Archive 2 checkpoints (1-2)

paper-releases/pbisc-diffusion/updates/20260929T062828Z-manuscript-relocation/diffusion/metadata/NOTE.md

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+# PBISC-diffusion update 20260929T062828Z-manuscript-relocation
+
+Relocation of the PBISC-Diffusion manuscript at the user's request (2026-09-29): the Git working tree of junidude/PBISC-diffusion-overleaf moved by same-filesystem rename from /home/sj_server_1/PBISC/immun-pbmc-fm/bulk2sc-paper/nature-communications-overleaf to /home/sj_server_1/PBISC/paper-release-20260928/manuscript (691 files incl. .git, byte-identical; inventory sha256 ad556080...), and its superseded drafts from bulk2sc-paper/archived-analyses to paper-release-20260928/archived-analyses (79 files, byte-identical; not an archive payload root). This delta carries the scope/tooling change (SCOPE.json core_roots.manuscript and update.py CORE_ROOTS, POLICY.md), the manuscript files edited for the new location (README working-copy path, location-independent packaging script, one absolute reference to the BIBM draft that stayed behind, AGENTS.md policy path) with the relocation record, and the two Model 8 scripts that write into the manuscript. Unchanged manuscript files keep their baseline archive copies (same bytes, old source path).
+
+Payload states are recorded as supplied. Inference locations are pointers, not archived generated outputs.

paper-releases/pbisc-diffusion/updates/20260929T062828Z-manuscript-relocation/diffusion/metadata/inference_locations.json

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+{
+  "locations": [],
+  "project_id": "pbisc-diffusion",
+  "update_id": "20260929T062828Z-manuscript-relocation"
+}