Archive 4 checkpoints (1-4)

paper-releases/pbisc-diffusion/updates/20261006T033847Z-bulkonly-lora5-k4000/diffusion/dataset/server_1/model8/plans/bulkonly_lora5_k4000_20261006/logs/ye2026_sepsis-d1-pack.log

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+{"file": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/bulkonly_lora5_k4000_20261006/share/ye2026_sepsis/lora5k4_bulkonly_ye2026_sepsis_draw1.h5ad", "cells": 488000, "samples": 122, "nnz": 153973296, "bytes": 348736764}

paper-releases/pbisc-diffusion/updates/20261006T033847Z-bulkonly-lora5-k4000/diffusion/dataset/server_1/model8/plans/bulkonly_lora5_k4000_20261006/logs/ye2026_sepsis-d1-pgen.log

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+{"dataset": "ye2026_sepsis", "draw": 1, "cells": 115500, "samples": 77, "seconds": 17.9}

paper-releases/pbisc-diffusion/updates/20261006T033847Z-bulkonly-lora5-k4000/diffusion/dataset/server_1/model8/plans/bulkonly_lora5_k4000_20261006/logs/ye2026_sepsis-d1-score.log

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+08:33:41 ye2026_sepsis: 77 scored donors, 2 arm(s); fitting the observed reference
+08:33:45 reference: R1 11550 cells, PCA var 0.334, R2 control P/C 0.9817/0.9996; contrast on
+08:33:45 observed top-50 DEG lists: T 50 (sig 1521, 57+20 donors, 283471 cells), B 50 (sig 1053, 57+20 donors, 95857 cells), Mono 50 (sig 2310, 57+20 donors, 101105 cells), NK 50 (sig 1105, 57+20 donors, 45427 cells), DC 50 (sig 1650, 53+20 donors, 3055 cells)
+08:33:45 lora5: loading generated_counts (115500 cells in the NPZ, 115500 scored)
+08:33:58 lora5: Poisson read-out nnz 34238414 (whole NPZ), median library 1881; annotating
+08:34:09 lora5: L1 0.4726 (null 0.5253466396705578) P/C 0.9158/0.6619 pb r 0.8837 top1 0.143 mono 34.5% (24.0 s)
+08:34:09 lora5: top-50 DEG 16/250 (T 10, B 0, Mono 5, NK 0, DC 1); broadcast 20 (0.33 s)
+08:34:09 lora5_k4000: loading generated_counts (115500 cells in the NPZ, 115500 scored)
+08:34:23 lora5_k4000: Poisson read-out nnz 35113190 (whole NPZ), median library 2038; annotating
+08:34:34 lora5_k4000: L1 0.4676 (null 0.5253466396705578) P/C 0.9319/0.6810 pb r 0.8809 top1 0.143 mono 34.9% (25.3 s)
+08:34:34 lora5_k4000: top-50 DEG 16/250 (T 8, B 0, Mono 6, NK 1, DC 1); broadcast 20 (0.4 s)
+             comp_l1  comp_l1_obs_loo_null  precision  coverage  precision_dm  coverage_dm  pb_r_median  pb_top1  mono_pct_gen  mono_pct_obs  median_umi_gen  median_umi_obs  contrast_mean_cp10k_r_gen  contrast_pseudobulk_log1p_cpm_r_gen  contrast_mean_cp10k_r_broadcast  contrast_pseudobulk_log1p_cpm_r_broadcast  deg_top50_T  deg_top50_B  deg_top50_Mono  deg_top50_NK  deg_top50_DC  deg_top50_sum  deg_top50_max  deg_top50_sum_4type  deg_top50_sum_broadcast  seconds
+lora5         0.4726                0.5253     0.9158    0.6619        0.9192       0.8177       0.8837   0.1429       34.4771       20.3122          1881.0          1955.0                     0.0812                               0.1030                           0.2794                                     0.2472         10.0          0.0             5.0           0.0           1.0           16.0          250.0                 15.0                     20.0     24.0
+lora5_k4000   0.4676                0.5253     0.9319    0.6810        0.9360       0.8376       0.8809   0.1429       34.8745       20.3122          2038.0          1955.0                     0.1399                               0.1363                           0.2794                                     0.2472          8.0          0.0             6.0           1.0           1.0           16.0          250.0                 15.0                     20.0     25.3
+08:34:34 done in 58.3 s -> /home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/bulkonly_lora5_k4000_20261006/scores/ye2026_sepsis/draw1
+{"lora5": {"comp_l1": 0.4726, "coverage": 0.6619, "pb_r_median": 0.8837, "contrast_mean_cp10k_r_gen": 0.0812, "deg_top50_sum": 16}, "lora5_k4000": {"comp_l1": 0.4676, "coverage": 0.681, "pb_r_median": 0.8809, "contrast_mean_cp10k_r_gen": 0.1399, "deg_top50_sum": 16}}

paper-releases/pbisc-diffusion/updates/20261006T033847Z-bulkonly-lora5-k4000/diffusion/dataset/server_1/model8/plans/bulkonly_lora5_k4000_20261006/logs/ye2026_sepsis-d2-annot.log

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+{"dataset": "ye2026_sepsis", "draw": 2, "cells": 488000, "samples": 122, "seconds": 73.5, "labels_l1": {"T cell": 337898, "B cell": 69909, "Monocyte": 46051, "NK cell": 17979, "Other": 15335, "DC": 828}}