junidude14 commited on
Commit
2d6c118
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Archive 4 checkpoints (1-4)

Browse files
paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/scsemi_budget_20261002/fold3/contrast.csv ADDED
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1
+ arm,celltype,statistic,n_genes,r_generated,r_broadcast,partial_r_generated_given_broadcast,r_generated_vs_broadcast,n_case_donors_obs,n_control_donors_obs,n_case_donors_gen,n_control_donors_gen,n_cells_obs,n_cells_gen,deg_scored,top50_overlap,top50_jaccard,obs_top_list_size,gen_top_list_size,n_sig_obs,n_sig_gen,top50_overlap_broadcast,top50_jaccard_broadcast,broadcast_top_list_size,n_sig_broadcast
2
+ scsemi_n5__raw,T cell,mean_cp10k,3267,0.4507006514098265,0.4054314090999793,0.35974517347399854,0.3526501880531256,13,3,13,3,48746,15181,,,,,,,,,,,
3
+ scsemi_n5__raw,T cell,pseudobulk_log1p_cpm,3267,0.14323057464018318,0.43288100523285106,0.06823239769100144,0.19141458321936727,13,3,13,3,48746,15181,,,,,,,,,,,
4
+ scsemi_n5__raw,B cell,mean_cp10k,3235,0.37090193325084925,0.28791499229461276,0.3109892576073328,0.3021899070636693,13,3,13,3,20084,3154,,,,,,,,,,,
5
+ scsemi_n5__raw,B cell,pseudobulk_log1p_cpm,3235,0.08005792067309182,0.22618496973249358,0.06090500209756478,0.0927880035080931,13,3,13,3,20084,3154,,,,,,,,,,,
6
+ scsemi_n5__raw,Monocyte,mean_cp10k,3323,0.2676398330486358,0.42584414362557405,0.18318190269913762,0.25182681606544294,13,3,13,3,19536,3134,,,,,,,,,,,
7
+ scsemi_n5__raw,Monocyte,pseudobulk_log1p_cpm,3323,-0.05036745263499858,0.49229818193386826,-0.10542183252331752,0.08343432840108057,13,3,13,3,19536,3134,,,,,,,,,,,
8
+ scsemi_n5__raw,NK cell,mean_cp10k,3307,0.35750930496934,0.3851833932466608,0.2571030783977026,0.35147537498543635,13,3,13,3,7787,1116,,,,,,,,,,,
9
+ scsemi_n5__raw,NK cell,pseudobulk_log1p_cpm,3307,0.11123510236017743,0.2648524879635766,0.06836379952307392,0.17492394644423018,13,3,13,3,7787,1116,,,,,,,,,,,
10
+ scsemi_n5__raw,T cell,welch_top50_deg,5975,,,,,13,3,13,3,48746,15181,True,0,0.0,50,0,97,0,0,0.0,0,0
11
+ scsemi_n5__raw,B cell,welch_top50_deg,5975,,,,,13,3,13,3,20084,3154,True,0,0.0,50,0,122,0,0,0.0,0,0
12
+ scsemi_n5__raw,Monocyte,welch_top50_deg,5975,,,,,13,3,13,3,19536,3134,True,0,0.0,5,0,5,0,0,0.0,0,0
13
+ scsemi_n5__raw,NK cell,welch_top50_deg,5975,,,,,13,3,13,3,7787,1116,True,0,0.0,30,0,30,0,0,0.0,0,0
14
+ scsemi_n5__raw,DC,welch_top50_deg,5975,,,,,12,3,13,3,284,272,True,0,0.0,50,0,63,0,0,0.0,0,0
15
+ scsemi_n10__raw,T cell,mean_cp10k,3267,0.4181803303780781,0.4054314090999793,0.3075259366735005,0.3942194521139218,13,3,13,3,48746,16003,,,,,,,,,,,
16
+ scsemi_n10__raw,T cell,pseudobulk_log1p_cpm,3267,0.2140474109800964,0.43288100523285106,0.13228907194061443,0.22612228916035582,13,3,13,3,48746,16003,,,,,,,,,,,
17
+ scsemi_n10__raw,B cell,mean_cp10k,3235,0.4590264551589571,0.28791499229461276,0.4002492191934191,0.34451327647050767,13,3,13,3,20084,3278,,,,,,,,,,,
18
+ scsemi_n10__raw,B cell,pseudobulk_log1p_cpm,3235,0.1571006803083457,0.22618496973249358,0.1324720170043179,0.12881887572761314,13,3,13,3,20084,3278,,,,,,,,,,,
19
+ scsemi_n10__raw,Monocyte,mean_cp10k,3323,0.42541654201021734,0.42584414362557405,0.3372899290237061,0.32004556611322116,13,3,11,3,19536,2623,,,,,,,,,,,
20
+ scsemi_n10__raw,Monocyte,pseudobulk_log1p_cpm,3323,0.15871076369121775,0.49229818193386826,0.09423892013358275,0.15785377407436058,13,3,11,3,19536,2623,,,,,,,,,,,
21
+ scsemi_n10__raw,NK cell,mean_cp10k,3307,0.3614289392453883,0.3851833932466608,0.27632726636191607,0.3086060408821277,13,3,12,3,7787,873,,,,,,,,,,,
22
+ scsemi_n10__raw,NK cell,pseudobulk_log1p_cpm,3307,0.13186026212563784,0.2648524879635766,0.10538583037734166,0.116794700660289,13,3,12,3,7787,873,,,,,,,,,,,
23
+ scsemi_n10__raw,T cell,welch_top50_deg,5975,,,,,13,3,13,3,48746,16003,True,0,0.0,50,0,97,0,0,0.0,0,0
24
+ scsemi_n10__raw,B cell,welch_top50_deg,5975,,,,,13,3,13,3,20084,3278,True,0,0.0,50,0,122,0,0,0.0,0,0
25
+ scsemi_n10__raw,Monocyte,welch_top50_deg,5975,,,,,13,3,11,3,19536,2623,True,0,0.0,5,0,5,0,0,0.0,0,0
26
+ scsemi_n10__raw,NK cell,welch_top50_deg,5975,,,,,13,3,12,3,7787,873,True,0,0.0,30,0,30,0,0,0.0,0,0
27
+ scsemi_n10__raw,DC,welch_top50_deg,5975,,,,,12,3,12,3,284,288,True,0,0.0,50,1,63,1,0,0.0,0,0
28
+ scsemi_n20__raw,T cell,mean_cp10k,3267,0.2778325810033801,0.4054314090999793,0.12902600389510394,0.42146149323532883,13,3,13,3,48746,13809,,,,,,,,,,,
29
+ scsemi_n20__raw,T cell,pseudobulk_log1p_cpm,3267,0.05894854330112031,0.43288100523285106,-0.042880787824875845,0.2232209954998953,13,3,13,3,48746,13809,,,,,,,,,,,
30
+ scsemi_n20__raw,B cell,mean_cp10k,3235,0.34883384951989704,0.28791499229461276,0.26894213926509025,0.38658522209185203,13,3,13,3,20084,3876,,,,,,,,,,,
31
+ scsemi_n20__raw,B cell,pseudobulk_log1p_cpm,3235,0.08489907389508387,0.22618496973249358,0.053251876404767994,0.14856373355653127,13,3,13,3,20084,3876,,,,,,,,,,,
32
+ scsemi_n20__raw,Monocyte,mean_cp10k,3323,0.29240759537525,0.42584414362557405,0.1682042511050993,0.35216287130170026,13,3,12,3,19536,3728,,,,,,,,,,,
33
+ scsemi_n20__raw,Monocyte,pseudobulk_log1p_cpm,3323,0.10726199609881307,0.49229818193386826,-0.018828157762670855,0.25011192919017056,13,3,12,3,19536,3728,,,,,,,,,,,
34
+ scsemi_n20__raw,NK cell,mean_cp10k,3307,0.3437414609959126,0.3851833932466608,0.258576979627637,0.3017829246474652,13,3,12,2,7787,800,,,,,,,,,,,
35
+ scsemi_n20__raw,NK cell,pseudobulk_log1p_cpm,3307,0.07466422239678668,0.2648524879635766,0.04498988577029098,0.11927651953815117,13,3,12,2,7787,800,,,,,,,,,,,
36
+ scsemi_n20__raw,T cell,welch_top50_deg,5975,,,,,13,3,13,3,48746,13809,True,0,0.0,50,0,97,0,0,0.0,0,0
37
+ scsemi_n20__raw,B cell,welch_top50_deg,5975,,,,,13,3,13,3,20084,3876,True,0,0.0,50,0,122,0,0,0.0,0,0
38
+ scsemi_n20__raw,Monocyte,welch_top50_deg,5975,,,,,13,3,12,3,19536,3728,True,0,0.0,5,0,5,0,0,0.0,0,0
39
+ scsemi_n20__raw,NK cell,welch_top50_deg,5975,,,,,13,3,12,2,7787,800,True,0,0.0,30,7,30,7,0,0.0,0,0
40
+ scsemi_n20__raw,DC,welch_top50_deg,5975,,,,,12,3,12,3,284,365,True,0,0.0,50,0,63,0,0,0.0,0,0
41
+ scsemi_n40__raw,T cell,mean_cp10k,3267,0.03832605640571333,0.4054314090999793,-0.13807979039876855,0.3822209436574146,13,3,13,3,48746,13136,,,,,,,,,,,
42
+ scsemi_n40__raw,T cell,pseudobulk_log1p_cpm,3267,-0.024785827282428112,0.43288100523285106,-0.13693576840217628,0.22086143349863796,13,3,13,3,48746,13136,,,,,,,,,,,
43
+ scsemi_n40__raw,B cell,mean_cp10k,3235,0.18414552018781413,0.28791499229461276,0.07077561687305799,0.4266750053251736,13,3,13,3,20084,2898,,,,,,,,,,,
44
+ scsemi_n40__raw,B cell,pseudobulk_log1p_cpm,3235,0.0392334841273884,0.22618496973249358,-0.01914033061884717,0.2532008775851202,13,3,13,3,20084,2898,,,,,,,,,,,
45
+ scsemi_n40__raw,Monocyte,mean_cp10k,3323,0.11939204680423794,0.42584414362557405,-0.03635914953913322,0.35265511906227,13,3,13,3,19536,4887,,,,,,,,,,,
46
+ scsemi_n40__raw,Monocyte,pseudobulk_log1p_cpm,3323,0.0694834365015101,0.49229818193386826,-0.09165125887576528,0.29593028618103817,13,3,13,3,19536,4887,,,,,,,,,,,
47
+ scsemi_n40__raw,NK cell,mean_cp10k,3307,0.4051314266580224,0.3851833932466608,0.3170364823773802,0.33651835775544264,13,3,13,2,7787,848,,,,,,,,,,,
48
+ scsemi_n40__raw,NK cell,pseudobulk_log1p_cpm,3307,0.09791071691880611,0.2648524879635766,0.06522846208931166,0.13434589328532184,13,3,13,2,7787,848,,,,,,,,,,,
49
+ scsemi_n40__raw,T cell,welch_top50_deg,5975,,,,,13,3,13,3,48746,13136,True,0,0.0,50,0,97,0,0,0.0,0,0
50
+ scsemi_n40__raw,B cell,welch_top50_deg,5975,,,,,13,3,13,3,20084,2898,True,0,0.0,50,0,122,0,0,0.0,0,0
51
+ scsemi_n40__raw,Monocyte,welch_top50_deg,5975,,,,,13,3,13,3,19536,4887,True,0,0.0,5,2,5,2,0,0.0,0,0
52
+ scsemi_n40__raw,NK cell,welch_top50_deg,5975,,,,,13,3,13,2,7787,848,True,0,0.0,30,12,30,12,0,0.0,0,0
53
+ scsemi_n40__raw,DC,welch_top50_deg,5975,,,,,12,3,12,3,284,441,True,0,0.0,50,1,63,1,0,0.0,0,0
paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/scsemi_budget_20261002/fold3/per_donor.csv ADDED
@@ -0,0 +1,65 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ arm,donor,group,n_generated_cells,n_observed_cells,n_reference_cells,gen_T cell,obs_T cell,gen_B cell,obs_B cell,gen_Monocyte,obs_Monocyte,gen_NK cell,obs_NK cell,gen_DC,obs_DC,gen_Other,obs_Other,comp_l1,comp_l1_obs_loo_null,pb_r,pb_own_rank,pb_top1,precision,coverage,precision_depth_matched,coverage_depth_matched,mono_pct_gen,mono_pct_obs,median_umi_gen,median_umi_obs
2
+ scsemi_n5__raw,Abd-S102,adult_sepsis,1500,9512,150,0.8493333333333334,0.47981497056349875,0.01,0.39318755256518084,0.019333333333333334,0.0053616484440706475,0.08,0.095878889823381,0.002,0.0007359125315391085,0.03933333333333333,0.02502102607232969,0.7981328847771237,0.5809371755543881,0.5754683924251346,5,False,0.9133333333333333,0.13333333333333333,0.6,0.36666666666666664,1.9333333333333333,0.5361648444070648,1823.0,1646.0
3
+ scsemi_n5__raw,Abd-S103,adult_sepsis,1500,9423,150,0.7233333333333334,0.4813753581661891,0.23933333333333334,0.14782977820227103,0.0006666666666666666,0.0024408362517245037,0.018666666666666668,0.04393505253104107,0.0026666666666666666,0.00021224663058473945,0.015333333333333332,0.3242067282181895,0.6718319006685769,0.6326678068482368,0.6805841431844334,1,True,0.9733333333333334,0.4666666666666667,0.6266666666666667,0.5266666666666666,0.06666666666666667,0.24408362517245036,1820.0,971.0
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+ scsemi_n5__raw,Abd-S51,adult_sepsis,1500,6865,150,0.312,0.25273124544792425,0.082,0.269482884195193,0.49,0.3551347414420976,0.02666666666666667,0.03670793882010197,0.01,0.0014566642388929353,0.07933333333333334,0.08448652585579024,0.40535469774217037,0.49873446759411355,0.5656905459193124,3,False,1.0,0.15333333333333332,0.8133333333333334,0.4666666666666667,49.0,35.51347414420976,1820.0,1849.0
5
+ scsemi_n5__raw,Abd-S83,adult_sepsis,1500,6209,150,0.816,0.3924947656627476,0.006666666666666667,0.16991464003865356,0.020666666666666667,0.049927524561120956,0.08266666666666667,0.3013367692059913,0.0026666666666666666,0.0009663391850539539,0.07133333333333333,0.0853599613464326,0.8504111236377302,0.5160252489243918,0.5859229980489643,5,False,0.5666666666666667,0.14666666666666667,0.29333333333333333,0.31333333333333335,2.0666666666666664,4.992752456112096,1822.0,1649.0
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+ scsemi_n5__raw,HC12,adult_HC,1500,3720,150,0.646,0.5456989247311828,0.054,0.05725806451612903,0.13333333333333333,0.14623655913978495,0.11133333333333334,0.2196236559139785,0.02266666666666667,0.008870967741935484,0.03266666666666666,0.022311827956989248,0.24890322580645166,0.5323006254835988,0.6344429078320754,9,False,0.96,0.06666666666666667,0.52,0.32666666666666666,13.333333333333334,14.623655913978496,1822.0,2457.5
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+ scsemi_n5__raw,IC22,adult_ICU_ctrl,1500,2107,150,0.8806666666666667,0.16753678215472234,0.009333333333333334,0.01613668723303275,0.011333333333333334,0.722828666350261,0.076,0.019933554817275746,0.002,0.04129093497864262,0.020666666666666667,0.0322733744660655,1.5383926593893371,1.1255936603700172,0.5716267695914091,11,False,0.8866666666666667,0.04,0.5666666666666667,0.29333333333333333,1.1333333333333333,72.2828666350261,1822.0,3217.0
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+ scsemi_n5__raw,PIC01,ped_ICU_ctrl,1500,8345,150,0.716,0.647813061713601,0.10733333333333334,0.07070101857399641,0.054,0.12055122828040743,0.044,0.11024565608148593,0.022,0.004313960455362493,0.056666666666666664,0.04637507489514679,0.26559376872378665,0.5079475218536647,0.5925775406886711,10,False,0.9666666666666667,0.08666666666666667,0.5066666666666667,0.3,5.4,12.055122828040743,1821.5,2157.0
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+ scsemi_n5__raw,Res-PS02,ped_sepsis,1500,6473,150,0.306,0.5892167464854009,0.6566666666666666,0.33848292909006644,0.0026666666666666666,0.012050054070755446,0.026,0.05051753437355168,0.006,0.0,0.0026666666666666666,0.009732735980225553,0.6483674751532004,0.6592152399467534,0.7617833052194503,2,False,0.8533333333333334,0.16,0.6266666666666667,0.2733333333333333,0.26666666666666666,1.2050054070755445,1823.0,1680.0
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+ scsemi_n5__raw,Res-PS16,ped_sepsis,1500,7403,150,0.41333333333333333,0.4078076455491017,0.436,0.5172227475347831,0.08733333333333333,0.0009455626097528029,0.006666666666666667,0.017695528839659597,0.01,0.00013508037282182898,0.04666666666666667,0.05619343509388086,0.2035567562699806,0.7266430987733835,0.5611159258198432,15,False,1.0,0.24,0.9533333333333334,0.41333333333333333,8.733333333333333,0.09455626097528029,1819.0,1895.0
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+ scsemi_n5__raw,Res-PS21,ped_sepsis,1500,6455,150,0.8813333333333333,0.2689388071262587,0.08666666666666667,0.19550735863671573,0.008666666666666666,0.339426800929512,0.015333333333333332,0.06893880712625872,0.0006666666666666666,0.002168861347792409,0.007333333333333333,0.12501936483346243,1.2247890524141494,0.3938797964615466,0.5491487698404381,13,False,1.0,0.15333333333333332,0.8466666666666667,0.38,0.8666666666666666,33.9426800929512,1822.0,1720.0
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+ scsemi_n5__raw,Res-S125,adult_sepsis,1500,3975,150,0.5186666666666667,0.510188679245283,0.13266666666666665,0.24125786163522012,0.116,0.14440251572327045,0.03133333333333333,0.0810062893081761,0.030666666666666665,0.0015094339622641509,0.17066666666666666,0.021635220125786163,0.3733333333333334,0.28988953232584097,0.5343280424763404,3,False,1.0,0.08,0.68,0.32,11.600000000000001,14.440251572327046,1822.0,1933.0
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+ scsemi_n5__raw,Res-S136,adult_sepsis,1500,2882,150,0.31733333333333336,0.3650242886884108,0.07333333333333333,0.04996530187369882,0.5113333333333333,0.4961832061068702,0.03,0.034004163775156145,0.012,0.004857737682165163,0.056,0.04996530187369882,0.1033902382604672,0.5643591909516315,0.6174114213003242,1,True,0.9933333333333333,0.04,0.76,0.38666666666666666,51.13333333333333,49.61832061068702,1821.0,3386.0
14
+ scsemi_n5__raw,Res-S149,adult_sepsis,1500,7304,150,0.312,0.37089266155531214,0.06733333333333333,0.10282037239868565,0.5026666666666667,0.40963855421686746,0.04,0.06489594742606791,0.017333333333333333,0.003696604600219058,0.06066666666666667,0.04805585980284775,0.23855129609346482,0.37943529483069355,0.6404066450633925,1,True,0.9933333333333333,0.13333333333333333,0.64,0.35333333333333333,50.26666666666667,40.963855421686745,1822.0,2356.0
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paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/scsemi_budget_20261002/fold4/arms/scsemi_n10__raw/deg_top50_lists.csv ADDED
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