Archive 4 checkpoints (1-4)

paper-releases/pbisc-diffusion/updates/20261005T142225Z-rare-states-scratch-vs-pretrained/diffusion/dataset/server_1/model8/plans/rare_states_screen_20261004/out/scratch_vs_lora_20261005/verify_recompute_cross_depth.csv

@@ -0,0 +1,73 @@
+arm,parent,n_cells_all,median_lib_all_cells,n_parent,median_lib_parent,mean_detected_markers_of_73,umis_per_detected_marker,bench_umi_gen,bench_umi_obs,bench_detected_gen,bench_detected_obs,bench_precision,bench_coverage,det_HLA-DRA,det_NKG7,det_GZMA,det_CCR7,det_CR2,det_ZEB2,det_PLAC8,screen_thin,implied_obs_median_lib_parent
+zs,Monocyte,123000,973.0,45474,1187.0,8.899788890354928,3.4254439609694867,979.0,1967.0,340.0,411.0,0.6169918699186991,0.07398373983739838,0.7514623741038835,0.16455557021594758,0.02535514799665743,0.03034701147908695,2.1990588028323877e-05,0.8324537098122003,0.36033777543211504,0.421,2819.477434679335
+zs,T cell+NK cell,123000,973.0,54913,787.0,6.040500427949666,5.687975954320445,979.0,1967.0,340.0,411.0,0.6169918699186991,0.07398373983739838,0.06566751042558229,0.6101833809844663,0.48922841585781146,0.24870249303443628,1.8210624078087155e-05,0.3580026587511154,0.38797734598364686,0.419,1878.2816229116945
+zs,T cell,123000,973.0,43347,874.0,5.062149629732161,4.926577617361424,979.0,1967.0,340.0,411.0,0.6169918699186991,0.07398373983739838,0.07200036911435624,0.5170138648580063,0.40743304034881306,0.3088564375850693,2.3069647265093315e-05,0.29381502756822847,0.3285809859967241,0.441,1981.859410430839
+zs,ALL,123000,973.0,123000,973.0,6.83069918699187,5.240575784121422,979.0,1967.0,340.0,411.0,0.6169918699186991,0.07398373983739838,0.46484552845528454,0.34576422764227643,0.229869918699187,0.16995934959349593,0.0010487804878048781,0.5163821138211382,0.3728048780487805,0.495,1965.6565656565656
+zs,B cell,123000,973.0,18316,1111.0,4.42465603843634,10.63221539448681,979.0,1967.0,340.0,411.0,0.6169918699186991,0.07398373983739838,0.9680061148722429,0.05110286088665648,0.009281502511465386,0.2975540511028609,0.006933828346800611,0.24443109849312078,0.3928805416029701,0.575,1932.1739130434785
+zs,Naive CD4 T cell+Memory CD4 T cell+Treg,123000,973.0,15654,1400.0,2.1841701801456495,1.9694656488549618,979.0,1967.0,340.0,411.0,0.6169918699186991,0.07398373983739838,0.03947872748179379,0.10974830714194456,0.028682764788552445,0.5758272645969081,6.388143605468251e-05,0.023636131340232527,0.309058387632554,0.619,2261.712439418417
+xcal,Monocyte,123000,1628.0,32496,2255.0,9.378077301821763,3.2217194421657096,1628.0,1967.0,269.0,411.0,0.8960975609756098,0.4638211382113821,0.7956671590349581,0.34093426883308714,0.04889832594780896,0.03283481043820778,0.0,0.6009047267355982,0.6000123092072871,0.799,2822.277847309136
+xcal,T cell+NK cell,123000,1628.0,69407,1444.0,6.886149811978619,7.259116596610085,1628.0,1967.0,269.0,411.0,0.8960975609756098,0.4638211382113821,0.12795539354820118,0.7012261011137205,0.6385378996354835,0.166971631103491,0.00010085438068206377,0.25379284510207906,0.4086043194490469,0.769,1877.7633289986995
+xcal,T cell,123000,1628.0,57613,1543.0,6.224133442105081,6.19154133818194,1628.0,1967.0,269.0,411.0,0.8960975609756098,0.4638211382113821,0.13776404630899275,0.6425112387829136,0.5825247773939909,0.19823650912120527,0.00012150035582247062,0.23381875618350026,0.35950219568500164,0.779,1980.744544287548
+xcal,ALL,123000,1628.0,123000,1628.0,7.255512195121951,6.132187694693577,1628.0,1967.0,269.0,411.0,0.8960975609756098,0.4638211382113821,0.43034146341463414,0.4992520325203252,0.3753983739837398,0.1408130081300813,0.0007560975609756098,0.33221951219512197,0.4633821138211382,0.828,1966.183574879227
+xcal,B cell,123000,1628.0,17472,1907.0,4.980940934065934,9.815884725430038,1628.0,1967.0,269.0,411.0,0.8960975609756098,0.4638211382113821,0.9451694139194139,0.04366987179487179,0.008527930402930402,0.25148809523809523,0.004922161172161172,0.158768315018315,0.46136675824175827,0.987,1932.1175278622088
+xcal,Naive CD4 T cell+Memory CD4 T cell+Treg,123000,1628.0,15566,2078.0,2.601696004111525,2.201787742604573,1628.0,1967.0,269.0,411.0,0.8960975609756098,0.4638211382113821,0.08480020557625595,0.09218810227418733,0.07375048181934986,0.4552229217525376,0.00012848515996402416,0.02222793267377618,0.30611589361428754,0.919,2261.153427638738
+r16,Monocyte,123000,1135.0,22524,1123.0,5.500577162138164,2.666677428467654,1135.0,1967.0,243.0,411.0,0.8611382113821138,0.3413821138211382,0.6404723850115432,0.14322500443970876,0.012209199076540578,0.006481974782454271,0.0,0.4452583910495472,0.36782987036050435,0.398,2821.6080402010048
+r16,T cell+NK cell,123000,1135.0,66367,1082.0,5.47769222655838,5.393097832963817,1135.0,1967.0,243.0,411.0,0.8611382113821138,0.3413821138211382,0.0567450690855395,0.6151400545451806,0.5254117257070532,0.14135036991275785,0.00021094821221390148,0.16161646601473623,0.3127156568776651,0.576,1878.4722222222224
+r16,T cell,123000,1135.0,51586,1190.0,4.4783662233939445,4.180243354500241,1135.0,1967.0,243.0,411.0,0.8611382113821138,0.3413821138211382,0.05862055596479665,0.5081223587795138,0.42870158570154693,0.1772380103128756,0.0002520063583142713,0.1332919784437638,0.24388399953475748,0.601,1980.0332778702164
+r16,ALL,123000,1135.0,123000,1135.0,5.312463414634147,5.229253802608683,1135.0,1967.0,243.0,411.0,0.8611382113821138,0.3413821138211382,0.39160162601626014,0.3735691056910569,0.2875447154471545,0.11839024390243902,0.0015609756097560976,0.20597560975609755,0.32722764227642276,0.577,1967.0710571923744
+r16,B cell,123000,1135.0,28860,1248.0,4.659078309078309,6.401402637195916,1135.0,1967.0,243.0,411.0,0.8611382113821138,0.3413821138211382,0.9216909216909217,0.03922383922383922,0.0059251559251559255,0.17054747054747055,0.006167706167706168,0.10682605682605682,0.3338184338184338,0.646,1931.8885448916408
+r16,Naive CD4 T cell+Memory CD4 T cell+Treg,123000,1135.0,18454,1563.0,1.9654275495827462,2.061759029500965,1135.0,1967.0,243.0,411.0,0.8611382113821138,0.3413821138211382,0.03446407282973881,0.05874065243307684,0.06042050503955782,0.2944077164842311,0.0003793215563021567,0.013330443264332937,0.21680936382356128,0.691,2261.9392185238785
+r64,Monocyte,123000,1013.0,20054,1061.0,5.290515607858781,2.5356846629467653,1013.0,1967.0,232.0,411.0,0.828130081300813,0.2891869918699187,0.604418071207739,0.11364316345866161,0.01027226488481101,0.004188690535554004,0.0,0.453625211927795,0.34865862172135237,0.376,2821.808510638298
+r64,T cell+NK cell,123000,1013.0,62886,968.0,5.62878860159654,5.294921632219498,1013.0,1967.0,232.0,411.0,0.828130081300813,0.2891869918699187,0.05971122348376427,0.6185001431161149,0.5251725344273765,0.10768692554781668,9.541074324968991e-05,0.18290239480965556,0.32363324110294817,0.516,1875.968992248062
+r64,T cell,123000,1013.0,47130,1067.0,4.580521960534691,4.180651287752455,1013.0,1967.0,232.0,411.0,0.828130081300813,0.2891869918699187,0.06632718014003819,0.4963929556545725,0.4230426479949077,0.1400381922342457,0.00010608953957139826,0.15170804158709952,0.25022278803309994,0.539,1979.5918367346937
+r64,ALL,123000,1013.0,123000,1013.0,5.214227642276422,5.307733686754502,1013.0,1967.0,232.0,411.0,0.828130081300813,0.2891869918699187,0.42083739837398376,0.3505447154471545,0.2720894308943089,0.09273983739837398,0.001910569105691057,0.22264227642276424,0.32471544715447154,0.515,1966.9902912621358
+r64,B cell,123000,1013.0,33758,1046.0,4.267758753480656,6.396492007413012,1013.0,1967.0,232.0,411.0,0.828130081300813,0.2891869918699187,0.9327863025060726,0.03276260441969311,0.005302446827418686,0.13262041590141596,0.006753954618164583,0.13987795485514545,0.31936133657207183,0.541,1933.4565619223658
+r64,Naive CD4 T cell+Memory CD4 T cell+Treg,123000,1013.0,17818,1406.0,1.9403973509933774,2.076444727251692,1013.0,1967.0,232.0,411.0,0.828130081300813,0.2891869918699187,0.036479964081266136,0.0485464137389157,0.058031204400044896,0.2559209787854978,0.0,0.020821641037153442,0.2223032888090695,0.622,2260.4501607717043
+full20k,Monocyte,123000,1070.0,24002,954.0,5.774185484542954,2.5956693027014546,1070.0,1967.0,224.0,411.0,0.8376422764227642,0.32926829268292684,0.6092825597866844,0.19848345971169068,0.02362303141404883,0.006124489625864512,8.332638946754438e-05,0.4785851179068411,0.3400549954170486,0.338,2822.4852071005917
+full20k,T cell+NK cell,123000,1070.0,64082,1070.0,5.647951062700915,5.904407457754496,1070.0,1967.0,224.0,411.0,0.8376422764227642,0.32926829268292684,0.07680783995505758,0.6166006054742361,0.5176648668892981,0.15931150713148778,0.00014044505477357137,0.17925470490933493,0.32188446053493963,0.57,1877.1929824561405
+full20k,T cell,123000,1070.0,49480,1226.0,4.696341956345998,4.596462614308768,1070.0,1967.0,224.0,411.0,0.8376422764227642,0.32926829268292684,0.08017380759902991,0.5078011317704123,0.42107922392886016,0.2013338722716249,0.0001818916734033953,0.1463621665319321,0.2612570735650768,0.619,1980.6138933764137
+full20k,ALL,123000,1070.0,123000,1070.0,5.535186991869919,5.862067952551893,1070.0,1967.0,224.0,411.0,0.8376422764227642,0.32926829268292684,0.4076585365853658,0.38197560975609757,0.27783739837398375,0.12150406504065041,0.002113821138211382,0.23421138211382114,0.32743089430894307,0.544,1966.9117647058822
+full20k,B cell,123000,1070.0,30208,1153.0,5.0560447563559325,8.477179129592164,1070.0,1967.0,224.0,411.0,0.8376422764227642,0.32926829268292684,0.9088983050847458,0.05369438559322034,0.010692531779661016,0.14850370762711865,0.008176641949152543,0.1421477754237288,0.3374933792372881,0.596,1934.563758389262
+full20k,Naive CD4 T cell+Memory CD4 T cell+Treg,123000,1070.0,18475,1770.0,2.1430040595399187,2.1913517882400484,1070.0,1967.0,224.0,411.0,0.8376422764227642,0.32926829268292684,0.03897158322056834,0.06646820027063599,0.06571041948579161,0.3461975642760487,0.00010825439783491204,0.01672530446549391,0.2454127198917456,0.782,2263.4271099744246
+full108k,Monocyte,123000,1055.0,19494,1043.0,6.525238534933826,2.6995118039668875,1055.0,1967.0,232.0,411.0,0.8208130081300813,0.3456910569105691,0.6446085975171848,0.244844567559249,0.02200677131425054,0.004719400841284498,0.0,0.5445778188160459,0.36852364830204165,0.37,2818.9189189189187
+full108k,T cell+NK cell,123000,1055.0,64331,1024.0,6.44760690802257,5.831139806307425,1055.0,1967.0,232.0,411.0,0.8208130081300813,0.3456910569105691,0.08031897529962227,0.6648738555284388,0.5483048607980601,0.13136745892338064,0.0001865352629369977,0.24751674931215123,0.34964480577015744,0.546,1875.4578754578754
+full108k,T cell,123000,1055.0,47593,1146.0,5.30397327338054,4.544736800405654,1055.0,1967.0,232.0,411.0,0.8208130081300813,0.3456910569105691,0.0860210535162734,0.5497867333431387,0.43878301430882694,0.17250435988485702,0.00023112642615510684,0.19927300233227577,0.2751455045910113,0.578,1982.6989619377164
+full108k,ALL,123000,1055.0,123000,1055.0,6.158186991869918,5.952898976443548,1055.0,1967.0,232.0,411.0,0.8208130081300813,0.3456910569105691,0.42573170731707316,0.41665040650406504,0.2930569105691057,0.11487804878048781,0.0018211382113821138,0.279869918699187,0.3506991869918699,0.536,1968.283582089552
+full108k,B cell,123000,1055.0,33880,1096.0,5.315053128689493,8.19237646745227,1055.0,1967.0,232.0,411.0,0.8208130081300813,0.3456910569105691,0.900206611570248,0.07435064935064935,0.007615112160566706,0.1620720188902007,0.006227863046044864,0.17027744982290438,0.3485537190082645,0.567,1932.9805996472664
+full108k,Naive CD4 T cell+Memory CD4 T cell+Treg,123000,1055.0,15734,1560.0,2.466187873395195,2.1531324897559467,1055.0,1967.0,232.0,411.0,0.8208130081300813,0.3456910569105691,0.0422651582560061,0.0802720223719334,0.061395703571882544,0.31161815177322993,0.00025422651582560063,0.024342188890301257,0.245709927545443,0.69,2260.8695652173915
+s50k,Monocyte,123000,13891.0,22424,13373.0,6.334418480199786,3.088761853804834,13891.0,1967.0,234.0,411.0,0.999349593495935,0.06260162601626017,0.6547003210845522,0.1279432750624331,0.005931145201569747,0.0007581163039600428,0.0,0.6122458080627898,0.3262575811630396,1.0,
+s50k,T cell+NK cell,123000,13891.0,74248,13939.0,6.056351686240707,7.151979665178175,13891.0,1967.0,234.0,411.0,0.999349593495935,0.06260162601626017,0.07551718564809827,0.6176058614373451,0.5457116690011852,0.12704719319038896,0.0003097726538088568,0.24350824264626655,0.31681661458894517,1.0,
+s50k,T cell,123000,13891.0,55016,14115.0,4.686909262759924,5.262259797172829,13891.0,1967.0,234.0,411.0,0.999349593495935,0.06260162601626017,0.0771411952886433,0.4857496001163298,0.42264068634579033,0.16806020066889632,0.0003453540788134361,0.18810891377053948,0.23380471135669623,1.0,
+s50k,ALL,123000,13891.0,123000,13891.0,5.797837398373984,6.936062507186588,13891.0,1967.0,234.0,411.0,0.999349593495935,0.06260162601626017,0.3625609756097561,0.4054227642276423,0.33114634146341465,0.101,0.0036422764227642276,0.3017967479674797,0.31782926829268293,1.0,
+s50k,B cell,123000,13891.0,22935,14355.0,4.329365598430346,9.93855620682015,13891.0,1967.0,234.0,411.0,0.999349593495935,0.06260162601626017,0.9666884674078918,0.03366034445171136,0.002398081534772182,0.12810115543928494,0.018530630041421407,0.17571397427512536,0.3209941137998692,1.0,
+s50k,Naive CD4 T cell+Memory CD4 T cell+Treg,123000,13891.0,21052,14040.5,1.831369941098233,2.116304404212274,13891.0,1967.0,234.0,411.0,0.999349593495935,0.06260162601626017,0.028358350750522517,0.04783393501805054,0.04930647919437583,0.29284628538856167,0.0004275128253847615,0.012682880486414593,0.20178605358160745,1.0,
+s100k,Monocyte,123000,19138.0,22868,18579.0,5.906987930732902,2.9078034660685073,19138.0,1967.0,233.0,411.0,0.9998373983739838,0.037073170731707315,0.6589994752492566,0.1455308728354032,0.009008221094979885,0.001049501486793773,4.3729228616407205e-05,0.5882893125765262,0.3306804267972713,1.0,
+s100k,T cell+NK cell,123000,19138.0,70677,19068.0,5.81759271049988,6.865836515309969,19138.0,1967.0,233.0,411.0,0.9998373983739838,0.037073170731707315,0.08097400851762242,0.6150657215218529,0.5262107899316609,0.12479307271106584,8.489324674222165e-05,0.22670741542510292,0.3087850361503742,1.0,
+s100k,T cell,123000,19138.0,53046,19185.0,4.550861516419711,4.989834510469957,19138.0,1967.0,233.0,411.0,0.9998373983739838,0.037073170731707315,0.08558609508728274,0.48900953889077403,0.41192549862383593,0.16368811974512687,9.425781397277834e-05,0.17384911209139237,0.23259058175922784,1.0,
+s100k,ALL,123000,19138.0,123000,19138.0,5.553674796747967,6.840616774654444,19138.0,1967.0,233.0,411.0,0.9998373983739838,0.037073170731707315,0.38674796747967477,0.3944146341463415,0.30478048780487804,0.09972357723577235,0.0026910569105691056,0.2885447154471545,0.3157967479674797,1.0,
+s100k,B cell,123000,19138.0,24584,20102.0,4.313293198828506,10.252239763103793,19138.0,1967.0,233.0,411.0,0.9998373983739838,0.037073170731707315,0.9547673283436381,0.04376830458835015,0.0026033192320208264,0.13708102831109664,0.013179303612105434,0.1664497233973316,0.3290758216726326,1.0,
+s100k,Naive CD4 T cell+Memory CD4 T cell+Treg,123000,19138.0,20421,18867.0,1.8197443807844866,2.101423535426926,19138.0,1967.0,233.0,411.0,0.9998373983739838,0.037073170731707315,0.0337887468782136,0.05376817981489643,0.049948582341707064,0.2895059007884041,0.0,0.014739728710641007,0.2057685715684834,1.0,
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+s150k,T cell+NK cell,123000,20524.0,67979,20452.0,5.959355094955795,6.7663850154648975,20524.0,1967.0,237.0,411.0,0.9995934959349594,0.03398373983739837,0.07961282160667264,0.617705467865076,0.5370334956383589,0.11871313199664603,0.00010297297694876359,0.24113329116344753,0.29787140146221625,1.0,
+s150k,T cell,123000,20524.0,51762,20614.0,4.721359298326958,4.934534160982376,20524.0,1967.0,237.0,411.0,0.9995934959349594,0.03398373983739837,0.08266682122020015,0.49982612727483483,0.4302577180170782,0.15289208299524748,0.00013523434179513928,0.1872995633862679,0.2247594760635215,1.0,
+s150k,ALL,123000,20524.0,123000,20524.0,5.6126910569105695,6.481837763141313,20524.0,1967.0,237.0,411.0,0.9995934959349594,0.03398373983739837,0.40291869918699186,0.3864146341463415,0.2997560975609756,0.09535772357723578,0.0024959349593495937,0.30660975609756097,0.30296747967479676,1.0,
+s150k,B cell,123000,20524.0,26415,21365.0,4.255990914253265,9.142569959616445,20524.0,1967.0,237.0,411.0,0.9995934959349594,0.03398373983739837,0.945409805035018,0.04399015710770396,0.0035207268597387846,0.13458262350936967,0.011281468862388793,0.18682566723452584,0.30361537005489303,1.0,
+s150k,Naive CD4 T cell+Memory CD4 T cell+Treg,123000,20524.0,19128,20509.5,1.8418548724383104,2.1210297749141382,20524.0,1967.0,237.0,411.0,0.9995934959349594,0.03398373983739837,0.03873902132998745,0.05128607277289837,0.06053952321204517,0.2721141781681305,0.0002613969050606441,0.021539104976997073,0.19317231283981598,1.0,
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+s162k,T cell+NK cell,123000,20606.0,72018,20466.5,5.950901163597989,6.721785370952839,20606.0,1967.0,236.0,411.0,0.9997560975609756,0.031788617886178865,0.07410647338165459,0.6148601738454276,0.5351301063622983,0.12291371601544059,0.00015273959287955788,0.2398289316559749,0.30599294620789247,1.0,
+s162k,T cell,123000,20606.0,55309,20605.0,4.755916758574553,4.947910053412914,20606.0,1967.0,236.0,411.0,0.9997560975609756,0.031788617886178865,0.0766240575674845,0.5002983239617422,0.4308159612359652,0.15682800267587554,0.00018080240105588602,0.18689544197146937,0.23319893688188179,1.0,
+s162k,ALL,123000,20606.0,123000,20606.0,5.602520325203252,6.720105643511196,20606.0,1967.0,236.0,411.0,0.9997560975609756,0.031788617886178865,0.375130081300813,0.3985040650406504,0.3156747967479675,0.10120325203252033,0.0025609756097560977,0.2952276422764228,0.3104959349593496,1.0,
+s162k,B cell,123000,20606.0,26655,21460.0,4.328381166760458,10.064607837188944,20606.0,1967.0,236.0,411.0,0.9997560975609756,0.031788617886178865,0.9409866816732321,0.040255111611329955,0.0027011817670230726,0.1313449634214969,0.011404989682986307,0.19163383980491466,0.32474207465766275,1.0,
+s162k,Naive CD4 T cell+Memory CD4 T cell+Treg,123000,20606.0,20606,20458.0,1.8742113947393964,2.111211807353703,20606.0,1967.0,236.0,411.0,0.9997560975609756,0.031788617886178865,0.033000097059108995,0.05396486460254295,0.05896340871590799,0.27535669222556536,0.00024264777249344852,0.020964767543433953,0.20421236533048626,1.0,
+own5,Monocyte,123000,1786.0,21211,2317.0,8.166517373061147,3.2288246160951393,,,,,,,0.6223186082692942,0.3104049785488662,0.02508132572721701,0.025411343170996182,0.00018858139644524068,0.5728631370515299,0.6137381547310358,0.821,2822.1680876979294
+own5,T cell+NK cell,123000,1786.0,76200,1744.0,4.163818897637795,4.916011888440289,,,,,,,0.0907742782152231,0.3680708661417323,0.300748031496063,0.3403674540682415,0.00045931758530183726,0.12954068241469816,0.31916010498687664,0.929,1877.2874058127018
+own5,T cell,123000,1786.0,71032,1811.0,3.7707934452077936,4.345129868917703,,,,,,,0.08960750084468971,0.3236991778353418,0.2643738033562338,0.363103953147877,0.0004927356684311297,0.11282238990877351,0.29979445883545447,0.914,1981.4004376367614
+own5,ALL,123000,1786.0,123000,1786.0,4.945552845528455,5.453630838578801,,,,,,,0.3403333333333333,0.2887479674796748,0.19219512195121952,0.26671544715447154,0.0025691056910569104,0.21459349593495936,0.3804308943089431,0.908,1966.9603524229074
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+own5,Naive CD4 T cell+Memory CD4 T cell+Treg,123000,1786.0,33233,2147.0,2.106640989378028,2.307784602199686,,,,,,,0.044383594619805615,0.04907772394908675,0.04667047813919899,0.48921252971444046,0.0003610868714831643,0.013420395390124275,0.2892606746306382,0.949,2262.381454162276
+own58,Monocyte,123000,1882.0,22723,2321.0,8.172336399243058,3.0974528809908453,,,,,,,0.6505302996963429,0.3019407648637944,0.037935131804779296,0.028561369537473045,0.00013202482066628526,0.5561765611935043,0.5790168551687718,0.823,2820.1701093560146
+own58,T cell+NK cell,123000,1882.0,75578,1878.0,4.9774405250205085,5.414240333878278,,,,,,,0.09914260763714308,0.43320807642435627,0.3724496546614094,0.3522453624070497,0.000846807271957448,0.14035830532694699,0.3542432983143243,1.0,
+own58,T cell,123000,1882.0,67850,1973.0,4.348931466470154,4.4605676522917905,,,,,,,0.09574060427413413,0.37014001473839353,0.3150773765659543,0.3896978629329403,0.0009432571849668386,0.11313190862196021,0.3245983787767133,0.996,1980.9236947791164
+own58,ALL,123000,1882.0,123000,1882.0,5.549349593495935,5.927992733346031,,,,,,,0.34370731707317076,0.3293252032520325,0.23779674796747968,0.26999186991869917,0.002861788617886179,0.22026829268292683,0.3971219512195122,0.957,1966.5621734587253
+own58,B cell,123000,1882.0,19896,1805.0,4.766686771210294,10.660178409498302,,,,,,,0.9487334137515079,0.019400884599919583,0.008896260554885405,0.2855850422195416,0.01407318053880177,0.15621230398069963,0.40787092882991555,0.934,1932.5481798715202
+own58,Naive CD4 T cell+Memory CD4 T cell+Treg,123000,1882.0,30246,2342.0,2.397936917278318,2.349258217515994,,,,,,,0.045857303445083646,0.05928056602525954,0.06096673940355749,0.5374264365535939,0.0005951200158698671,0.01229914699464392,0.3128016927858229,1.0,

paper-releases/pbisc-diffusion/updates/20261005T142225Z-rare-states-scratch-vs-pretrained/diffusion/dataset/server_1/model8/plans/rare_states_screen_20261004/out/scratch_vs_lora_20261005/verify_recompute_cross_extra_contrast_compression.csv

@@ -0,0 +1,15 @@
+scratch_variant,comparator,n_kept_scratch,n_kept_comp,n_kept_both,median_kept_scratch,median_kept_comp,ratio_comp_over_scratch,ratio_ci_lo,ratio_ci_hi,frac_boot_ratio_gt1,median_bothkept_scratch,median_bothkept_comp,ratio_bothkept_comp_over_scratch,ratio_bothkept_ci_lo,ratio_bothkept_ci_hi,frac_boot_bothkept_ratio_gt1,n_boot_finite
+own,r16,14,11,10,0.04162180704324611,0.1370210621168871,3.2920498135633265,1.2244620115111327,11.762610142135228,0.988,0.05947398779847998,0.1378205319074918,2.3173245482458498,1.076641174344868,5.391301956104854,0.98,2000
+own,r64,14,10,10,0.04162180704324611,0.1311033420693776,3.149871458804225,0.9988397227647826,9.664051868098266,0.9745,0.05947398779847998,0.1311033420693776,2.204381224840758,0.8662835685391214,4.89931806584096,0.956,2000
+own,full20k,14,15,12,0.04162180704324611,0.28995936891090063,6.966525230623108,2.5153754141080715,13.279615234420191,0.999,0.04917237212774718,0.2884537439508871,5.866175078995574,2.327433052285902,9.491673794400292,0.9985,2000
+own,full108k,14,16,13,0.04162180704324611,0.14951970796554165,3.592340616306901,1.8778275164043876,9.432692724025188,0.997,0.04181338194332443,0.2551094304857982,6.101143189794692,2.1520272955861905,8.904003633062246,0.999,2000
+own,xcal,14,19,14,0.04162180704324611,0.2289066926346549,5.499681750886381,3.262320853479544,13.397891694834676,1.0,0.04162180704324611,0.4014579429393046,9.645375140060104,3.3277182961715357,12.085660929102653,1.0,2000
+own,zs,14,15,13,0.04162180704324611,0.09180813975877354,2.2057701546543274,0.8922639824365305,5.831777481884014,0.958,0.0414302321431678,0.09180813975877354,2.215969716064299,0.9756170335982535,5.6751560711540145,0.9665,2000
+own,own58,14,19,14,0.04162180704324611,0.34401827255426903,8.265337259307971,3.153490745701419,13.744501554557697,0.9995,0.04162180704324611,0.3071354737328872,7.379196040521875,3.021482405118602,12.715753729754725,0.9995,2000
+depth_r16,r16,14,11,10,0.06708791018958343,0.1370210621168871,2.0424106479048145,0.7597191431501608,7.113777369135903,0.9255,0.10715249799823193,0.1378205319074918,1.2862092296697172,0.6607764965397317,3.224984076177008,0.8335,2000
+depth_r16,r64,14,10,10,0.06708791018958343,0.1311033420693776,1.9542022057162496,0.5836116702462942,6.2196094086897835,0.8135,0.10715249799823193,0.1311033420693776,1.2235210986079006,0.519430213267531,3.0394312140308792,0.692,2000
+depth_r16,full20k,14,15,12,0.06708791018958343,0.28995936891090063,4.3220808054909705,1.5210175857699322,8.355172684752452,0.993,0.08323197573478741,0.2884537439508871,3.4656601793284807,1.3079271523537228,5.572174370051818,0.994,2000
+depth_r16,full108k,14,16,13,0.06708791018958343,0.14951970796554165,2.228713154769832,1.1450165227655207,5.881600489709313,0.984,0.07179820765043482,0.2551094304857982,3.553144832359241,1.1824136727286865,5.1895053572350545,0.9905,2000
+depth_r16,xcal,14,19,14,0.06708791018958343,0.2289066926346549,3.412040887662002,1.9997458002507142,8.928029677856628,0.997,0.06708791018958343,0.4014579429393046,5.984057959248192,2.101729825596876,8.202147295510938,1.0,2000
+depth_r16,zs,14,15,13,0.06708791018958343,0.09180813975877354,1.3684751768140238,0.5517961961395943,3.678161137157425,0.6885,0.062377612728732046,0.09180813975877354,1.4718123336657505,0.6271169421713022,3.777895143856735,0.7155,2000
+depth_r16,own58,14,19,14,0.06708791018958343,0.34401827255426903,5.127872840011103,1.8374587550657102,9.30268698196953,0.995,0.06708791018958343,0.3071354737328872,4.578104652014862,1.7804959126342055,8.581278420544237,0.997,2000

paper-releases/pbisc-diffusion/updates/20261005T142225Z-rare-states-scratch-vs-pretrained/diffusion/dataset/server_1/model8/plans/rare_states_screen_20261004/out/scratch_vs_lora_20261005/verify_recompute_cross_extra_contrast_pairs.csv

@@ -0,0 +1,22 @@
+pair,s162k_frac,r16_frac,r64_frac,full108k_frac,full20k_frac,xcal_frac,own58_frac,s162k_at_r16depth_frac
+C1Q-high monocyte (reference)|adult,0.0414302321431678,-0.04210891460603901,0.000540282025870474,-0.042869141470246855,-0.023932239522283412,0.03499583236778145,0.31208080177469283,0.04554331531843964
+C1Q-high monocyte (reference)|all,0.011742102941510202,-0.012776554367804687,-0.011481198208908248,0.02147069708072984,-0.004263489441966642,0.01909037372401975,0.30219014569108155,0.013136078888421436
+C1Q-high monocyte (reference)|paediatric,-0.01421037384774147,-0.00551704828809602,-0.03527825328449162,0.10571563402450875,-0.01612245896565627,0.01505788590889289,0.34401827255426903,-0.016208412055664354
+Cycling monocyte (Ye 2026)|adult,0.05653136231216994,0.1386200016980965,0.1786204577342268,0.27948583206795063,0.34124107680810567,0.41696367437987514,0.29847912180700736,0.11963925217732388
+Cycling monocyte (Ye 2026)|all,0.034096441338400674,0.10540803144904813,0.06893559530586975,0.1600521554159316,0.1931451351641756,0.2289066926346549,0.15964680371528095,0.062377612728732046
+Cycling monocyte (Ye 2026)|paediatric,0.01681386498815493,0.08133445751224172,-0.0027032841833070057,0.053657013524213946,0.07455306367505621,0.11593454591621291,0.14196584516353775,0.02857901008001057
+Cytotoxic CD4 T|adult,-1.7564891852569187,-0.7227869641403047,-0.49423057477412824,-1.935236308724101,0.38299898603187443,1.2550509541515853,2.4808750505863184,-2.095457686631057
+Cytotoxic CD4 T|all,-1.1904803365418062,-0.8149777984216775,-1.0687007192294198,-2.020850312265345,-0.4482160630665143,0.04798597050848521,0.9822210789487748,-1.349799014467329
+Granulocyte-like (LDG)|adult,0.021060285440839557,-0.025541694521458658,-0.00022592902469489124,0.0046129000410659714,0.013881502103293548,0.10258315107646727,0.03805937809205648,0.02723040159725758
+Granulocyte-like (LDG)|all,0.0241202850434678,-0.018531179905526725,-0.021810232579616916,0.0010658529577573387,0.002717244117898046,0.14655706093438284,0.18124102943408285,0.0277540712870792
+Granulocyte-like (LDG)|paediatric,-0.006443456387088114,0.004669205733301684,-0.035955368541714994,0.010357554442644704,0.004804556691492999,0.08323507949524703,0.13642006538698442,-0.01167301433325421
+ISG-high T|adult,0.669687553460278,2.0648993853027178,2.404745440868567,2.341993572409008,1.6507563443393405,2.0804475839035534,0.2651704052096851,1.01819771199794
+ISG-high T|all,-0.24269344306127366,-0.1530579722640015,-0.03390755846417905,0.13898726051515173,0.28995936891090063,0.10063407399185229,0.5591364479230369,-0.2238800994791257
+ISG-high T|paediatric,0.19830380806207584,0.5684331835290275,0.5958909181352268,0.6238098678207459,0.7373950579108448,0.8200438982570712,0.4964061452920167,0.22047306721250354
+MS1 monocyte (IL1R2+)|adult,0.06241661328479002,0.09857436882233162,0.08358622640452838,0.2551094304857982,0.24250397648554772,0.5049622574223027,0.6214690098803446,0.09466574381913999
+MS1 monocyte (IL1R2+)|all,0.03395189412606866,0.1370210621168871,0.08349820526907849,0.33041807604319856,0.33440351141622643,0.5914851644774068,0.8255082252444848,0.05130101051710685
+MS1 monocyte (IL1R2+)|paediatric,0.04181338194332443,0.06977315936155148,0.050193042806979754,0.11992304300513633,0.16974287765282392,0.38595221149873404,0.6657647735807559,0.07179820765043482
+Plasmablast (label)|adult,0.7284105052974954,1.7615294891820998,1.1217266795406884,2.939990592560137,2.670342712973637,1.2194713797848098,0.8418793529721927,0.7284105052974954
+Plasmablast (markers)|adult,0.4122490655533709,1.289574421032507,1.013839183037826,2.2937794484372986,2.161954438064096,0.8487488618641862,0.5444426259130923,0.5591444029998386
+Plasmablast (markers)|paediatric,-1.6668413815049736,-2.162493160622338,-2.352976417736756,-4.26281263517481,-3.206463009819239,-1.2841879427725447,-1.797939627617739,-1.1725961377875354
+Proliferating T (label)|all,-0.2862612017364984,-1.0808869468728404,-0.7673635988290648,-1.889615412960015,-1.465632735902476,-1.1843439199171455,-0.6558770362719802,-0.2862612017364984

paper-releases/pbisc-diffusion/updates/20261005T142225Z-rare-states-scratch-vs-pretrained/diffusion/dataset/server_1/model8/plans/rare_states_screen_20261004/out/scratch_vs_lora_20261005/verify_recompute_cross_extra_depth_factors.csv

@@ -0,0 +1,16 @@
+state,depth_r16,depth_r64,depth_full20k,depth_full108k,is_label
+C1Q-high monocyte (reference),1.1579665643125217,1.1711525189786063,1.2005659709939867,1.1790863296856,False
+Cycling T/NK,1.3169710806697121,1.4225236333744364,1.31148162182645,1.3631350925561252,False
+Cycling activated T (CD38/HLA-DR),1.4443352174981576,1.5713903743315518,1.4212817412333745,1.4878481012658227,False
+Cycling monocyte (Ye 2026),1.817858553931251,1.8741344195519347,2.042166000887703,1.9186822351959947,False
+Cytotoxic CD4 T,1.1407528641571192,1.2149912841371293,1.0845435684647302,1.1438730853391683,False
+DN2 / ABC B,1.4956612287400213,1.7431229773462793,1.5859403754140604,1.6746987951807237,False
+Granulocyte-like (LDG),1.8031694126525006,2.088723776223782,1.9267571562962018,1.981617138908086,False
+HSPC,1.121028744326778,1.1632653061224492,1.1417565485362096,1.1435185185185186,False
+ISG-high T,1.6708365910867864,1.9036166043114195,1.6322945310113044,1.7716796551152376,False
+ISG-high monocyte (positive control),2.013658628485305,2.1167442321021883,2.319301291092547,2.1525526130299064,False
+MS1 monocyte (IL1R2+),1.5644176908285263,1.61700656757691,1.7362902477498372,1.6398212251336428,False
+Plasmablast (label),1.0,1.0,1.0,1.0,True
+Plasmablast (markers),1.5662805662805666,1.7068723702664796,1.6387562737177135,1.6570120064364402,False
+Platelet signal in monocytes (negative control),2.1137084352632054,2.225624880747948,2.460345918582577,2.2397273425499225,False
+Proliferating T (label),1.0,1.0,1.0,1.0,True