Archive 4 checkpoints (1-4)
Browse files- paper-releases/pbisc-diffusion/updates/20261015T121654Z-x1-nine-core40-deck/diffusion/dataset/server_1/model8/presentations/2026-09-30--paper-summary--r00/data/x1_priority_20261015/builds/20261015T120743086141Z/sources/3bfd21f7a518adfd/summary.json +2155 -0
- paper-releases/pbisc-diffusion/updates/20261015T121654Z-x1-nine-core40-deck/diffusion/dataset/server_1/model8/presentations/2026-09-30--paper-summary--r00/data/x1_priority_20261015/builds/20261015T120743086141Z/sources/4cadfc2cfe62d4c6/headline.csv +6 -0
- paper-releases/pbisc-diffusion/updates/20261015T121654Z-x1-nine-core40-deck/diffusion/dataset/server_1/model8/presentations/2026-09-30--paper-summary--r00/data/x1_priority_20261015/builds/20261015T120743086141Z/sources/9c7da02aada4a852/manifest.json +624 -0
- paper-releases/pbisc-diffusion/updates/20261015T121654Z-x1-nine-core40-deck/diffusion/dataset/server_1/model8/presentations/2026-09-30--paper-summary--r00/data/x1_priority_20261015/builds/20261015T120743086141Z/sources/a1a4a6070a5d7d4b/status.json +18 -0
paper-releases/pbisc-diffusion/updates/20261015T121654Z-x1-nine-core40-deck/diffusion/dataset/server_1/model8/presentations/2026-09-30--paper-summary--r00/data/x1_priority_20261015/builds/20261015T120743086141Z/sources/3bfd21f7a518adfd/summary.json
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|
| 1 |
+
{
|
| 2 |
+
"schema": "paired_ft_scores.v1",
|
| 3 |
+
"dataset": "imperial_eskd",
|
| 4 |
+
"written_utc": "2026-10-14T11:55:49.511530+00:00",
|
| 5 |
+
"command": [
|
| 6 |
+
"/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/tools/score_ft.py",
|
| 7 |
+
"--dataset",
|
| 8 |
+
"imperial_eskd",
|
| 9 |
+
"--out",
|
| 10 |
+
"/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/scores/imperial_eskd/disease/draw3/score",
|
| 11 |
+
"--donors",
|
| 12 |
+
"/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/scores/imperial_eskd/disease/draw3/test_sample_ids.txt",
|
| 13 |
+
"--threads",
|
| 14 |
+
"4",
|
| 15 |
+
"--arm",
|
| 16 |
+
"lora=/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/generated/imperial_eskd/disease/draw3/lora.npz",
|
| 17 |
+
"--arm",
|
| 18 |
+
"pairedcal=/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/generated/imperial_eskd/disease/draw3/pairedcal.npz",
|
| 19 |
+
"--arm",
|
| 20 |
+
"scsemi=/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/generated/imperial_eskd/disease/draw3/scsemi.npz",
|
| 21 |
+
"--arm",
|
| 22 |
+
"raw=/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/generated/global/imperial_eskd/raw.npz",
|
| 23 |
+
"--arm",
|
| 24 |
+
"refcal=/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/generated/global/imperial_eskd/refcal.npz",
|
| 25 |
+
"--case-groups",
|
| 26 |
+
"covid_positive",
|
| 27 |
+
"--control-groups",
|
| 28 |
+
"covid_negative"
|
| 29 |
+
],
|
| 30 |
+
"arms": [
|
| 31 |
+
"lora",
|
| 32 |
+
"pairedcal",
|
| 33 |
+
"scsemi",
|
| 34 |
+
"raw",
|
| 35 |
+
"refcal"
|
| 36 |
+
],
|
| 37 |
+
"donors": [
|
| 38 |
+
"C20_1004",
|
| 39 |
+
"C20_1404",
|
| 40 |
+
"C21_1004",
|
| 41 |
+
"C21_1704",
|
| 42 |
+
"C21_2504",
|
| 43 |
+
"C23_2204",
|
| 44 |
+
"C33_1401",
|
| 45 |
+
"C33_1601",
|
| 46 |
+
"C33_1901",
|
| 47 |
+
"C34_1404",
|
| 48 |
+
"C34_2104",
|
| 49 |
+
"C34_2504",
|
| 50 |
+
"C36_1504",
|
| 51 |
+
"C36_1704",
|
| 52 |
+
"C36_2104",
|
| 53 |
+
"C42_1504",
|
| 54 |
+
"C42_2204",
|
| 55 |
+
"C42_2704",
|
| 56 |
+
"C58_1604",
|
| 57 |
+
"C58_2501",
|
| 58 |
+
"C58_2901",
|
| 59 |
+
"C58_0102",
|
| 60 |
+
"C58_0402",
|
| 61 |
+
"C58_1003",
|
| 62 |
+
"C60_2504",
|
| 63 |
+
"C63_1704",
|
| 64 |
+
"C63_2404",
|
| 65 |
+
"C63_2904",
|
| 66 |
+
"C65_1704",
|
| 67 |
+
"C65_2104",
|
| 68 |
+
"C65_2504",
|
| 69 |
+
"C69_1804",
|
| 70 |
+
"C82_2504",
|
| 71 |
+
"C85_2004",
|
| 72 |
+
"C93_2104",
|
| 73 |
+
"C93_2704",
|
| 74 |
+
"C93_0405",
|
| 75 |
+
"C101_0601",
|
| 76 |
+
"C101_1101",
|
| 77 |
+
"C101_1301",
|
| 78 |
+
"C101_1801",
|
| 79 |
+
"C101_2001",
|
| 80 |
+
"C101_2502",
|
| 81 |
+
"C103_2204",
|
| 82 |
+
"C104_2204",
|
| 83 |
+
"C106_2204",
|
| 84 |
+
"C113_0605",
|
| 85 |
+
"C123_2404",
|
| 86 |
+
"C123_2904",
|
| 87 |
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"C123_0505",
|
| 88 |
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"C124_2404",
|
| 89 |
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"C124_2704",
|
| 90 |
+
"C124_0105",
|
| 91 |
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"C126_2504",
|
| 92 |
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"C126_3004",
|
| 93 |
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"C126_0605",
|
| 94 |
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"C127_2504",
|
| 95 |
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"C127_0405",
|
| 96 |
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"C127_1105",
|
| 97 |
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"C128_2504",
|
| 98 |
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"C128_0405",
|
| 99 |
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"C128_1105",
|
| 100 |
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"C132_2804",
|
| 101 |
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"C132_0205",
|
| 102 |
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"C132_1105",
|
| 103 |
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"C137_3004",
|
| 104 |
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"C137_2502",
|
| 105 |
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"C138_3004",
|
| 106 |
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"C138_2301",
|
| 107 |
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"C138_3001",
|
| 108 |
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"C138_0202",
|
| 109 |
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"C138_0402",
|
| 110 |
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"C140_3004",
|
| 111 |
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"C140_2801",
|
| 112 |
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"C140_3001",
|
| 113 |
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"C140_0202",
|
| 114 |
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"C140_0402",
|
| 115 |
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"C140_0602",
|
| 116 |
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"C140_0902",
|
| 117 |
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"C140_1103",
|
| 118 |
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"C141_2001",
|
| 119 |
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"C141_2201",
|
| 120 |
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"C141_3001",
|
| 121 |
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"C141_0202",
|
| 122 |
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"C142_3004",
|
| 123 |
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"C145_3004",
|
| 124 |
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"C145_0701",
|
| 125 |
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"C145_1201",
|
| 126 |
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"C145_1401",
|
| 127 |
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"C145_1901",
|
| 128 |
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"C145_2301",
|
| 129 |
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"C146_3004",
|
| 130 |
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"C146_1201",
|
| 131 |
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"C146_1401",
|
| 132 |
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"C146_1601",
|
| 133 |
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"C146_1901",
|
| 134 |
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"C146_2301",
|
| 135 |
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"C146_2701",
|
| 136 |
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"C146_2502",
|
| 137 |
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"C147_3004",
|
| 138 |
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"C147_1401",
|
| 139 |
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"C147_1901",
|
| 140 |
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"C152_0405",
|
| 141 |
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"C161_1105",
|
| 142 |
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"C164_1105",
|
| 143 |
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"C167_1205",
|
| 144 |
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"C168_1205",
|
| 145 |
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"C168_2001",
|
| 146 |
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"C168_2301",
|
| 147 |
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"C168_3001",
|
| 148 |
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"C168_0202",
|
| 149 |
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"C168_0403",
|
| 150 |
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"C169_1205",
|
| 151 |
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"C169_2001",
|
| 152 |
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"C169_2301",
|
| 153 |
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"C169_0202",
|
| 154 |
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"C169_0403",
|
| 155 |
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"C170_1205",
|
| 156 |
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"C170_2301",
|
| 157 |
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"C170_0202",
|
| 158 |
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"C170_0402",
|
| 159 |
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"C170_0403",
|
| 160 |
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"C187_2605",
|
| 161 |
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"C187_1201",
|
| 162 |
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"C187_1401",
|
| 163 |
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"C187_1901",
|
| 164 |
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"C187_2301",
|
| 165 |
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"C187_2502",
|
| 166 |
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"C190_2605",
|
| 167 |
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"C190_2901",
|
| 168 |
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"C190_0102",
|
| 169 |
+
"C190_0302",
|
| 170 |
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"C190_0502",
|
| 171 |
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"C190_0802",
|
| 172 |
+
"C190_1002",
|
| 173 |
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"C190_0903",
|
| 174 |
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"C193_2605",
|
| 175 |
+
"C195_2605",
|
| 176 |
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"C197_2605",
|
| 177 |
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"C212_2705",
|
| 178 |
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"C214_2705",
|
| 179 |
+
"C234_2805",
|
| 180 |
+
"C237_2805",
|
| 181 |
+
"C238_2905",
|
| 182 |
+
"C246_2905"
|
| 183 |
+
],
|
| 184 |
+
"n_donors": 145,
|
| 185 |
+
"reference": {
|
| 186 |
+
"cache": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scoring_cache/imperial_eskd",
|
| 187 |
+
"reference_sha256": "34b4caa3f8a60b46d5faf58f09cdaa5622bcce19e4c45d9902a711fead96375e",
|
| 188 |
+
"features_sha256": "e46e5bb1a24eae045efe75125d20e3accaa8f68a1006eb2f60d24159013d4aa7",
|
| 189 |
+
"n_r1_cells": 21682,
|
| 190 |
+
"pca": {
|
| 191 |
+
"n_components": 50,
|
| 192 |
+
"explained_variance_ratio_sum": 0.258540540933609,
|
| 193 |
+
"n_fit_cells": 21682
|
| 194 |
+
},
|
| 195 |
+
"r2_control": {
|
| 196 |
+
"precision": 0.9691449128309196,
|
| 197 |
+
"coverage": 0.9997693939673462,
|
| 198 |
+
"density": 1.2893321649294345,
|
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paper-releases/pbisc-diffusion/updates/20261015T121654Z-x1-nine-core40-deck/diffusion/dataset/server_1/model8/presentations/2026-09-30--paper-summary--r00/data/x1_priority_20261015/builds/20261015T120743086141Z/sources/4cadfc2cfe62d4c6/headline.csv
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paper-releases/pbisc-diffusion/updates/20261015T121654Z-x1-nine-core40-deck/diffusion/dataset/server_1/model8/presentations/2026-09-30--paper-summary--r00/data/x1_priority_20261015/builds/20261015T120743086141Z/sources/9c7da02aada4a852/manifest.json
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|
| 1 |
+
{
|
| 2 |
+
"schema": "paired_ft_contrast_extra.v1",
|
| 3 |
+
"dataset": "imperial_eskd",
|
| 4 |
+
"design": "scored",
|
| 5 |
+
"unit": "strict",
|
| 6 |
+
"written_utc": "2026-10-13T06:05:31.738036+00:00",
|
| 7 |
+
"command": [
|
| 8 |
+
"/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/tools/score_strict.py",
|
| 9 |
+
"--support-manifest",
|
| 10 |
+
"/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/protocol/splits/imperial_eskd/disease/draw1/support.json",
|
| 11 |
+
"--out",
|
| 12 |
+
"/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/scores/imperial_eskd/disease/draw1",
|
| 13 |
+
"--action",
|
| 14 |
+
"all",
|
| 15 |
+
"--threads",
|
| 16 |
+
"4",
|
| 17 |
+
"--arm",
|
| 18 |
+
"lora=/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/generated/imperial_eskd/disease/draw1/lora.npz",
|
| 19 |
+
"--arm",
|
| 20 |
+
"pairedcal=/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/generated/imperial_eskd/disease/draw1/pairedcal.npz",
|
| 21 |
+
"--arm",
|
| 22 |
+
"scsemi=/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/generated/imperial_eskd/disease/draw1/scsemi.npz",
|
| 23 |
+
"--arm",
|
| 24 |
+
"raw=/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/generated/global/imperial_eskd/raw.npz",
|
| 25 |
+
"--arm",
|
| 26 |
+
"refcal=/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/generated/global/imperial_eskd/refcal.npz"
|
| 27 |
+
],
|
| 28 |
+
"threads": 4,
|
| 29 |
+
"donors": [
|
| 30 |
+
"C20_1004",
|
| 31 |
+
"C20_1404",
|
| 32 |
+
"C21_1004",
|
| 33 |
+
"C21_1704",
|
| 34 |
+
"C21_2504",
|
| 35 |
+
"C23_2204",
|
| 36 |
+
"C33_1401",
|
| 37 |
+
"C33_1601",
|
| 38 |
+
"C33_1901",
|
| 39 |
+
"C34_1404",
|
| 40 |
+
"C34_2104",
|
| 41 |
+
"C34_2504",
|
| 42 |
+
"C36_1504",
|
| 43 |
+
"C36_1704",
|
| 44 |
+
"C36_2104",
|
| 45 |
+
"C40_1504",
|
| 46 |
+
"C40_2204",
|
| 47 |
+
"C40_0105",
|
| 48 |
+
"C42_1504",
|
| 49 |
+
"C42_2204",
|
| 50 |
+
"C42_2704",
|
| 51 |
+
"C58_1604",
|
| 52 |
+
"C58_2501",
|
| 53 |
+
"C58_2901",
|
| 54 |
+
"C58_0102",
|
| 55 |
+
"C58_0402",
|
| 56 |
+
"C58_1003",
|
| 57 |
+
"C60_2504",
|
| 58 |
+
"C63_1704",
|
| 59 |
+
"C63_2404",
|
| 60 |
+
"C63_2904",
|
| 61 |
+
"C69_1804",
|
| 62 |
+
"C82_2504",
|
| 63 |
+
"C85_2004",
|
| 64 |
+
"C93_2104",
|
| 65 |
+
"C93_2704",
|
| 66 |
+
"C93_0405",
|
| 67 |
+
"C103_2204",
|
| 68 |
+
"C104_2204",
|
| 69 |
+
"C106_2204",
|
| 70 |
+
"C108_2204",
|
| 71 |
+
"C108_1501",
|
| 72 |
+
"C108_1801",
|
| 73 |
+
"C108_2201",
|
| 74 |
+
"C113_0605",
|
| 75 |
+
"C123_2404",
|
| 76 |
+
"C123_2904",
|
| 77 |
+
"C123_0505",
|
| 78 |
+
"C124_2404",
|
| 79 |
+
"C124_2704",
|
| 80 |
+
"C124_0105",
|
| 81 |
+
"C126_2504",
|
| 82 |
+
"C126_3004",
|
| 83 |
+
"C126_0605",
|
| 84 |
+
"C127_2504",
|
| 85 |
+
"C127_0405",
|
| 86 |
+
"C127_1105",
|
| 87 |
+
"C128_2504",
|
| 88 |
+
"C128_0405",
|
| 89 |
+
"C128_1105",
|
| 90 |
+
"C132_2804",
|
| 91 |
+
"C132_0205",
|
| 92 |
+
"C132_1105",
|
| 93 |
+
"C137_3004",
|
| 94 |
+
"C137_2502",
|
| 95 |
+
"C138_3004",
|
| 96 |
+
"C138_2301",
|
| 97 |
+
"C138_3001",
|
| 98 |
+
"C138_0202",
|
| 99 |
+
"C138_0402",
|
| 100 |
+
"C140_3004",
|
| 101 |
+
"C140_2801",
|
| 102 |
+
"C140_3001",
|
| 103 |
+
"C140_0202",
|
| 104 |
+
"C140_0402",
|
| 105 |
+
"C140_0602",
|
| 106 |
+
"C140_0902",
|
| 107 |
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