Archive 4 checkpoints (1-4)

paper-releases/pbisc-diffusion/updates/20261013T034842Z-expanded-131-slide-master/diffusion/dataset/server_1/model8/presentations/2026-09-30--paper-summary--r00/data/expanded_master_20261013/disease/sepsis_rare_support.csv

@@ -0,0 +1,106 @@
+arm,state,thin,gen,obs_thinned,obs_native_n,gen_pct,obs_pct,gen_over_obs,spearman_donors
+zs__raw,C1Q-high monocyte (reference),0.421,"63 / 45,474","5,908 / 111,269",6788,0.1385407045784404,5.309654980273032,0.0260922235235925,0.1489702234921987
+zs__raw,Cycling T/NK,0.419,"294 / 54,913","2,232 / 345,949",3461,0.5353923478957624,0.6451818042543843,0.8298317534148347,0.118791190464879
+zs__raw,Cycling activated T (CD38/HLA-DR),0.441,"168 / 43,347","3,198 / 298,117",5877,0.3875700740535677,1.0727331886474103,0.3612921443609364,0.0337472526037321
+zs__raw,Proliferating T (label),1.0,"1,369 / 43,347","4,793 / 298,117",4793,3.158234710591275,1.6077580278883794,1.964371911573835,-0.0187090840823183
+zs__raw,Plasmablast (label),1.0,"678 / 123,000","8,423 / 589,478",8423,0.551219512195122,1.4288913241885193,0.3857672748542753,0.332079208107119
+zs__raw,Plasmablast (markers),0.495,"882 / 123,000","15,275 / 589,478",26774,0.7170731707317073,2.5912756710174087,0.2767259303021835,0.3760753502012829
+zs__raw,MS1 monocyte (IL1R2+),0.421,"403 / 45,474","12,363 / 111,269",18712,0.8862206975414523,11.110911394907836,0.0797612964448271,0.5257984199802778
+zs__raw,Cycling monocyte (Ye 2026),0.421,"103 / 45,474","2,618 / 111,269",4601,0.2265030566917359,2.352856590784495,0.0962672597976805,0.1906973956442681
+zs__raw,ISG-high monocyte (positive control),0.421,"8,106 / 45,474","11,029 / 111,269",21377,17.825570655759336,9.912015026647136,1.7983801081654598,0.4960865732106126
+zs__raw,ISG-high T,0.441,"1,144 / 43,347","4,514 / 298,117",10685,2.6391676471266754,1.5141706108675452,1.742979046208381,0.4318900536809882
+zs__raw,DN2 / ABC B,0.575,"710 / 18,316","2,592 / 99,729",4309,3.87639222537672,2.59904340763469,1.491468828104147,0.1050282977859333
+zs__raw,HSPC,0.495,"72 / 123,000","629 / 589,478",741,0.0585365853658536,0.1067045759129263,0.5485855209585482,-0.0055129034687667
+zs__raw,Cytotoxic CD4 T,0.619,"85 / 15,654","1,767 / 140,213",2091,0.5429922064648013,1.2602255140393543,0.4308690789193502,0.375146525042665
+zs__raw,Granulocyte-like (LDG),0.495,"321 / 123,000","6,501 / 589,478",14337,0.2609756097560975,1.1028401399204042,0.2366395638944853,0.4168937552291161
+zs__raw,Platelet signal in monocytes (negative control),0.421,"1,308 / 45,474","11,518 / 111,269",23329,2.8763689141047637,10.351490531954092,0.2778700231841664,0.2336294986182663
+lora_n5__raw,C1Q-high monocyte (reference),0.821,"669 / 21,211","6,599 / 111,269",6788,3.1540238555466504,5.930672514357099,0.5318155483903928,0.1513362645861456
+lora_n5__raw,Cycling T/NK,0.929,"211 / 76,200","3,337 / 345,949",3461,0.2769028871391076,0.9645930469520074,0.2870670569460207,0.1169534180795503
+lora_n5__raw,Cycling activated T (CD38/HLA-DR),0.914,"205 / 71,032","5,521 / 298,117",5877,0.2886023200810902,1.8519574529463263,0.1558363663387327,0.1209221303394648
+lora_n5__raw,Proliferating T (label),1.0,"703 / 71,032","4,793 / 298,117",4793,0.9896947854488118,1.6077580278883794,0.6155744634960222,0.221586116529293
+lora_n5__raw,Plasmablast (label),1.0,"712 / 123,000","8,423 / 589,478",8423,0.5788617886178862,1.4288913241885193,0.4051125364251386,0.1249017258082388
+lora_n5__raw,Plasmablast (markers),0.908,"998 / 123,000","24,644 / 589,478",26774,0.8113821138211382,4.180647963113128,0.1940804681427758,0.358687825158033
+lora_n5__raw,MS1 monocyte (IL1R2+),0.821,"2,129 / 21,211","17,344 / 111,269",18712,10.037244825797934,15.587450233218595,0.6439311545904695,0.4586163236349482
+lora_n5__raw,Cycling monocyte (Ye 2026),0.821,"235 / 21,211","4,040 / 111,269",4601,1.107915704115789,3.6308405755421536,0.3051402784189597,0.1443735583317668
+lora_n5__raw,ISG-high monocyte (positive control),0.821,"1,957 / 21,211","18,652 / 111,269",21377,9.2263448210834,16.762979805696105,0.550400043907961,0.3110630205403783
+lora_n5__raw,ISG-high T,0.914,"898 / 71,032","9,772 / 298,117",10685,1.2642189435747269,3.2779076671239817,0.3856786316021969,0.5107235308375224
+lora_n5__raw,DN2 / ABC B,0.915,"363 / 21,371","4,005 / 99,729",4309,1.6985634738664546,4.0158830430466566,0.4229613899755996,0.0403332596211921
+lora_n5__raw,HSPC,0.908,"107 / 123,000","722 / 589,478",741,0.0869918699186991,0.122481246119448,0.7102464473121186,-0.0026022232629589
+lora_n5__raw,Cytotoxic CD4 T,0.949,"518 / 33,233","2,055 / 140,213",2091,1.558691661902326,1.465627295614529,1.0634979756219507,0.5545961359011299
+lora_n5__raw,Granulocyte-like (LDG),0.908,"106 / 123,000","12,971 / 589,478",14337,0.0861788617886178,2.200421389771968,0.0391647082641514,0.3521423276122163
+lora_n5__raw,Platelet signal in monocytes (negative control),0.821,"2,194 / 21,211","20,099 / 111,269",23329,10.343689595021452,18.06343186332222,0.5726314729829554,0.200692431921523
+lora_n10__raw,C1Q-high monocyte (reference),0.884,"673 / 22,416","6,655 / 111,269",6788,3.0023197715917203,5.981000997582435,0.5019761362362721,0.189701979667917
+lora_n10__raw,Cycling T/NK,0.966,"176 / 76,060","3,394 / 345,949",3461,0.231396266105706,0.981069463996138,0.235861245913385,0.2122463216863031
+lora_n10__raw,Cycling activated T (CD38/HLA-DR),0.954,"200 / 70,094","5,683 / 298,117",5877,0.2853311267726196,1.9062985337971332,0.1496780917122524,0.2364286544710933
+lora_n10__raw,Proliferating T (label),1.0,"601 / 70,094","4,793 / 298,117",4793,0.857420035951722,1.6077580278883794,0.533301666717754,0.2974362882515114
+lora_n10__raw,Plasmablast (label),1.0,"691 / 123,000","8,423 / 589,478",8423,0.5617886178861788,1.4288913241885193,0.3931639925137231,0.1625895000424927
+lora_n10__raw,Plasmablast (markers),0.942,"946 / 123,000","25,453 / 589,478",26774,0.7691056910569106,4.317888029748354,0.178120804837483,0.3617294356859082
+lora_n10__raw,MS1 monocyte (IL1R2+),0.884,"2,000 / 22,416","17,844 / 111,269",18712,8.922198429693076,16.036811690587676,0.5563573733879841,0.4228914930174955
+lora_n10__raw,Cycling monocyte (Ye 2026),0.884,"153 / 22,416","4,273 / 111,269",4601,0.6825481798715204,3.840243014676145,0.1777356738266421,0.2971974592705747
+lora_n10__raw,ISG-high monocyte (positive control),0.884,"1,882 / 22,416","19,580 / 111,269",21377,8.395788722341186,17.596994670573114,0.477114921014393,0.4254902546252257
+lora_n10__raw,ISG-high T,0.954,"1,035 / 70,094","10,140 / 298,117",10685,1.4765885810483066,3.4013491347356912,0.4341184990299586,0.4409636511951133
+lora_n10__raw,DN2 / ABC B,0.907,"377 / 20,791","3,942 / 99,729",4309,1.8132845942956088,3.952711849111091,0.4587444426801287,0.0968323594307506
+lora_n10__raw,HSPC,0.942,"91 / 123,000","733 / 589,478",741,0.0739837398373983,0.1243473038858108,0.5949766301755788,0.1192649246415992
+lora_n10__raw,Cytotoxic CD4 T,0.995,"567 / 31,214","2,089 / 140,213",2091,1.8164925994745944,1.4898761170504875,1.2192239198187234,0.5837873826627875
+lora_n10__raw,Granulocyte-like (LDG),0.942,"124 / 123,000","13,503 / 589,478",14337,0.1008130081300813,2.2906707290178767,0.0440102572809776,0.5422275413764622
+lora_n10__raw,Platelet signal in monocytes (negative control),0.884,"2,308 / 22,416","21,268 / 111,269",23329,10.29621698786581,19.114038950651125,0.5386730148687422,0.1572818423653342
+lora_n20__raw,C1Q-high monocyte (reference),0.868,"1,023 / 24,014","6,665 / 111,269",6788,4.260014991255101,5.989988226729817,0.7111892093952946,0.3185139516472846
+lora_n20__raw,Cycling T/NK,1.0,"331 / 73,635","3,461 / 345,949",3461,0.4495144971820465,1.0004364805216954,0.4493183784618082,0.3310440163376672
+lora_n20__raw,Cycling activated T (CD38/HLA-DR),1.0,"344 / 66,642","5,877 / 298,117",5877,0.5161909906665466,1.971373655309828,0.2618433036660522,0.2029421264278597
+lora_n20__raw,Proliferating T (label),1.0,"803 / 66,642","4,793 / 298,117",4793,1.204945829957084,1.6077580278883794,0.7494572000611642,0.2567931607694604
+lora_n20__raw,Plasmablast (label),1.0,"1,826 / 123,000","8,423 / 589,478",8423,1.4845528455284551,1.4288913241885193,1.0389543420116618,0.2912144256082107
+lora_n20__raw,Plasmablast (markers),0.999,"2,262 / 123,000","26,759 / 589,478",26774,1.8390243902439023,4.539439979100153,0.4051214243851396,0.447713366944425
+lora_n20__raw,MS1 monocyte (IL1R2+),0.868,"2,024 / 24,014","17,768 / 111,269",18712,8.428416756891814,15.968508749067574,0.5278148942608033,0.4408226944731059
+lora_n20__raw,Cycling monocyte (Ye 2026),0.868,"134 / 24,014","4,201 / 111,269",4601,0.5580078287665529,3.775534964814998,0.1477956988788992,0.2096033416255391
+lora_n20__raw,ISG-high monocyte (positive control),0.868,"2,415 / 24,014","19,387 / 111,269",21377,10.056633630382278,17.42354114802865,0.5771865515133882,0.6123010044429504
+lora_n20__raw,ISG-high T,1.0,"1,238 / 66,642","10,685 / 298,117",10685,1.8576873443173971,3.584163264758468,0.5183043313297796,0.6965063308000584
+lora_n20__raw,DN2 / ABC B,0.969,"332 / 20,402","4,192 / 99,729",4309,1.6272914420154887,4.203391190125239,0.3871377581602163,0.0949804618585874
+lora_n20__raw,HSPC,0.999,"113 / 123,000","741 / 589,478",741,0.091869918699187,0.1257044368068019,0.7308407008766443,0.0539846309614091
+lora_n20__raw,Cytotoxic CD4 T,1.0,"626 / 29,696","2,091 / 140,213",2091,2.1080280172413794,1.491302518311426,1.4135482179888357,0.6690398140122548
+lora_n20__raw,Granulocyte-like (LDG),0.999,"162 / 123,000","14,326 / 589,478",14337,0.1317073170731707,2.430285778264837,0.0541941685422717,0.3731584062810275
+lora_n20__raw,Platelet signal in monocytes (negative control),0.868,"2,634 / 24,014","20,934 / 111,269",23329,10.968601649038062,18.81386549712858,0.583006275383021,0.0756536695871598
+lora_n40__raw,C1Q-high monocyte (reference),0.803,"613 / 24,297","6,560 / 111,269",6788,2.522945219574433,5.89562232068231,0.4279353531049201,0.2050316783511974
+lora_n40__raw,Cycling T/NK,1.0,"399 / 73,105","3,461 / 345,949",3461,0.5457903016209562,1.0004364805216954,0.5455521787213758,0.3117085660076371
+lora_n40__raw,Cycling activated T (CD38/HLA-DR),1.0,"426 / 65,276","5,877 / 298,117",5877,0.6526135179851706,1.971373655309828,0.3310450640482986,0.1475781005462715
+lora_n40__raw,Proliferating T (label),1.0,"899 / 65,276","4,793 / 298,117",4793,1.3772289968748086,1.6077580278883794,0.8566145980833034,0.3785216346901005
+lora_n40__raw,Plasmablast (label),1.0,"1,263 / 123,000","8,423 / 589,478",8423,1.026829268292683,1.4288913241885193,0.7186195695294244,0.3037702376363167
+lora_n40__raw,Plasmablast (markers),0.955,"1,706 / 123,000","25,723 / 589,478",26774,1.3869918699186992,4.363691265831804,0.3178483044341387,0.4822858890418341
+lora_n40__raw,MS1 monocyte (IL1R2+),0.803,"3,317 / 24,297","17,254 / 111,269",18712,13.651891179981067,15.506565170892165,0.8803942736207914,0.5659605988398115
+lora_n40__raw,Cycling monocyte (Ye 2026),0.803,"165 / 24,297","4,027 / 111,269",4601,0.6790961847141622,3.619157177650559,0.1876393180455925,0.0793942495634246
+lora_n40__raw,ISG-high monocyte (positive control),0.803,"2,173 / 24,297","18,312 / 111,269",21377,8.943490965962877,16.45741401468513,0.5434323374244885,0.6383832859142597
+lora_n40__raw,ISG-high T,1.0,"1,471 / 65,276","10,685 / 298,117",10685,2.253508180648324,3.584163264758468,0.6287403821154295,0.7028063271673536
+lora_n40__raw,DN2 / ABC B,0.946,"218 / 19,980","4,115 / 99,729",4309,1.0910910910910911,4.126181953092882,0.2644311626328637,0.1403130686868474
+lora_n40__raw,HSPC,0.955,"83 / 123,000","736 / 589,478",741,0.0674796747967479,0.1248562287311825,0.5404590182043124,0.1483109582991646
+lora_n40__raw,Cytotoxic CD4 T,1.0,"597 / 28,478","2,091 / 140,213",2091,2.096355081115247,1.491302518311426,1.4057208751239223,0.6881740428039519
+lora_n40__raw,Granulocyte-like (LDG),0.955,"231 / 123,000","13,678 / 589,478",14337,0.1878048780487805,2.320358011664557,0.0809378885088748,0.3662522241629035
+lora_n40__raw,Platelet signal in monocytes (negative control),0.803,"2,583 / 24,297","19,803 / 111,269",23329,10.630942091616248,17.797409880559723,0.5973308567348626,0.1225536151644966
+real_lora__raw,C1Q-high monocyte (reference),0.823,"676 / 22,723","6,595 / 111,269",6788,2.974959292346961,5.927077622698146,0.5019268316909083,0.2233083044327938
+real_lora__raw,Cycling T/NK,1.0,"405 / 75,578","3,461 / 345,949",3461,0.5358702267855725,1.0004364805216954,0.5356364319163306,0.3321315547445843
+real_lora__raw,Cycling activated T (CD38/HLA-DR),0.996,"396 / 67,850","5,861 / 298,117",5877,0.5836403831982314,1.966006634978884,0.2968659275173301,0.1716279437546411
+real_lora__raw,Proliferating T (label),1.0,"846 / 67,850","4,793 / 298,117",4793,1.24686809137804,1.6077580278883794,0.7755321819264492,0.3863061258975033
+real_lora__raw,Plasmablast (label),1.0,"1,331 / 123,000","8,423 / 589,478",8423,1.0821138211382113,1.4288913241885193,0.7573100926711511,0.1953379552172448
+real_lora__raw,Plasmablast (markers),0.957,"1,803 / 123,000","25,829 / 589,478",26774,1.4658536585365851,4.381673277034936,0.3345419810781793,0.427490440746068
+real_lora__raw,MS1 monocyte (IL1R2+),0.823,"2,507 / 22,723","17,348 / 111,269",18712,11.032874180345903,15.59104512487755,0.707641732287819,0.5702281243191761
+real_lora__raw,Cycling monocyte (Ye 2026),0.823,"189 / 22,723","4,067 / 111,269",4601,0.8317563701975972,3.655106094240085,0.22756011693021,0.1219317523340689
+real_lora__raw,ISG-high monocyte (positive control),0.823,"2,332 / 22,723","18,712 / 111,269",21377,10.262729393125907,16.816903180580397,0.6102627388006234,0.6345367035230509
+real_lora__raw,ISG-high T,0.996,"1,378 / 67,850","10,643 / 298,117",10685,2.0309506263817245,3.57007483638974,0.5688818076529555,0.6989973853582776
+real_lora__raw,DN2 / ABC B,0.934,"249 / 19,896","4,051 / 99,729",4309,1.2515078407720144,4.06200804179326,0.3081007787024246,0.4161372455382001
+real_lora__raw,HSPC,0.957,"61 / 123,000","736 / 589,478",741,0.0495934959349593,0.1248562287311825,0.3972048206079887,0.0506011363469423
+real_lora__raw,Cytotoxic CD4 T,1.0,"609 / 30,246","2,091 / 140,213",2091,2.013489387026384,1.491302518311426,1.350154889637161,0.6921551991756923
+real_lora__raw,Granulocyte-like (LDG),0.957,"196 / 123,000","13,736 / 589,478",14337,0.1593495934959349,2.330197225341743,0.0683845949874757,0.3808024873541112
+real_lora__raw,Platelet signal in monocytes (negative control),0.823,"2,308 / 22,723","20,106 / 111,269",23329,10.15710953659288,18.069722923725383,0.5621065458207266,0.0937748319091733
+zs__pseudo,C1Q-high monocyte (reference),0.77,"101 / 29,005","6,520 / 111,269",6788,0.3482158248577831,5.859673404092784,0.0594258076934059,0.0392077507047876
+zs__pseudo,Cycling T/NK,1.0,"496 / 70,188","3,461 / 345,949",3461,0.7066735054425258,1.0004364805216954,0.7063651907955399,0.436022465707281
+zs__pseudo,Cycling activated T (CD38/HLA-DR),1.0,"420 / 62,189","5,877 / 298,117",5877,0.675360594317323,1.971373655309828,0.3425837575227112,0.3848126256927748
+zs__pseudo,Proliferating T (label),1.0,"703 / 62,189","4,793 / 298,117",4793,1.1304249947739955,1.6077580278883794,0.7031064222137268,0.4848926821582467
+zs__pseudo,Plasmablast (label),1.0,"812 / 123,000","8,423 / 589,478",8423,0.6601626016260163,1.4288913241885193,0.4620103645747368,0.4882961626189788
+zs__pseudo,Plasmablast (markers),1.0,"1,101 / 123,000","26,774 / 589,478",26774,0.8951219512195122,4.541984603327012,0.1970772755512719,0.5333920515183713
+zs__pseudo,MS1 monocyte (IL1R2+),0.77,"1,949 / 29,005","16,859 / 111,269",18712,6.719531115324944,15.15156961957059,0.4434874593220779,0.396356089216483
+zs__pseudo,Cycling monocyte (Ye 2026),0.77,"131 / 29,005","3,898 / 111,269",4601,0.4516462678848474,3.5032219216493363,0.1289231107780377,0.2490810261530774
+zs__pseudo,ISG-high monocyte (positive control),0.77,"3,172 / 29,005","17,832 / 111,269",21377,10.936045509394932,16.02602701561082,0.682392803827313,0.5639091499506319
+zs__pseudo,ISG-high T,1.0,"1,346 / 62,189","10,685 / 298,117",10685,2.164369904645516,3.584163264758468,0.6038703442800255,0.5413156013659841
+zs__pseudo,DN2 / ABC B,1.0,"161 / 20,462","4,309 / 99,729",4309,0.7868243573453231,4.320709121719861,0.182105375571343,-0.038964054591653
+zs__pseudo,HSPC,1.0,"344 / 123,000","741 / 589,478",741,0.2796747967479674,0.1257044368068019,2.224860186739519,-0.0895992570669393
+zs__pseudo,Cytotoxic CD4 T,1.0,"761 / 29,849","2,091 / 140,213",2091,2.549499145700024,1.491302518311426,1.7095787839121828,0.6505747407890214
+zs__pseudo,Granulocyte-like (LDG),1.0,"79 / 123,000","14,337 / 589,478",14337,0.0642276422764227,2.4321518360312004,0.026407743679864,0.6246937345564946
+zs__pseudo,Platelet signal in monocytes (negative control),0.77,"1,348 / 29,005","19,111 / 111,269",23329,4.647474573349423,17.17549362356092,0.2705875403181502,0.5096564788314847

paper-releases/pbisc-diffusion/updates/20261013T034842Z-expanded-131-slide-master/diffusion/dataset/server_1/model8/presentations/2026-09-30--paper-summary--r00/data/expanded_master_20261013/disease/strict_imperial_draw0_quality.csv

@@ -0,0 +1,6 @@
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paper-releases/pbisc-diffusion/updates/20261013T034842Z-expanded-131-slide-master/diffusion/dataset/server_1/model8/presentations/2026-09-30--paper-summary--r00/data/expanded_master_20261013/disease/strict_imperial_eskd_deg.csv

@@ -0,0 +1,26 @@
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paper-releases/pbisc-diffusion/updates/20261013T034842Z-expanded-131-slide-master/diffusion/dataset/server_1/model8/presentations/2026-09-30--paper-summary--r00/data/expanded_master_20261013/disease/strict_sepsis_quality.csv

@@ -0,0 +1,26 @@
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