Archive 4 checkpoints (1-4)

paper-releases/pbisc-diffusion/updates/20261001T200638Z-extra-realism-metrics/diffusion/dataset/server_1/model8/plans/paired_finetune_intradataset_20260927/scores_extra/ji2025_chili/fewshot_n5/draw2/en.csv

@@ -0,0 +1,25 @@
+dataset,design,unit,set,cellset,distance,n_samples,n_cells_real,n_cells_gen,n_pcs,lb,ub,dif_mean,en,lb_exact,lb_queries,n_representative_rows,en_reps_at_lb,seconds
+ji2025_chili,fewshot,draw2,real_R2,pc,sq,26,3900,3900,100,230.6475790591488,365.4697274609231,257.989725431884,0.20280159229665085,True,"[3900, 3900]",,,5.4
+ji2025_chili,fewshot,draw2,real_R2,pc,l2,26,3900,3900,100,14.91289211507242,18.702509742088832,15.718129097202198,0.2124850212826736,True,"[3900, 3900]",,,5.4
+ji2025_chili,fewshot,draw2,real_R2,all,sq,26,47904,47922,100,176.78208949374005,255.79179041417618,184.26541645212134,0.09471402715366702,False,"[20000, 20000]",,,14.6
+ji2025_chili,fewshot,draw2,real_R2,all,l2,26,47904,47922,100,13.12115570033804,15.715734746264657,13.373777973908954,0.09736541808873417,False,"[20000, 20000]",,,14.6
+ji2025_chili,fewshot,draw2,zs_raw,pc,sq,26,3900,3900,100,326.85340762207227,295.3324002453677,865.5590044347308,-17.090367397673525,True,"[3900, 3900]",,,6.1
+ji2025_chili,fewshot,draw2,zs_raw,pc,l2,26,3900,3900,100,17.43496425410729,16.73587937659103,28.95880096287629,-16.48417392421848,True,"[3900, 3900]",,,6.1
+ji2025_chili,fewshot,draw2,zs_raw,all,sq,26,95826,39000,100,207.154134905281,215.0903751275723,652.3651078253723,56.09847490119878,False,"[20000, 20000]",,,19.1
+ji2025_chili,fewshot,draw2,zs_raw,all,l2,26,95826,39000,100,14.011973499023881,14.427770804619602,25.21672498034494,26.947628881980844,False,"[20000, 20000]",,,19.1
+ji2025_chili,fewshot,draw2,zs_cal,pc,sq,26,3900,3900,100,292.8128454719688,314.95748398979725,680.3867271542337,17.50192857608546,True,"[3900, 3900]",,,5.6
+ji2025_chili,fewshot,draw2,zs_cal,pc,l2,26,3900,3900,100,16.637564313781194,17.312434044342528,25.654634751878252,13.361201473056095,True,"[3900, 3900]",,,5.6
+ji2025_chili,fewshot,draw2,zs_cal,all,sq,26,95826,39000,100,196.88432433382116,221.66402193444563,537.9995575384178,13.765915900281211,False,"[20000, 20000]",,,17.8
+ji2025_chili,fewshot,draw2,zs_cal,all,l2,26,95826,39000,100,13.741705790812517,14.653919060462478,22.903471151411033,10.043446708590546,False,"[20000, 20000]",,,17.8
+ji2025_chili,fewshot,draw2,lora5,pc,sq,26,3900,3900,100,273.9562080301166,342.0824288041172,463.4902621390616,2.782101398780041,True,"[3900, 3900]",,,6.9
+ji2025_chili,fewshot,draw2,lora5,pc,l2,26,3900,3900,100,16.269708980690012,18.10415044216404,21.139438754209436,2.6546117037751915,True,"[3900, 3900]",,,6.9
+ji2025_chili,fewshot,draw2,lora5,all,sq,26,95826,39000,100,194.56349525667275,231.42019261214384,353.4543839548881,4.311045212916486,False,"[20000, 20000]",,,21.4
+ji2025_chili,fewshot,draw2,lora5,all,l2,26,95826,39000,100,13.738839265375208,15.001205573430848,18.51933476330175,3.786932103162434,False,"[20000, 20000]",,,21.4
+ji2025_chili,fewshot,draw2,zs_pseudo,pc,sq,26,3900,3900,100,217.67749454850457,359.91292396261906,369.1607156168869,1.065017497344794,True,"[3900, 3900]",,,5.9
+ji2025_chili,fewshot,draw2,zs_pseudo,pc,l2,26,3900,3900,100,14.396173758983366,18.560278924844276,18.814006167772128,1.0609319968688626,True,"[3900, 3900]",,,5.9
+ji2025_chili,fewshot,draw2,zs_pseudo,all,sq,26,95826,39000,100,166.5910254404308,234.2441509081405,291.19141641820255,1.8417536531588996,False,"[20000, 20000]",,,23.6
+ji2025_chili,fewshot,draw2,zs_pseudo,all,l2,26,95826,39000,100,12.70418566513364,15.097195663108428,16.774194024020353,1.7007903695894184,False,"[20000, 20000]",,,23.6
+ji2025_chili,fewshot,draw2,scsemi5,pc,sq,26,3900,3900,100,170.89014597718676,355.25980690284155,600.9887835345376,2.332805925866424,True,"[3900, 3900]",7.0,1.8379683052280917,7.1
+ji2025_chili,fewshot,draw2,scsemi5,pc,l2,26,3900,3900,100,12.469831694322437,18.39679956732892,23.934720831167514,1.9343599261032367,True,"[3900, 3900]",7.0,1.52404115389952,7.1
+ji2025_chili,fewshot,draw2,scsemi5,all,sq,26,95826,39000,100,143.30580290915805,227.00270768273822,553.7029330894276,4.903372846229981,False,"[20000, 20000]",7.0,3.86326345460544,20.9
+ji2025_chili,fewshot,draw2,scsemi5,all,l2,26,95826,39000,100,11.581093746986271,14.826548197688501,22.899002298521616,3.487310859989562,False,"[20000, 20000]",7.0,2.747578253325109,20.9

paper-releases/pbisc-diffusion/updates/20261001T200638Z-extra-realism-metrics/diffusion/dataset/server_1/model8/plans/paired_finetune_intradataset_20260927/scores_extra/ji2025_chili/fewshot_n5/draw2/en_per_sample.csv

@@ -0,0 +1,625 @@
+dataset,design,unit,set,cellset,distance,donor,n_real,n_gen,partner,dif,en_i
+ji2025_chili,fewshot,draw2,real_R2,pc,sq,N064_TOL,150,150,N012_TOL,345.6990937945621,0.8533576723058598
+ji2025_chili,fewshot,draw2,real_R2,pc,sq,N064_FU1,150,150,N002_FU1,325.70742828053443,0.7050759118457619
+ji2025_chili,fewshot,draw2,real_R2,pc,sq,N038_BC,150,150,N055_AC,243.94540670506007,0.09863236718557043
+ji2025_chili,fewshot,draw2,real_R2,pc,sq,N038_AC,150,150,N064_FU1,260.45527106148296,0.2210889854203057
+ji2025_chili,fewshot,draw2,real_R2,pc,sq,N055_AC,150,150,N012_FU1,246.22738051481141,0.11555817527276242
+ji2025_chili,fewshot,draw2,real_R2,pc,sq,N136_TOL,150,150,N129_BC,200.43484197065706,-0.2240932773037915
+ji2025_chili,fewshot,draw2,real_R2,pc,sq,N136_FU1,150,150,N138_TOL,177.18561328900043,-0.39653696669207505
+ji2025_chili,fewshot,draw2,real_R2,pc,sq,N138_TOL,150,150,N002_FU1,252.4959535439182,0.16205330313874364
+ji2025_chili,fewshot,draw2,real_R2,pc,sq,N138_FU1,150,150,N150_BC,219.36444809879941,-0.08368900135551388
+ji2025_chili,fewshot,draw2,real_R2,pc,sq,N128_BC,150,150,N064_FU1,256.2351738125369,0.18978776897350924
+ji2025_chili,fewshot,draw2,real_R2,pc,sq,N128_AC,150,150,N138_FU1,246.67900753730123,0.11890797371347524
+ji2025_chili,fewshot,draw2,real_R2,pc,sq,N129_BC,150,150,N002_TOL,243.61769803282883,0.09620169332288538
+ji2025_chili,fewshot,draw2,real_R2,pc,sq,N129_AC,150,150,N002_FU1,272.6412729860196,0.31147474227845906
+ji2025_chili,fewshot,draw2,real_R2,pc,sq,N150_BC,150,150,N022_FU1,168.5302542829984,-0.46073531324422146
+ji2025_chili,fewshot,draw2,real_R2,pc,sq,N158_AC,150,150,N038_BC,271.4864855939349,0.3029094775517511
+ji2025_chili,fewshot,draw2,real_R2,pc,sq,N159_BC,150,150,N012_TOL,199.53577047526966,-0.23076185146645906
+ji2025_chili,fewshot,draw2,real_R2,pc,sq,N001_TOL,150,150,N022_FU1,331.8528110487361,0.7506573155027355
+ji2025_chili,fewshot,draw2,real_R2,pc,sq,N001_FU1,150,150,N138_TOL,274.7679830740008,0.3272489315581281
+ji2025_chili,fewshot,draw2,real_R2,pc,sq,N002_TOL,150,150,N043_FU1,297.78431380525103,0.49796517517309274
+ji2025_chili,fewshot,draw2,real_R2,pc,sq,N002_FU1,150,150,N002_TOL,303.8290242239171,0.5427998739990796
+ji2025_chili,fewshot,draw2,real_R2,pc,sq,N012_TOL,150,150,N012_FU1,257.37337928805994,0.19823004265788294
+ji2025_chili,fewshot,draw2,real_R2,pc,sq,N012_FU1,150,150,N129_AC,254.3913055138839,0.17611146785747733
+ji2025_chili,fewshot,draw2,real_R2,pc,sq,N022_TOL,150,150,N002_TOL,234.43713956688404,0.02810784839626079
+ji2025_chili,fewshot,draw2,real_R2,pc,sq,N022_FU1,150,150,N150_BC,266.0532493264371,0.2626101919232014
+ji2025_chili,fewshot,draw2,real_R2,pc,sq,N043_TOL,150,150,N128_BC,282.3259563118281,0.38330777149965095
+ji2025_chili,fewshot,draw2,real_R2,pc,sq,N043_FU1,150,150,N128_AC,274.6765990902682,0.3265711201983782
+ji2025_chili,fewshot,draw2,real_R2,pc,l2,N064_TOL,150,150,N012_TOL,18.349802506204554,0.9069280147501407
+ji2025_chili,fewshot,draw2,real_R2,pc,l2,N064_FU1,150,150,N002_FU1,17.80406137491041,0.7629184641813652
+ji2025_chili,fewshot,draw2,real_R2,pc,l2,N038_BC,150,150,N055_AC,15.258873343395926,0.09129713400554848
+ji2025_chili,fewshot,draw2,real_R2,pc,l2,N038_AC,150,150,N064_FU1,15.887696202373773,0.25723019661717733
+ji2025_chili,fewshot,draw2,real_R2,pc,l2,N055_AC,150,150,N012_FU1,15.516691291558045,0.15932984166558234
+ji2025_chili,fewshot,draw2,real_R2,pc,l2,N136_TOL,150,150,N129_BC,13.849343119585276,-0.2806481023059001
+ji2025_chili,fewshot,draw2,real_R2,pc,l2,N136_FU1,150,150,N138_TOL,13.067263738411981,-0.4870223221210614
+ji2025_chili,fewshot,draw2,real_R2,pc,l2,N138_TOL,150,150,N002_FU1,15.649919185594301,0.19448586719345265
+ji2025_chili,fewshot,draw2,real_R2,pc,l2,N138_FU1,150,150,N150_BC,14.532707184242009,-0.10032276821810478
+ji2025_chili,fewshot,draw2,real_R2,pc,l2,N128_BC,150,150,N064_FU1,15.727444883288936,0.21494326034624697
+ji2025_chili,fewshot,draw2,real_R2,pc,l2,N128_AC,150,150,N138_FU1,15.430799445284508,0.13666479871739448
+ji2025_chili,fewshot,draw2,real_R2,pc,l2,N129_BC,150,150,N002_TOL,15.17303236714566,0.06864551458138805
+ji2025_chili,fewshot,draw2,real_R2,pc,l2,N129_AC,150,150,N002_FU1,16.227512430593762,0.34690051738975847
+ji2025_chili,fewshot,draw2,real_R2,pc,l2,N150_BC,150,150,N022_FU1,12.789857085120063,-0.5602240750668649
+ji2025_chili,fewshot,draw2,real_R2,pc,l2,N158_AC,150,150,N038_BC,16.084355543472352,0.30912444043127163
+ji2025_chili,fewshot,draw2,real_R2,pc,l2,N159_BC,150,150,N012_TOL,13.749557774469935,-0.30697934596593734
+ji2025_chili,fewshot,draw2,real_R2,pc,l2,N001_TOL,150,150,N022_FU1,18.049608118431067,0.827713060282602
+ji2025_chili,fewshot,draw2,real_R2,pc,l2,N001_FU1,150,150,N138_TOL,16.266813727228808,0.35727129895749876
+ji2025_chili,fewshot,draw2,real_R2,pc,l2,N002_TOL,150,150,N043_FU1,16.954099154987258,0.5386313978916897
+ji2025_chili,fewshot,draw2,real_R2,pc,l2,N002_FU1,150,150,N002_TOL,17.0862309467629,0.5734981851985848
+ji2025_chili,fewshot,draw2,real_R2,pc,l2,N012_TOL,150,150,N012_FU1,15.854220438170284,0.2483966499382622
+ji2025_chili,fewshot,draw2,real_R2,pc,l2,N012_FU1,150,150,N129_AC,15.614436544213333,0.18512274804179735
+ji2025_chili,fewshot,draw2,real_R2,pc,l2,N022_TOL,150,150,N002_TOL,15.071212677682828,0.041777450442949976
+ji2025_chili,fewshot,draw2,real_R2,pc,l2,N022_FU1,150,150,N150_BC,15.983433936183859,0.2824933611981013
+ji2025_chili,fewshot,draw2,real_R2,pc,l2,N043_TOL,150,150,N128_BC,16.500086457598663,0.4188270423936807
+ji2025_chili,fewshot,draw2,real_R2,pc,l2,N043_FU1,150,150,N128_AC,16.192297050346596,0.33760792280287627
+ji2025_chili,fewshot,draw2,real_R2,all,sq,N064_TOL,1249,1249,N136_TOL,251.33425674876085,0.9435824510979465
+ji2025_chili,fewshot,draw2,real_R2,all,sq,N064_FU1,2329,2330,N043_FU1,215.3125980528134,0.48766807253041133
+ji2025_chili,fewshot,draw2,real_R2,all,sq,N038_BC,1400,1401,N150_BC,174.04065560622206,-0.034697434056593215
+ji2025_chili,fewshot,draw2,real_R2,all,sq,N038_AC,1988,1988,N129_BC,192.16904214611816,0.19474763824094193
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paper-releases/pbisc-diffusion/updates/20261001T200638Z-extra-realism-metrics/diffusion/dataset/server_1/model8/plans/paired_finetune_intradataset_20260927/scores_extra/ji2025_chili/fewshot_n5/draw2/manifest.json

@@ -0,0 +1,101 @@
+{
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+ "design": "fewshot",
+ "unit": "draw2",
+ "written_utc": "2026-10-01T15:38:48.158176+00:00",
+ "command": [
+  "tools/extra_metrics.py",
+  "--design",
+  "fewshot",
+  "--dataset",
+  "ji2025_chili",
+  "--draws",
+  "0,1,2,3,4",
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+  "6",
+  "--fetch-dir",
+  "/tmp/claude-1000/-home-sj-server-1/c8102cb0-e04f-4e04-adda-0728604e4435/scratchpad/fetch"
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+  "N129_AC",
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+ "n_samples": 26,
+ "calls": {
+  "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ji2025_chili/fewshot_n5/draw2": {
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+   0.5,
+   1.0,
+   2.0
+  ],
+  "bw_max_cells": 4000,
+  "en_pcs": 100,
+  "en_lb_max_queries_all_cells": 20000,
+  "en_all_cells": true
+ },
+ "n_representative_rows": 7,
+ "fetched_from_server2": [],
+ "code_sha256": {
+  "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/tools/extra_metrics.py": "4e69c029476c108d843265cbc4a9098eab9c7998cb74ae715ce8251287457fef",
+  "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/tools/ft_common.py": "4a6366b0f22208cd58714fc0261b8840c643b9d4569704d560cfd93534cbc747",
+  "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/tools/score_ft.py": "ec5f40b4cea6d5062d0138f3b934abb6465e34cbfeac869c8a0906924c033aec",
+  "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/umap/cell_immicro_5arm/tools/stage_b_embed.py": "d056cfdf38fb0e5f478756f370174e993b75d0c973c48e02e21749175a4ca2da"
+ },
+ "seconds": 333.2,
+ "max_abs_diff_k10_pooled": 0.0,
+ "extra_metrics_py_sha256_ran": "b65e022452d8fccbd2e9b349265d54d3833faf1876dbfd753cf0279678d02671",
+ "code_sha256_note": "code_sha256 was hashed when the unit finished; extra_metrics_py_sha256_ran is the file the process loaded at start (scores_extra/_code/). v1-v3 differ only in the collector and the per-unit lock; metric code identical (scores_extra/_code/README.md)"
+}

paper-releases/pbisc-diffusion/updates/20261001T200638Z-extra-realism-metrics/diffusion/dataset/server_1/model8/plans/paired_finetune_intradataset_20260927/scores_extra/ji2025_chili/fewshot_n5/draw2/metrics.csv

@@ -0,0 +1,25 @@
+dataset,design,unit,label,set,real_side,mode,n_real,n_gen,precision_k3,coverage_k3,density_k3,expected_coverage_identical_k3,precision_k5,coverage_k5,density_k5,expected_coverage_identical_k5,precision_k10,coverage_k10,density_k10,expected_coverage_identical_k10,c2st_knn_auc,c2st_knn_auc_sd,c2st_rf_auc,c2st_rf_auc_sd,nn1_acc,nn1_acc_real,nn1_acc_gen,mmd2_bw0.5,mmd2_bw1,mmd2_bw2,mmd2_sum,mmd_bandwidth_m,seconds
+ji2025_chili,fewshot,draw2,Real vs real control (held-out real cells),real_R2,R1,raw,3900,3900,0.9725641025641025,0.9815384615384616,2.9135042735042735,0.8750961600082804,0.9884615384615385,0.9974358974358974,2.7424615384615385,0.9688100807346945,0.9969230769230769,1.0,2.5067692307692306,0.9990303085158746,0.5585738001314924,0.015892126678736847,0.8072700525969758,0.012186668255658948,0.5238461538461539,0.23358974358974358,0.8141025641025641,0.0013588647941811804,0.00017528430623992008,-1.1801948502698778e-05,0.0015223471519184018,29.90902917595094,8.4
+ji2025_chili,fewshot,draw2,Real vs real control (held-out real cells),real_R2,R1,dm,3900,3900,0.9712820512820513,0.9802564102564103,2.830854700854701,0.8750961600082804,0.9892307692307692,0.9984615384615385,2.6937435897435895,0.9688100807346945,0.9971794871794872,1.0,2.4707948717948716,0.9990303085158746,0.5596484220907297,0.016223757613330846,0.8021323142669295,0.011047744107874175,0.5252564102564102,0.24333333333333335,0.8071794871794872,0.0012672814977825464,0.00015027457501592956,-1.4935329835097377e-05,0.0014026207429633786,29.90902917595094,8.9
+ji2025_chili,fewshot,draw2,Real vs real control (out-of-sample: R2 vs R3),real_R3,R2,raw,3900,3900,,,,,,,,,,,,,0.4975008218277449,0.013755172597515101,0.4810129848783696,0.007103968316020763,0.48935897435897435,0.4876923076923077,0.491025641025641,-6.97094271194243e-05,-5.000629212026375e-05,-1.5973825621573567e-05,-0.0001356895448612616,29.90902917595094,7.6
+ji2025_chili,fewshot,draw2,Real vs real control (out-of-sample: R2 vs R3),real_R3,R2,dm,3900,3900,,,,,,,,,,,,,0.4917087442472058,0.007666366640106933,0.4897601906640368,0.01199391559038966,0.4878205128205128,0.4869230769230769,0.4887179487179487,-8.525850903473575e-05,-5.582422553040978e-05,-1.829816335607859e-05,-0.00015938089792122412,29.90902917595094,7.6
+ji2025_chili,fewshot,draw2,"Zero-shot, real bulk",zs_raw,R1,raw,3900,3900,0.4194871794871795,0.03,0.3000854700854701,0.8750961600082804,0.627948717948718,0.04,0.45153846153846156,0.9688100807346945,0.8151282051282052,0.05897435897435897,0.41220512820512817,0.9990303085158746,0.9966050295857988,0.0017615422892461971,0.9995731426692964,0.0001255442419071493,0.9903846153846154,0.9825641025641025,0.9982051282051282,0.3111513937535396,0.2730819823777113,0.09862719910038509,0.682860575231636,29.90902917595094,5.5
+ji2025_chili,fewshot,draw2,"Zero-shot, real bulk",zs_raw,R1,dm,3900,3900,0.20282051282051283,0.08615384615384615,0.12452991452991453,0.8750961600082804,0.28692307692307695,0.1176923076923077,0.13071794871794873,0.9688100807346945,0.4323076923076923,0.19128205128205128,0.14084615384615384,0.9990303085158746,0.9949357330703485,0.0015880543086343507,0.9965890861275476,0.0010554089997505186,0.9735897435897436,0.9628205128205128,0.9843589743589743,0.19154456406201187,0.13683389332151052,0.046353369595864224,0.3747318269793866,29.90902917595094,5.7
+ji2025_chili,fewshot,draw2,"Zero-shot, real bulk",zs_raw,R2,raw,3900,3900,,,,,,,,,,,,,0.9991681459566075,0.0002999870527367451,0.9993952991452992,0.0007591725595276371,0.9955128205128205,0.9930769230769231,0.997948717948718,0.32601854568228467,0.27458005956278475,0.0979865402122928,0.6985851454573622,29.90902917595094,5.3
+ji2025_chili,fewshot,draw2,"Zero-shot, real bulk",zs_raw,R2,dm,3900,3900,,,,,,,,,,,,,0.9963256081525312,0.0006240838902927344,0.9967429322813939,0.0005755492111816482,0.9774358974358974,0.9730769230769231,0.9817948717948718,0.19596042361081706,0.13778324835413014,0.04644101859603489,0.3801846905609821,29.90902917595094,5.2
+ji2025_chili,fewshot,draw2,Zero-shot + calibration,zs_cal,R1,raw,3900,3900,0.4382051282051282,0.0541025641025641,0.29025641025641025,0.8750961600082804,0.602051282051282,0.07205128205128206,0.3535897435897436,0.9688100807346945,0.806923076923077,0.10846153846153846,0.36225641025641026,0.9990303085158746,0.9950700197238659,0.0016078989365524822,0.9993514135437213,0.00017346348406747735,0.9855128205128205,0.9735897435897436,0.9974358974358974,0.20805934239016222,0.1377939577719196,0.04516349783629203,0.39101679799837386,29.90902917595094,5.9
+ji2025_chili,fewshot,draw2,Zero-shot + calibration,zs_cal,R1,dm,3900,3900,0.32205128205128203,0.16564102564102565,0.19760683760683762,0.8750961600082804,0.438974358974359,0.23743589743589744,0.2106153846153846,0.9688100807346945,0.632051282051282,0.3630769230769231,0.23607692307692307,0.9990303085158746,0.9913090072320841,0.001652810364922855,0.9929868507560815,0.001185342387180534,0.9525641025641025,0.926923076923077,0.9782051282051282,0.0783945807029266,0.03895471283652663,0.011781282976553564,0.1291305765160068,29.90902917595094,5.3
+ji2025_chili,fewshot,draw2,Zero-shot + calibration,zs_cal,R2,raw,3900,3900,,,,,,,,,,,,,0.9980243261012491,0.00032100816844653365,0.9991538461538461,0.00043143749356518027,0.9915384615384616,0.987948717948718,0.9951282051282051,0.2128926239100815,0.13675965618386532,0.044497152386339556,0.3941494324802864,29.90902917595094,4.9
+ji2025_chili,fewshot,draw2,Zero-shot + calibration,zs_cal,R2,dm,3900,3900,,,,,,,,,,,,,0.992947567389875,0.0008590100399622012,0.9932475345167653,0.0017257356893220141,0.9601282051282052,0.95,0.9702564102564103,0.07910288556096357,0.03899554326134025,0.011772999870178324,0.12987142869248214,29.90902917595094,5.1
+ji2025_chili,fewshot,draw2,"LoRA, 5 donors",lora5,R1,raw,3900,3900,0.7805128205128206,0.3182051282051282,0.8913675213675214,0.8750961600082804,0.8797435897435898,0.4041025641025641,0.8560512820512821,0.9688100807346945,0.9653846153846154,0.5297435897435897,0.8515384615384616,0.9990303085158746,0.9659822485207101,0.003216133518981912,0.978266765285996,0.005388365862617762,0.901025641025641,0.833076923076923,0.968974358974359,0.12183846303423151,0.06818021117752293,0.020673003300696324,0.21069167751245077,29.90902917595094,6.8
+ji2025_chili,fewshot,draw2,"LoRA, 5 donors",lora5,R1,dm,3900,3900,0.7515384615384615,0.6143589743589744,0.9192307692307692,0.8750961600082804,0.86,0.742051282051282,0.9381025641025641,0.9688100807346945,0.9507692307692308,0.8674358974358974,0.9523076923076923,0.9990303085158746,0.8999886587771204,0.004122233630130825,0.9188456607495068,0.00744883268781227,0.7842307692307692,0.683076923076923,0.8853846153846154,0.03238648649211451,0.01662420559531319,0.0051677411293520326,0.05417843321677973,29.90902917595094,6.1
+ji2025_chili,fewshot,draw2,"LoRA, 5 donors",lora5,R2,raw,3900,3900,,,,,,,,,,,,,0.9747031558185404,0.004786153524462266,0.9722782708744246,0.004402987276509964,0.9133333333333333,0.9164102564102564,0.9102564102564102,0.1174577592034235,0.0658442529125971,0.020136711699261234,0.20343872381528183,29.90902917595094,5.2
+ji2025_chili,fewshot,draw2,"LoRA, 5 donors",lora5,R2,dm,3900,3900,,,,,,,,,,,,,0.9008966140696911,0.005560193542311114,0.9181252465483235,0.006753453673692912,0.7851282051282051,0.7630769230769231,0.8071794871794872,0.030900571680485323,0.01649124644321942,0.00522570477685691,0.05261752290056165,29.90902917595094,5.6
+ji2025_chili,fewshot,draw2,"Zero-shot, sc pseudobulk input (reference)",zs_pseudo,R1,raw,3900,3900,0.8817948717948718,0.4782051282051282,1.9817948717948717,0.8750961600082804,0.9464102564102564,0.5738461538461539,2.008769230769231,0.9688100807346945,0.9828205128205129,0.696923076923077,2.0046923076923076,0.9990303085158746,0.9420498027613412,0.0068785123390435006,0.9831005917159764,0.0015980333676500211,0.857948717948718,0.7266666666666667,0.9892307692307692,0.057936926736955385,0.02785645766350986,0.008261484598909963,0.09405486899937521,29.90902917595094,6.7
+ji2025_chili,fewshot,draw2,"Zero-shot, sc pseudobulk input (reference)",zs_pseudo,R1,dm,3900,3900,0.8702564102564102,0.5089743589743589,1.8288888888888888,0.8750961600082804,0.9307692307692308,0.6174358974358974,1.8447179487179486,0.9688100807346945,0.9751282051282051,0.7451282051282051,1.8667179487179488,0.9990303085158746,0.9389949046679815,0.0049981243977729435,0.9803727810650887,0.0010899945096142008,0.8488461538461538,0.7164102564102565,0.9812820512820513,0.048656078663615654,0.02384240597700349,0.0073074185420003435,0.07980590318261949,29.90902917595094,6.5
+ji2025_chili,fewshot,draw2,"Zero-shot, sc pseudobulk input (reference)",zs_pseudo,R2,raw,3900,3900,,,,,,,,,,,,,0.9629488823142671,0.0018197039945397379,0.9803537146614069,0.0023727528793494467,0.8969230769230769,0.8376923076923077,0.9561538461538461,0.052483438266602844,0.02635186997701111,0.00809666840530654,0.0869319766489205,29.90902917595094,6.0
+ji2025_chili,fewshot,draw2,"Zero-shot, sc pseudobulk input (reference)",zs_pseudo,R2,dm,3900,3900,,,,,,,,,,,,,0.9540675542406312,0.004365266375672121,0.9780325443786984,0.003058177349922011,0.8851282051282051,0.8158974358974359,0.9543589743589743,0.04503911746901812,0.02300937064562003,0.007251929514695554,0.0753004176293337,29.90902917595094,6.1
+ji2025_chili,fewshot,draw2,"scSemiProfiler, 5 donors",scsemi5,R1,raw,3900,3900,0.5225641025641026,0.05820512820512821,0.3172649572649573,0.8750961600082804,0.6625641025641026,0.07743589743589743,0.3189230769230769,0.9688100807346945,0.8292307692307692,0.1105128205128205,0.34207692307692306,0.9990303085158746,0.9931152202498357,0.0031136995146688103,0.9995207100591716,0.0004307841211224592,0.9862820512820513,0.9730769230769231,0.9994871794871795,0.2589575221109485,0.15719333142015834,0.051145970937299445,0.4672968244684063,29.90902917595094,5.9
+ji2025_chili,fewshot,draw2,"scSemiProfiler, 5 donors",scsemi5,R1,dm,3900,3900,0.20666666666666667,0.04923076923076923,0.12341880341880344,0.8750961600082804,0.2787179487179487,0.07333333333333333,0.13056410256410256,0.9688100807346945,0.4269230769230769,0.12205128205128205,0.14064102564102565,0.9990303085158746,0.9969520052596975,0.0011859666883824896,0.9992453977646285,0.0005816004751754738,0.9893589743589744,0.9792307692307692,0.9994871794871795,0.2160476291253185,0.12052260445566843,0.03821913358001905,0.37478936716100597,29.90902917595094,5.4
+ji2025_chili,fewshot,draw2,"scSemiProfiler, 5 donors",scsemi5,R2,raw,3900,3900,,,,,,,,,,,,,0.9960841551610784,0.0024164215312391674,0.9992746548323472,0.000267331988258103,0.9938461538461538,0.9882051282051282,0.9994871794871795,0.26140856045196537,0.1563223341298654,0.05069242647893013,0.4684233210607609,29.90902917595094,5.3
+ji2025_chili,fewshot,draw2,"scSemiProfiler, 5 donors",scsemi5,R2,dm,3900,3900,,,,,,,,,,,,,0.9964238987508217,0.002182737637864886,0.9991449704142011,0.0006931669076268888,0.9915384615384616,0.9841025641025641,0.9989743589743589,0.21863206136585311,0.12159029673843147,0.03862870247994166,0.37885106058422624,29.90902917595094,5.0