,5675,5493
|
| 38 |
+
ji2025_chili,fewshot,fewshot_n5/draw4,lora5,generated:lora5,NK cell,0.98,0.07443975882178591,0.05300622033218421,0.06372298957698506,True,5453,3132
|
| 39 |
+
ji2025_chili,fewshot,fewshot_n5/draw4,lora5,broadcast:test_raw.npz@cc4771e4,NK cell,0.98,0.06941402537261439,0.017747037760836977,0.043580531566725686,True,5453,5493
|
| 40 |
+
ji2025_chili,fewshot,fewshot_n5/draw4,lora5,generated:lora5,DC,0.98,0.0016115003339588342,0.09461946478856548,0.048115482561262156,True,5000,2853
|
| 41 |
+
ji2025_chili,fewshot,fewshot_n5/draw4,lora5,broadcast:test_raw.npz@cc4771e4,DC,0.98,0.03321341921897606,0.11847099265414039,0.07584220593655823,True,5000,5493
|
| 42 |
+
ji2025_chili,fewshot,fewshot_n5/draw4,scsemi5,generated:scsemi5,T cell,0.98,0.09492990351664586,0.01583897180666156,0.05538443766165371,True,5662,2518
|
| 43 |
+
ji2025_chili,fewshot,fewshot_n5/draw4,scsemi5,broadcast:test_raw.npz@cc4771e4,T cell,0.98,0.06634165401090876,0.09889313890952015,0.08261739646021446,True,5662,5493
|
| 44 |
+
ji2025_chili,fewshot,fewshot_n5/draw4,scsemi5,generated:scsemi5,B cell,0.98,0.028925246986467083,0.005337509401744539,0.01713137819410581,True,5327,1006
|
| 45 |
+
ji2025_chili,fewshot,fewshot_n5/draw4,scsemi5,broadcast:test_raw.npz@cc4771e4,B cell,0.98,0.010853893359845802,0.005399255373691062,0.008126574366768433,True,5327,5493
|
| 46 |
+
ji2025_chili,fewshot,fewshot_n5/draw4,scsemi5,generated:scsemi5,Monocyte,0.98,0.08299965122474531,0.03796489810386855,0.06048227466430693,True,5675,1146
|
| 47 |
+
ji2025_chili,fewshot,fewshot_n5/draw4,scsemi5,broadcast:test_raw.npz@cc4771e4,Monocyte,0.98,0.11791240711574963,0.042229233947855396,0.0800708205318025,True,5675,5493
|
| 48 |
+
ji2025_chili,fewshot,fewshot_n5/draw4,scsemi5,generated:scsemi5,NK cell,0.98,0.08905763633627532,0.014607193211560534,0.05183241477391793,True,5453,1680
|
| 49 |
+
ji2025_chili,fewshot,fewshot_n5/draw4,scsemi5,broadcast:test_raw.npz@cc4771e4,NK cell,0.98,0.06941402537261439,0.017747037760836977,0.043580531566725686,True,5453,5493
|
| 50 |
+
ji2025_chili,fewshot,fewshot_n5/draw4,scsemi5,generated:scsemi5,DC,0.98,0.022864385584719652,0.07249826251248193,0.04768132404860079,True,5000,679
|
| 51 |
+
ji2025_chili,fewshot,fewshot_n5/draw4,scsemi5,broadcast:test_raw.npz@cc4771e4,DC,0.98,0.03321341921897606,0.11847099265414039,0.07584220593655823,True,5000,5493
|
paper-releases/pbisc-diffusion/updates/20261002T085943Z-deck-restructure-contrast-metrics-zeroshot-len/diffusion/dataset/server_1/model8/plans/paired_finetune_intradataset_20260927/scores_contrast/ji2025_chili/fewshot_n5/draw4/repro.json
ADDED
|
@@ -0,0 +1,53 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"arms": {
|
| 3 |
+
"zs_raw": {
|
| 4 |
+
"contrast_max_abs_diff": 6.938893903907228e-17,
|
| 5 |
+
"contrast_all_equal": true,
|
| 6 |
+
"n_genes_equal": true,
|
| 7 |
+
"welch_lists_equal": true,
|
| 8 |
+
"welch_counts_equal": true,
|
| 9 |
+
"pass": true
|
| 10 |
+
},
|
| 11 |
+
"zs_pseudo": {
|
| 12 |
+
"contrast_max_abs_diff": 8.326672684688674e-17,
|
| 13 |
+
"contrast_all_equal": true,
|
| 14 |
+
"n_genes_equal": true,
|
| 15 |
+
"welch_lists_equal": true,
|
| 16 |
+
"welch_counts_equal": true,
|
| 17 |
+
"pass": true
|
| 18 |
+
},
|
| 19 |
+
"zs_cal": {
|
| 20 |
+
"contrast_max_abs_diff": 9.71445146547012e-17,
|
| 21 |
+
"contrast_all_equal": true,
|
| 22 |
+
"n_genes_equal": true,
|
| 23 |
+
"welch_lists_equal": true,
|
| 24 |
+
"welch_counts_equal": true,
|
| 25 |
+
"pass": true
|
| 26 |
+
},
|
| 27 |
+
"lora5": {
|
| 28 |
+
"contrast_max_abs_diff": 8.326672684688674e-17,
|
| 29 |
+
"contrast_all_equal": true,
|
| 30 |
+
"n_genes_equal": true,
|
| 31 |
+
"welch_lists_equal": true,
|
| 32 |
+
"welch_counts_equal": true,
|
| 33 |
+
"pass": true
|
| 34 |
+
},
|
| 35 |
+
"scsemi5": {
|
| 36 |
+
"contrast_max_abs_diff": 8.941957417574198e-17,
|
| 37 |
+
"contrast_all_equal": true,
|
| 38 |
+
"n_genes_equal": true,
|
| 39 |
+
"welch_lists_equal": true,
|
| 40 |
+
"welch_counts_equal": true,
|
| 41 |
+
"pass": true
|
| 42 |
+
}
|
| 43 |
+
},
|
| 44 |
+
"observed_split_half_full_aggregates": {
|
| 45 |
+
"n_equal": true,
|
| 46 |
+
"det_equal": true,
|
| 47 |
+
"sum_equal_float32": true,
|
| 48 |
+
"cp10k_max_abs_diff_float32": 0.0,
|
| 49 |
+
"cp10k_equal_float32": true
|
| 50 |
+
},
|
| 51 |
+
"comparable_with_scorer": true,
|
| 52 |
+
"all_pass": true
|
| 53 |
+
}
|