Hugging Face's logo

Datasets:
junidude14
/
PBISC-data

Modalities:
Tabular
Text
Formats:
parquet
Languages:
English
Size:
< 1K
Tags:
single-cell-rna-seq
bulk-rna-seq
diffusion
Libraries:
Datasets
pandas
Polars
Dataset card Data Studio Files
xet
 Community
1
junidude14 commited on
Commit
328e126
·
verified ·
1 Parent(s): 946f8e1

Archive 4 checkpoints (1-4)

Browse files
Files changed (4) hide show
  1. paper-releases/pbisc-diffusion/updates/20261013T034842Z-expanded-131-slide-master/diffusion/dataset/server_1/model8/presentations/2026-09-30--paper-summary--r00/data/expanded_master_20261013/disease/strict_snapshot_tables/scores/ye2026_sepsis/disease/draw2/statistics/donor_deg/donor_deg_summary.csv +26 -0
  2. paper-releases/pbisc-diffusion/updates/20261013T034842Z-expanded-131-slide-master/diffusion/dataset/server_1/model8/presentations/2026-09-30--paper-summary--r00/data/expanded_master_20261013/disease/strict_snapshot_tables/scores/ye2026_sepsis/disease/draw3/extras/ye2026_sepsis/strict/en.csv +25 -0
  3. paper-releases/pbisc-diffusion/updates/20261013T034842Z-expanded-131-slide-master/diffusion/dataset/server_1/model8/presentations/2026-09-30--paper-summary--r00/data/expanded_master_20261013/disease/strict_snapshot_tables/scores/ye2026_sepsis/disease/draw3/extras/ye2026_sepsis/strict/metrics.csv +25 -0
  4. paper-releases/pbisc-diffusion/updates/20261013T034842Z-expanded-131-slide-master/diffusion/dataset/server_1/model8/presentations/2026-09-30--paper-summary--r00/data/expanded_master_20261013/disease/strict_snapshot_tables/scores/ye2026_sepsis/disease/draw3/statistics/donor_deg/donor_deg_summary.csv +26 -0
paper-releases/pbisc-diffusion/updates/20261013T034842Z-expanded-131-slide-master/diffusion/dataset/server_1/model8/presentations/2026-09-30--paper-summary--r00/data/expanded_master_20261013/disease/strict_snapshot_tables/scores/ye2026_sepsis/disease/draw2/statistics/donor_deg/donor_deg_summary.csv ADDED
@@ -0,0 +1,26 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ arm,celltype,status,observed_status,generated_status,n_case_donors_observed,n_control_donors_observed,n_case_donors_generated,n_control_donors_generated,method_observed,method_generated,reason_observed,reason_generated,reason_fit,reason_population,top50_overlap_count,observed_top50_size,generated_top50_size
2
+ lora,T cell,ok,ok,ok,57,20,57,20,edgeR_TMM_limma_voom,edgeR_TMM_limma_voom,,,,,10,50,50
3
+ lora,B cell,ok,ok,ok,57,20,57,20,edgeR_TMM_limma_voom,edgeR_TMM_limma_voom,,,,,6,50,50
4
+ lora,Monocyte,ok,ok,ok,57,20,55,20,edgeR_TMM_limma_voom,edgeR_TMM_limma_voom,,,,,0,50,26
5
+ lora,NK cell,ok,ok,ok,57,20,57,20,edgeR_TMM_limma_voom,edgeR_TMM_limma_voom,,,,,5,50,50
6
+ lora,DC,ok,ok,ok,53,20,35,19,edgeR_TMM_limma_voom,edgeR_TMM_limma_voom,,,,,0,50,0
7
+ pairedcal,T cell,ok,ok,ok,57,20,57,20,edgeR_TMM_limma_voom,edgeR_TMM_limma_voom,,,,,1,50,50
8
+ pairedcal,B cell,ok,ok,ok,57,20,57,20,edgeR_TMM_limma_voom,edgeR_TMM_limma_voom,,,,,1,50,50
9
+ pairedcal,Monocyte,ok,ok,ok,57,20,57,20,edgeR_TMM_limma_voom,edgeR_TMM_limma_voom,,,,,6,50,50
10
+ pairedcal,NK cell,ok,ok,ok,57,20,57,20,edgeR_TMM_limma_voom,edgeR_TMM_limma_voom,,,,,1,50,18
11
+ pairedcal,DC,ok,ok,ok,53,20,56,20,edgeR_TMM_limma_voom,edgeR_TMM_limma_voom,,,,,0,50,0
12
+ scsemi,T cell,ok,ok,ok,57,20,57,20,edgeR_TMM_limma_voom,edgeR_TMM_limma_voom,,,,,0,50,13
13
+ scsemi,B cell,ok,ok,ok,57,20,56,20,edgeR_TMM_limma_voom,edgeR_TMM_limma_voom,,,,,0,50,50
14
+ scsemi,Monocyte,ok,ok,ok,57,20,55,20,edgeR_TMM_limma_voom,edgeR_TMM_limma_voom,,,,,0,50,37
15
+ scsemi,NK cell,ok,ok,ok,57,20,47,17,edgeR_TMM_limma_voom,edgeR_TMM_limma_voom,,,,,1,50,50
16
+ scsemi,DC,ok,ok,ok,53,20,55,18,edgeR_TMM_limma_voom,edgeR_TMM_limma_voom,,,,,3,50,50
17
+ raw,T cell,ok,ok,ok,57,20,57,20,edgeR_TMM_limma_voom,edgeR_TMM_limma_voom,,,,,1,50,50
18
+ raw,B cell,ok,ok,ok,57,20,57,20,edgeR_TMM_limma_voom,edgeR_TMM_limma_voom,,,,,0,50,50
19
+ raw,Monocyte,ok,ok,ok,57,20,57,20,edgeR_TMM_limma_voom,edgeR_TMM_limma_voom,,,,,5,50,50
20
+ raw,NK cell,ok,ok,ok,57,20,57,20,edgeR_TMM_limma_voom,edgeR_TMM_limma_voom,,,,,2,50,50
21
+ raw,DC,ok,ok,ok,53,20,57,20,edgeR_TMM_limma_voom,edgeR_TMM_limma_voom,,,,,0,50,0
22
+ refcal,T cell,ok,ok,ok,57,20,57,20,edgeR_TMM_limma_voom,edgeR_TMM_limma_voom,,,,,2,50,50
23
+ refcal,B cell,ok,ok,ok,57,20,57,20,edgeR_TMM_limma_voom,edgeR_TMM_limma_voom,,,,,0,50,0
24
+ refcal,Monocyte,ok,ok,ok,57,20,57,20,edgeR_TMM_limma_voom,edgeR_TMM_limma_voom,,,,,5,50,50
25
+ refcal,NK cell,ok,ok,ok,57,20,57,20,edgeR_TMM_limma_voom,edgeR_TMM_limma_voom,,,,,3,50,50
26
+ refcal,DC,ok,ok,ok,53,20,57,20,edgeR_TMM_limma_voom,edgeR_TMM_limma_voom,,,,,0,50,33
paper-releases/pbisc-diffusion/updates/20261013T034842Z-expanded-131-slide-master/diffusion/dataset/server_1/model8/presentations/2026-09-30--paper-summary--r00/data/expanded_master_20261013/disease/strict_snapshot_tables/scores/ye2026_sepsis/disease/draw3/extras/ye2026_sepsis/strict/en.csv ADDED
@@ -0,0 +1,25 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ dataset,design,unit,set,cellset,distance,n_samples,n_cells_real,n_cells_gen,n_pcs,lb,ub,dif_mean,en,lb_exact,lb_queries,n_representative_rows,en_reps_at_lb,seconds
2
+ ye2026_sepsis,scored,strict,real_R2,pc,sq,77,11550,11550,100,154.76819166132353,301.9721718570832,186.00509730562842,0.2122015016357873,True,"[11550, 11550]",,,10.6
3
+ ye2026_sepsis,scored,strict,real_R2,pc,l2,77,11550,11550,100,12.164180583739396,16.70872435458409,13.19461463903322,0.22674092433755963,True,"[11550, 11550]",,,10.6
4
+ ye2026_sepsis,scored,strict,real_R2,all,sq,77,274918,274959,100,123.10334777778893,215.87950877164508,132.7042079886251,0.10348412898300406,False,"[20000, 20000]",,,71.7
5
+ ye2026_sepsis,scored,strict,real_R2,all,l2,77,274918,274959,100,10.874816907720597,14.338877426710134,11.25391413027028,0.10943724004575578,False,"[20000, 20000]",,,71.7
6
+ ye2026_sepsis,scored,strict,lora,pc,sq,77,11550,11550,100,194.65865743434435,288.6498561943339,329.01292972716203,1.4294346073391078,True,"[11550, 11550]",,,9.4
7
+ ye2026_sepsis,scored,strict,lora,pc,l2,77,11550,11550,100,13.594774565144691,16.34256581412931,17.63361163814463,1.4698485827452856,True,"[11550, 11550]",,,9.4
8
+ ye2026_sepsis,scored,strict,lora,all,sq,77,549877,115500,100,133.65348462367018,204.8320133400705,239.92488704378704,1.4930261180803357,False,"[20000, 20000]",,,75.6
9
+ ye2026_sepsis,scored,strict,lora,all,l2,77,549877,115500,100,11.293518735474283,13.989550302086636,15.169384690268478,1.437618907283174,False,"[20000, 20000]",,,75.6
10
+ ye2026_sepsis,scored,strict,pairedcal,pc,sq,77,11550,11550,100,171.92243438300915,289.72455041625045,343.1675452979035,1.453667528914103,True,"[11550, 11550]",,,10.6
11
+ ye2026_sepsis,scored,strict,pairedcal,pc,l2,77,11550,11550,100,12.809169633369146,16.37770642163519,18.124690512531174,1.48955193530311,True,"[11550, 11550]",,,10.6
12
+ ye2026_sepsis,scored,strict,pairedcal,all,sq,77,549877,115500,100,126.61509941439493,204.76334916946402,274.01114919036024,1.8861081372638735,False,"[20000, 20000]",,,80.4
13
+ ye2026_sepsis,scored,strict,pairedcal,all,l2,77,549877,115500,100,11.020922800411148,13.98830036946236,16.26599647374184,1.7675787968592582,False,"[20000, 20000]",,,80.4
14
+ ye2026_sepsis,scored,strict,scsemi,pc,sq,77,11550,11550,100,128.0870817622692,287.446598429934,486.6641731594286,2.250114074736757,True,"[11550, 11550]",,,9.2
15
+ ye2026_sepsis,scored,strict,scsemi,pc,l2,77,11550,11550,100,10.93192069643602,16.227699564155206,21.646164955796,2.0231668517485604,True,"[11550, 11550]",,,9.2
16
+ ye2026_sepsis,scored,strict,scsemi,all,sq,77,549877,115500,100,111.6456061507543,202.1675659742024,439.0482055343118,3.6168306565845,False,"[20000, 20000]",,,76.3
17
+ ye2026_sepsis,scored,strict,scsemi,all,l2,77,549877,115500,100,10.264380027947576,13.874901572258015,20.53540561301911,2.8447484550416,False,"[20000, 20000]",,,76.3
18
+ ye2026_sepsis,scored,strict,raw,pc,sq,77,11550,11550,100,240.5927171730283,260.5892285739233,635.7945226668966,19.763537627677362,True,"[11550, 11550]",,,10.6
19
+ ye2026_sepsis,scored,strict,raw,pc,l2,77,11550,11550,100,14.824141917812172,15.46386371780353,24.66118998816116,15.377071831039478,True,"[11550, 11550]",,,10.6
20
+ ye2026_sepsis,scored,strict,raw,all,sq,77,549877,115500,100,140.28513041009617,200.4838926609554,444.0606130500238,5.046208115941649,False,"[20000, 20000]",,,79.8
21
+ ye2026_sepsis,scored,strict,raw,all,l2,77,549877,115500,100,11.495880658487845,13.831295731272416,20.81526173026324,3.9904602742259763,False,"[20000, 20000]",,,79.8
22
+ ye2026_sepsis,scored,strict,refcal,pc,sq,77,11550,11550,100,176.11121601562928,286.8053619519153,393.10469002575326,1.9602976487575263,True,"[11550, 11550]",,,9.2
23
+ ye2026_sepsis,scored,strict,refcal,pc,l2,77,11550,11550,100,12.975866579695273,16.277976357900737,19.454935099345292,1.9620996740971697,True,"[11550, 11550]",,,9.2
24
+ ye2026_sepsis,scored,strict,refcal,all,sq,77,549877,115500,100,127.06194706472681,204.18896860630446,318.9203461656605,2.487563959636463,False,"[20000, 20000]",,,76.0
25
+ ye2026_sepsis,scored,strict,refcal,all,l2,77,549877,115500,100,11.041066823993432,13.963598992859836,17.569286636439546,2.2337546467378284,False,"[20000, 20000]",,,76.0
paper-releases/pbisc-diffusion/updates/20261013T034842Z-expanded-131-slide-master/diffusion/dataset/server_1/model8/presentations/2026-09-30--paper-summary--r00/data/expanded_master_20261013/disease/strict_snapshot_tables/scores/ye2026_sepsis/disease/draw3/extras/ye2026_sepsis/strict/metrics.csv ADDED
@@ -0,0 +1,25 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ dataset,design,unit,label,set,real_side,mode,n_real,n_gen,precision_k3,coverage_k3,density_k3,expected_coverage_identical_k3,precision_k5,coverage_k5,density_k5,expected_coverage_identical_k5,precision_k10,coverage_k10,density_k10,expected_coverage_identical_k10,c2st_knn_auc,c2st_knn_auc_sd,c2st_rf_auc,c2st_rf_auc_sd,nn1_acc,nn1_acc_real,nn1_acc_gen,mmd2_bw0.5,mmd2_bw1,mmd2_bw2,mmd2_sum,mmd_bandwidth_m,seconds
2
+ ye2026_sepsis,scored,strict,Real vs real control (held-out real cells),real_R2,R1,raw,11550,11550,0.8742857142857143,0.9228571428571428,1.351053391053391,0.8750324682351671,0.9368831168831169,0.9853679653679653,1.336987012987013,0.9687702904505108,0.9804329004329004,0.9997402597402597,1.308987012987013,0.9990257609379009,0.5157619047619048,0.004084612770004213,0.5973744307640411,0.0071562714304603215,0.5092640692640693,0.42432900432900433,0.5941991341991342,0.0001425433882933369,3.3377348008345464e-05,1.0143937647644208e-06,0.0001769351300664468,27.639461251790532,39.6
3
+ ye2026_sepsis,scored,strict,Real vs real control (held-out real cells),real_R2,R1,dm,11550,11550,0.8741125541125541,0.9219047619047619,1.3391053391053391,0.8750324682351671,0.9385281385281385,0.9861471861471861,1.3247792207792206,0.9687702904505108,0.9814718614718615,0.9999134199134199,1.3029004329004328,0.9990257609379009,0.5150919772867825,0.006345172694869324,0.5910114315698731,0.00975374116139872,0.5085714285714286,0.4240692640692641,0.5930735930735931,0.00013398718129670195,3.073112128371136e-05,-7.136561697151933e-08,0.0001646469369634418,27.639461251790532,39.3
4
+ ye2026_sepsis,scored,strict,Real vs real control (out-of-sample: R2 vs R3),real_R3,R2,raw,11550,11550,,,,,,,,,,,,,0.5011890894098686,0.008415752679841137,0.4893464702685482,0.0022806044895677686,0.504978354978355,0.4980952380952381,0.5118614718614719,-6.091097179250493e-05,-3.969434491724044e-05,-1.35842595234692e-05,-0.00011418957623321457,27.639461251790532,35.4
5
+ ye2026_sepsis,scored,strict,Real vs real control (out-of-sample: R2 vs R3),real_R3,R2,dm,11550,11550,,,,,,,,,,,,,0.500474260227507,0.008833363964834357,0.48582560296846006,0.00682950862577281,0.5037662337662338,0.4918614718614719,0.5156709956709957,-6.340832893209081e-05,-3.981527764551629e-05,-1.3246787526677295e-05,-0.00011647039410428439,27.639461251790532,35.9
6
+ ye2026_sepsis,scored,strict,,lora,R1,raw,11550,11550,0.6047619047619047,0.3742857142857143,0.5411544011544012,0.8750324682351671,0.7398268398268398,0.4922077922077922,0.5678961038961039,0.9687702904505108,0.8836363636363637,0.655064935064935,0.6063116883116882,0.9990257609379009,0.9414991473173291,0.0033477825095750797,0.9419944341372913,0.001982047180130911,0.8525108225108226,0.8255411255411256,0.8794805194805195,0.036516741193668045,0.021010278104555358,0.006352420982625118,0.06387944028084852,27.639461251790532,27.3
7
+ ye2026_sepsis,scored,strict,,lora,R1,dm,11550,11550,0.6405194805194805,0.536969696969697,0.7666666666666666,0.8750324682351671,0.7539393939393939,0.6671861471861472,0.7867359307359307,0.9687702904505108,0.8777489177489177,0.8219047619047619,0.8151948051948052,0.9990257609379009,0.8887933134686381,0.004810885200095037,0.9073443713573583,0.004685295198744712,0.7804329004329005,0.7208658008658009,0.84,0.02042798372913368,0.011383774196307872,0.003582840308188784,0.03539459823363034,27.639461251790532,27.5
8
+ ye2026_sepsis,scored,strict,,lora,R2,raw,11550,11550,,,,,,,,,,,,,0.9390440021738723,0.002473077920582556,0.9403488502839152,0.0020703185131030633,0.8380952380952381,0.852987012987013,0.8232034632034632,0.03471562178640014,0.0205793927422826,0.006396560433781895,0.061691574962464635,27.639461251790532,25.0
9
+ ye2026_sepsis,scored,strict,,lora,R2,dm,11550,11550,,,,,,,,,,,,,0.882414516219711,0.005757919170577365,0.9067668147148666,0.004344619477578541,0.7745887445887446,0.7452813852813853,0.8038961038961039,0.019436402910345763,0.0110819292964901,0.0035260648094275204,0.034044397016263384,27.639461251790532,25.3
10
+ ye2026_sepsis,scored,strict,,pairedcal,R1,raw,11550,11550,0.6007792207792207,0.22337662337662337,0.4673881673881674,0.8750324682351671,0.7550649350649351,0.3038095238095238,0.5045714285714286,0.9687702904505108,0.8903030303030303,0.43636363636363634,0.5367359307359307,0.9990257609379009,0.9818540132306366,0.0011324325004816145,0.9870176720826072,0.0008369797375356816,0.9322510822510822,0.8959307359307359,0.9685714285714285,0.06445982393791128,0.03506812334028253,0.010550194132474378,0.11007814141066818,27.639461251790532,27.5
11
+ ye2026_sepsis,scored,strict,,pairedcal,R1,dm,11550,11550,0.6668398268398268,0.4012121212121212,0.7366810966810967,0.8750324682351671,0.7931601731601732,0.5174891774891774,0.7755844155844156,0.9687702904505108,0.9148051948051948,0.6743722943722944,0.8358528138528138,0.9990257609379009,0.9592160379303236,0.0018996955759782998,0.9727190644852982,0.002970681480264047,0.8773160173160173,0.8066666666666666,0.947965367965368,0.04514524994568425,0.026233362431012486,0.008598787832690302,0.07997740020938704,27.639461251790532,27.7
12
+ ye2026_sepsis,scored,strict,,pairedcal,R2,raw,11550,11550,,,,,,,,,,,,,0.9833161484979666,0.0019676592460562904,0.988005228537696,0.0012576502149587742,0.937965367965368,0.9222510822510822,0.9536796536796537,0.06360352220948429,0.034856758534187016,0.010608662143417824,0.10906894288708913,27.639461251790532,25.4
13
+ ye2026_sepsis,scored,strict,,pairedcal,R2,dm,11550,11550,,,,,,,,,,,,,0.9617652405314743,0.0018255722335174759,0.9746204343996551,0.0037542893906914445,0.8847186147186147,0.8332467532467532,0.9361904761904762,0.04497639647569229,0.026173603025114733,0.008578559718335432,0.07972855921914246,27.639461251790532,26.0
14
+ ye2026_sepsis,scored,strict,,scsemi,R1,raw,11550,11550,0.35515151515151516,0.045281385281385284,0.182020202020202,0.8750324682351671,0.470995670995671,0.062164502164502165,0.17918614718614717,0.9687702904505108,0.6612121212121213,0.08753246753246753,0.19064935064935065,0.9990257609379009,0.9968158018028148,0.0011267996584126395,0.99951430820262,0.00011423449914154444,0.9895238095238095,0.9812987012987013,0.9977489177489177,0.19480385166821124,0.13402271426769574,0.045785439988009324,0.3746120059239163,27.639461251790532,27.1
15
+ ye2026_sepsis,scored,strict,,scsemi,R1,dm,11550,11550,0.2574025974025974,0.08095238095238096,0.13942279942279942,0.8750324682351671,0.3530735930735931,0.11688311688311688,0.14297835497835498,0.9687702904505108,0.49134199134199136,0.1794805194805195,0.1434891774891775,0.9990257609379009,0.9951577744045276,0.0009183311587117213,0.998848803433219,0.0002915055995145387,0.9804329004329004,0.9664935064935065,0.9943722943722944,0.12846210837263072,0.08041679053504969,0.02656417800272104,0.23544307691040145,27.639461251790532,27.8
16
+ ye2026_sepsis,scored,strict,,scsemi,R2,raw,11550,11550,,,,,,,,,,,,,0.9975842281816307,0.00044217175079833354,0.9995440490245684,7.73668003909697e-05,0.9914718614718615,0.9861471861471861,0.9967965367965368,0.19665084198652794,0.13465787242039906,0.046027677478079676,0.3773363918850067,27.639461251790532,24.7
17
+ ye2026_sepsis,scored,strict,,scsemi,R2,dm,11550,11550,,,,,,,,,,,,,0.9955974025974026,0.0010458139398763096,0.9989297239556981,0.000147541975635008,0.9814718614718615,0.969004329004329,0.9939393939393939,0.12975196728774363,0.0803660865681255,0.026369114031413954,0.23648716788728308,27.639461251790532,26.5
18
+ ye2026_sepsis,scored,strict,,raw,R1,raw,11550,11550,0.2703896103896104,0.0354978354978355,0.15082251082251083,0.8750324682351671,0.4005194805194805,0.048225108225108226,0.1728831168831169,0.9687702904505108,0.616969696969697,0.07333333333333333,0.22025108225108223,0.9990257609379009,0.997247484117614,0.000843035360563428,0.9990474129045559,0.00019108188864378286,0.9888744588744589,0.9837229437229438,0.994025974025974,0.1501514358537528,0.19002290235017338,0.08066277081350504,0.4208371090174312,27.639461251790532,27.5
19
+ ye2026_sepsis,scored,strict,,raw,R1,dm,11550,11550,0.30173160173160174,0.03471861471861472,0.16412698412698412,0.8750324682351671,0.43142857142857144,0.046753246753246755,0.17719480519480518,0.9687702904505108,0.6073593073593073,0.07341991341991343,0.1912034632034632,0.9990257609379009,0.9971014411274151,0.0008748978890793836,0.9989320477502297,0.000329413196062399,0.9879653679653679,0.9828571428571429,0.9930735930735931,0.15663730143425764,0.1922907548797802,0.08035438317374521,0.42928243948778305,27.639461251790532,27.3
20
+ ye2026_sepsis,scored,strict,,raw,R2,raw,11550,11550,,,,,,,,,,,,,0.9971224302393134,0.0006062372736410542,0.9989577968928618,0.00032691319116685857,0.9898268398268398,0.9879653679653679,0.9916883116883117,0.15687829585794874,0.1933759481996561,0.0815192656080308,0.43177350966563566,27.639461251790532,25.0
21
+ ye2026_sepsis,scored,strict,,raw,R2,dm,11550,11550,,,,,,,,,,,,,0.9976192350218323,0.00021774682506390795,0.9988891699930662,0.00038162272480296024,0.9891341991341991,0.9883982683982684,0.9898701298701299,0.16270570365028217,0.19544948392270822,0.08117882385908248,0.43933401143207285,27.639461251790532,24.8
22
+ ye2026_sepsis,scored,strict,,refcal,R1,raw,11550,11550,0.48294372294372295,0.09584415584415584,0.2952669552669553,0.8750324682351671,0.6421645021645022,0.12961038961038962,0.30888311688311687,0.9687702904505108,0.8221645021645022,0.190995670995671,0.3236017316017316,0.9990257609379009,0.9921534828807556,0.0013796648742351277,0.9961239669421488,0.0004439384110418744,0.9696969696969697,0.9541991341991342,0.9851948051948052,0.1357907648905885,0.08219073802382626,0.026092504614007694,0.24407400752842245,27.639461251790532,27.6
23
+ ye2026_sepsis,scored,strict,,refcal,R1,dm,11550,11550,0.4649350649350649,0.20086580086580086,0.32187590187590187,0.8750324682351671,0.6013852813852814,0.27385281385281385,0.3332987012987013,0.9687702904505108,0.7898701298701298,0.3825108225108225,0.365991341991342,0.9990257609379009,0.9856031183823392,0.002606454670226281,0.9905582728959352,0.0009484704625578761,0.9386147186147186,0.9116883116883117,0.9655411255411256,0.10059780842720023,0.06137454017446253,0.020243262602845924,0.1822156112045087,27.639461251790532,27.4
24
+ ye2026_sepsis,scored,strict,,refcal,R2,raw,11550,11550,,,,,,,,,,,,,0.9942659245516389,0.0011369625452857348,0.9968110979929161,0.0007810366787938183,0.9731168831168832,0.9666666666666667,0.9795670995670995,0.13645510509189201,0.0825644590008685,0.02632129729624899,0.2453408613890095,27.639461251790532,25.6
25
+ ye2026_sepsis,scored,strict,,refcal,R2,dm,11550,11550,,,,,,,,,,,,,0.9867478682933228,0.002009191285164236,0.9910031108862277,0.0010482783810617056,0.9388311688311688,0.9191341991341991,0.9585281385281386,0.10150874550892786,0.061764640501083434,0.02033563945894823,0.18360902546895952,27.639461251790532,25.4
paper-releases/pbisc-diffusion/updates/20261013T034842Z-expanded-131-slide-master/diffusion/dataset/server_1/model8/presentations/2026-09-30--paper-summary--r00/data/expanded_master_20261013/disease/strict_snapshot_tables/scores/ye2026_sepsis/disease/draw3/statistics/donor_deg/donor_deg_summary.csv ADDED
@@ -0,0 +1,26 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ arm,celltype,status,observed_status,generated_status,n_case_donors_observed,n_control_donors_observed,n_case_donors_generated,n_control_donors_generated,method_observed,method_generated,reason_observed,reason_generated,reason_fit,reason_population,top50_overlap_count,observed_top50_size,generated_top50_size
2
+ lora,T cell,ok,ok,ok,57,20,57,20,edgeR_TMM_limma_voom,edgeR_TMM_limma_voom,,,,,4,50,50
3
+ lora,B cell,ok,ok,ok,57,20,57,20,edgeR_TMM_limma_voom,edgeR_TMM_limma_voom,,,,,1,50,9
4
+ lora,Monocyte,ok,ok,ok,57,20,57,20,edgeR_TMM_limma_voom,edgeR_TMM_limma_voom,,,,,6,50,45
5
+ lora,NK cell,ok,ok,ok,57,20,57,20,edgeR_TMM_limma_voom,edgeR_TMM_limma_voom,,,,,3,50,50
6
+ lora,DC,ok,ok,ok,53,20,53,20,edgeR_TMM_limma_voom,edgeR_TMM_limma_voom,,,,,2,50,50
7
+ pairedcal,T cell,ok,ok,ok,57,20,57,20,edgeR_TMM_limma_voom,edgeR_TMM_limma_voom,,,,,1,50,50
8
+ pairedcal,B cell,ok,ok,ok,57,20,57,20,edgeR_TMM_limma_voom,edgeR_TMM_limma_voom,,,,,2,50,50
9
+ pairedcal,Monocyte,ok,ok,ok,57,20,57,20,edgeR_TMM_limma_voom,edgeR_TMM_limma_voom,,,,,6,50,50
10
+ pairedcal,NK cell,ok,ok,ok,57,20,57,20,edgeR_TMM_limma_voom,edgeR_TMM_limma_voom,,,,,1,50,32
11
+ pairedcal,DC,ok,ok,ok,53,20,54,20,edgeR_TMM_limma_voom,edgeR_TMM_limma_voom,,,,,0,50,3
12
+ scsemi,T cell,ok,ok,ok,57,20,57,20,edgeR_TMM_limma_voom,edgeR_TMM_limma_voom,,,,,3,50,50
13
+ scsemi,B cell,ok,ok,ok,57,20,57,20,edgeR_TMM_limma_voom,edgeR_TMM_limma_voom,,,,,5,50,50
14
+ scsemi,Monocyte,ok,ok,ok,57,20,56,20,edgeR_TMM_limma_voom,edgeR_TMM_limma_voom,,,,,3,50,50
15
+ scsemi,NK cell,ok,ok,ok,57,20,56,19,edgeR_TMM_limma_voom,edgeR_TMM_limma_voom,,,,,7,50,50
16
+ scsemi,DC,ok,ok,ok,53,20,56,20,edgeR_TMM_limma_voom,edgeR_TMM_limma_voom,,,,,5,50,50
17
+ raw,T cell,ok,ok,ok,57,20,57,20,edgeR_TMM_limma_voom,edgeR_TMM_limma_voom,,,,,3,50,50
18
+ raw,B cell,ok,ok,ok,57,20,57,20,edgeR_TMM_limma_voom,edgeR_TMM_limma_voom,,,,,0,50,27
19
+ raw,Monocyte,ok,ok,ok,57,20,57,20,edgeR_TMM_limma_voom,edgeR_TMM_limma_voom,,,,,6,50,50
20
+ raw,NK cell,ok,ok,ok,57,20,57,20,edgeR_TMM_limma_voom,edgeR_TMM_limma_voom,,,,,3,50,50
21
+ raw,DC,ok,ok,ok,53,20,57,20,edgeR_TMM_limma_voom,edgeR_TMM_limma_voom,,,,,0,50,0
22
+ refcal,T cell,ok,ok,ok,57,20,57,20,edgeR_TMM_limma_voom,edgeR_TMM_limma_voom,,,,,1,50,50
23
+ refcal,B cell,ok,ok,ok,57,20,57,20,edgeR_TMM_limma_voom,edgeR_TMM_limma_voom,,,,,0,50,0
24
+ refcal,Monocyte,ok,ok,ok,57,20,57,20,edgeR_TMM_limma_voom,edgeR_TMM_limma_voom,,,,,5,50,50
25
+ refcal,NK cell,ok,ok,ok,57,20,57,20,edgeR_TMM_limma_voom,edgeR_TMM_limma_voom,,,,,3,50,50
26
+ refcal,DC,ok,ok,ok,53,20,57,20,edgeR_TMM_limma_voom,edgeR_TMM_limma_voom,,,,,0,50,21