Archive 4 checkpoints (1-4)

paper-releases/pbisc-diffusion/updates/20261008T050202Z-scsemi-imperial-deck/diffusion/dataset/server_1/model8/plans/paired_finetune_intradataset_20260927/scores/imperial_eskd/scsemi_cv_20261002/pooled/arms/scsemi__raw/generated_cells.parquet

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paper-releases/pbisc-diffusion/updates/20261008T050202Z-scsemi-imperial-deck/diffusion/dataset/server_1/model8/plans/paired_finetune_intradataset_20260927/scores/imperial_eskd/scsemi_cv_20261002/pooled/arms/scsemi__raw/labels/labels.manifest.json

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+  "training_source": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/aifi_scanvi_rebuild_20260916/reference/aifi_reference_f01common.h5ad",
+  "target_truth_used_for_fitting": false,
+  "classifier": "aifi_scanvi_rebuild_20260916_frozen_predict[aifi_scanvi_f01common_v1]",
+  "labels": [
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+    "B cell",
+    "Monocyte",
+    "NK cell",
+    "DC",
+    "Other"
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+  "l2_labels": [
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+    "CD14 monocyte",
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+    "CD56bright NK cell",
+    "CD56dim NK cell",
+    "CD8aa",
+    "DN T cell",
+    "Effector B cell",
+    "Erythrocyte",
+    "ILC",
+    "Intermediate monocyte",
+    "MAIT",
+    "Memory B cell",
+    "Memory CD4 T cell",
+    "Memory CD8 T cell",
+    "Naive B cell",
+    "Naive CD4 T cell",
+    "Naive CD8 T cell",
+    "Plasma cell",
+    "Platelet",
+    "Progenitor cell",
+    "Proliferating NK cell",
+    "Proliferating T cell",
+    "Transitional B cell",
+    "Treg",
+    "cDC1",
+    "cDC2",
+    "gdT",
+    "pDC"
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+  "n_cells": 235500,
+  "n_genes": 1005,
+  "note": "Evaluation-only annotation with a frozen AIFI scANVI (zero query-training epochs); L1 outside PBMC5 -> Other, never dropped.",
+  "label_source_column": "AIFI_L2 (reference) -> AIFI_L2_TO_L1 -> PBMC5 + Other",
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+  "subset": false,
+  "evaluator_aligned": true,
+  "gene_space": {
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+    "query_genes": 1005,
+    "model_genes_missing_from_query_zero_padded": 0,
+    "query_genes_outside_model_dropped": 0,
+    "rule": "query is subset/reordered to the model's gene list; zero-padding of absent model genes is refused unless --allow-missing-genes"
+  },
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+  "query_build": {
+    "kind": "generated_npz",
+    "poisson_note": "one draw over the whole NPZ, then the scored donors' rows",
+    "readout": "poisson",
+    "seed": 20260916,
+    "set": "scsemi__raw",
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+    "held_out_summary": {
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+      "Erythrocyte": 1601,
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+      "Transitional B cell": 1243,
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+      "Proliferating NK cell": 1190,
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+      "pDC": 604,
+      "ILC": 481,
+      "DN T cell": 439,
+      "cDC1": 407,
+      "Proliferating T cell": 313,
+      "ASDC": 184,
+      "Progenitor cell": 19
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+  "confidence": {
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+    "mean_l1_mass": 0.9852298498153687,
+    "frac_l2_max_prob_ge_0.5": 0.9820169851380043
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+  "timings_s": {
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+    "total": 3.0
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+  "versions": {
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+    "torch": "2.11.0+cu130",
+    "anndata": "0.12.19"
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+  "device": "cpu",
+  "created_at_utc": "2026-10-08T04:48:13.795688+00:00"
+}

paper-releases/pbisc-diffusion/updates/20261008T050202Z-scsemi-imperial-deck/diffusion/dataset/server_1/model8/plans/paired_finetune_intradataset_20260927/scores/imperial_eskd/scsemi_cv_20261002/pooled/arms/scsemi__raw/labels/labels.parquet

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paper-releases/pbisc-diffusion/updates/20261008T050202Z-scsemi-imperial-deck/diffusion/dataset/server_1/model8/plans/paired_finetune_intradataset_20260927/scores/imperial_eskd/scsemi_cv_20261002/pooled/contrast.csv

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+scsemi__raw,Monocyte,mean_cp10k,2877,0.6562786961628838,0.7184291928055079,0.37668545742458776,0.6303617332666909,112,34,111,34,80851,31199,,,,,,,,,,,
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