Archive 4 checkpoints (1-4)

paper-releases/pbisc-diffusion/updates/20261004T051658Z-behcet-c1q-lora3/diffusion/dataset/server_1/model8/plans/behcet_c1q_lora3_20261004/out/rules_groups/per_arm/obs_thin_lora3/rule_A/group.csv

@@ -0,0 +1,25 @@
+cohort,group,metric,mean_delta,median_delta,signed_fraction_positive,signed_cliffs_vs_zero,wilcoxon_p,n,statistic,module,is_primary,sd_delta,sem_delta,iqr_delta,min_delta,max_delta,ci95_lo,ci95_hi
+obs_thin_lora3,BD,ifng_response_log2fc_bgcorr_high_vs_other,0.17632113886765188,0.18699516331497668,1.0,1.0,0.125,4,pseudobulk_log2fc_bgcorr_high_vs_other,ifng_response,True,0.05011999821453126,0.02505999910726563,0.05436754884792924,0.10870802498678865,0.2225862038538656,0.09656903729832136,0.25607324043698243
+obs_thin_lora3,BD,ifng_response_log2fc_high_vs_other,-0.10209629312412723,-0.10965748275267763,0.0,-1.0,0.125,4,pseudobulk_log2fc_high_vs_other,ifng_response,False,0.05353765996944799,0.026768829984723994,0.0420662115898843,-0.15889051882344604,-0.030179688167707597,-0.18728665720577983,-0.01690592904247462
+obs_thin_lora3,BD,ifng_response_c1q_high_minus_other,0.0848555563930423,0.0882929789361919,1.0,1.0,0.125,4,mean_log1p_cp10k_high_minus_other,ifng_response,False,0.01903929041680534,0.00951964520840267,0.014400396513202449,0.05870259643333142,0.10413367126645401,0.054559796671949476,0.11515131611413514
+obs_thin_lora3,BD,proinflammatory_log2fc_bgcorr_high_vs_other,-0.08104804614767275,-0.06276197772440255,0.0,-1.0,0.125,4,pseudobulk_log2fc_bgcorr_high_vs_other,proinflammatory,True,0.06981134621728194,0.03490567310864097,0.04228894454672883,-0.18082408957452406,-0.017844139567361847,-0.19213347656570806,0.03003738427036258
+obs_thin_lora3,BD,proinflammatory_log2fc_high_vs_other,-0.32454958164776326,-0.3021245339674651,0.0,-1.0,0.125,4,pseudobulk_log2fc_high_vs_other,proinflammatory,False,0.10171887377282605,0.05085943688641303,0.06789268115630209,-0.4673403639507439,-0.22660889470537898,-0.4864070086557383,-0.1626921546397882
+obs_thin_lora3,BD,proinflammatory_c1q_high_minus_other,0.012633338054613148,0.014612400579021648,0.75,0.5,0.25,4,mean_log1p_cp10k_high_minus_other,proinflammatory,False,0.0111414812519599,0.00557074062597995,0.009283955223875033,-0.0025823186739818704,0.023890869734391168,-0.005095244868230594,0.03036192097745689
+obs_thin_lora3,BD,phagocytosis_antigen_log2fc_bgcorr_high_vs_other,0.16938458973576537,0.17139316307421362,1.0,1.0,0.125,4,pseudobulk_log2fc_bgcorr_high_vs_other,phagocytosis_antigen,True,0.0401529731029931,0.02007648655149655,0.029694743876283347,0.11840393140325453,0.21634810139137978,0.10549224928687712,0.23327693018465362
+obs_thin_lora3,BD,phagocytosis_antigen_log2fc_high_vs_other,-0.08350977855341396,-0.08207336124757328,0.0,-1.0,0.125,4,pseudobulk_log2fc_high_vs_other,phagocytosis_antigen,False,0.04307442357613244,0.02153721178806622,0.05830153440391786,-0.13234750601719214,-0.03754488570131712,-0.15205079863445803,-0.014968758472369906
+obs_thin_lora3,BD,phagocytosis_antigen_c1q_high_minus_other,0.09026491359223233,0.09069527619093781,1.0,1.0,0.125,4,mean_log1p_cp10k_high_minus_other,phagocytosis_antigen,False,0.010642895995735997,0.005321447997867998,0.008574025054593495,0.0768895287131619,0.10277957327389181,0.07332969107265794,0.10720013611180673
+obs_thin_lora3,BD,phagocytosis_antigen_mhcii_fcgr_log2fc_bgcorr_high_vs_other,0.9006095097581508,0.7826083938287701,1.0,1.0,0.125,4,pseudobulk_log2fc_bgcorr_high_vs_other,phagocytosis_antigen_mhcii_fcgr,True,0.34416493368082457,0.17208246684041228,0.20954732327769376,0.631685909153915,1.405535342221148,0.35296629895777454,1.4482527205585272
+obs_thin_lora3,BD,phagocytosis_antigen_mhcii_fcgr_log2fc_high_vs_other,0.744576715183314,0.6512268647775601,1.0,1.0,0.125,4,pseudobulk_log2fc_high_vs_other,phagocytosis_antigen_mhcii_fcgr,False,0.36106146228786384,0.18053073114393192,0.22144572669713136,0.41594183302325005,1.259911298154886,0.17004735686414152,1.3191060735024864
+obs_thin_lora3,BD,phagocytosis_antigen_mhcii_fcgr_c1q_high_minus_other,0.5495479988811671,0.5194806491727021,1.0,1.0,0.125,4,mean_log1p_cp10k_high_minus_other,phagocytosis_antigen_mhcii_fcgr,False,0.1039064103497568,0.0519532051748784,0.09734569404269233,0.46249057182765574,0.6967401253516088,0.38420971302472895,0.7148862847376053
+obs_thin_lora3,HC,ifng_response_log2fc_bgcorr_high_vs_other,0.1541804804286107,0.07017895870777058,0.75,0.5,0.25,4,pseudobulk_log2fc_bgcorr_high_vs_other,ifng_response,True,0.22489000597822154,0.11244500298911077,0.16926943362478064,-0.008418010215829124,0.4847820145147308,-0.2036697038817003,0.5120306647389217
+obs_thin_lora3,HC,ifng_response_log2fc_high_vs_other,-0.2977246276263882,-0.29753323876081655,0.0,-1.0,0.125,4,pseudobulk_log2fc_high_vs_other,ifng_response,False,0.15184495132288836,0.07592247566144418,0.19825762938186836,-0.46786160595013765,-0.12797042703378206,-0.5393438297831434,-0.05610542546963293
+obs_thin_lora3,HC,ifng_response_c1q_high_minus_other,0.10220213443858538,0.10816737220117081,1.0,1.0,0.125,4,mean_log1p_cp10k_high_minus_other,ifng_response,False,0.04064380017460742,0.02032190008730371,0.047724178573501294,0.0500027756745291,0.14247101767747078,0.03752877858940103,0.1668754902877697
+obs_thin_lora3,HC,proinflammatory_log2fc_bgcorr_high_vs_other,-0.21112162189343886,-0.2363869834776423,0.25,-0.5,0.25,4,pseudobulk_log2fc_bgcorr_high_vs_other,proinflammatory,True,0.19109768374175437,0.09554884187087719,0.22670956324941682,-0.40338332827154394,0.03167080765307303,-0.5152006806795493,0.0929574368926715
+obs_thin_lora3,HC,proinflammatory_log2fc_high_vs_other,-0.6270630364164843,-0.6377003127522258,0.0,-1.0,0.125,4,pseudobulk_log2fc_high_vs_other,proinflammatory,False,0.20412526553173646,0.10206263276586823,0.26565108128973747,-0.8446033000990921,-0.3882482200623937,-0.9518718849697496,-0.30225418786321906
+obs_thin_lora3,HC,proinflammatory_c1q_high_minus_other,0.027136641814968762,0.02771386134251272,0.75,0.5,0.25,4,mean_log1p_cp10k_high_minus_other,proinflammatory,False,0.030225076319139836,0.015112538159569918,0.036557452387506364,-0.008167005845657244,0.061285850420506854,-0.02095819941441357,0.0752314830443511
+obs_thin_lora3,HC,phagocytosis_antigen_log2fc_bgcorr_high_vs_other,0.07925846403048017,0.10156380832550244,0.75,0.5,0.25,4,pseudobulk_log2fc_bgcorr_high_vs_other,phagocytosis_antigen,True,0.09797267181781372,0.04898633590890686,0.0928374658790447,-0.05627087165518526,0.1701771111261011,-0.07663791969220707,0.23515484775316742
+obs_thin_lora3,HC,phagocytosis_antigen_log2fc_high_vs_other,-0.32996080647042003,-0.3167819103074281,0.0,-1.0,0.125,4,pseudobulk_log2fc_high_vs_other,phagocytosis_antigen,False,0.28576809601044995,0.14288404800522497,0.40022209288003574,-0.6518082360522474,-0.034471169214576554,-0.7846816171286282,0.1247600041877881
+obs_thin_lora3,HC,phagocytosis_antigen_c1q_high_minus_other,0.11725172761039535,0.11789873785300703,1.0,1.0,0.125,4,mean_log1p_cp10k_high_minus_other,phagocytosis_antigen,False,0.023191444774357396,0.011595722387178698,0.03746159699554527,0.09427592164802756,0.13893351308753976,0.08034896374222292,0.15415449147856777
+obs_thin_lora3,HC,phagocytosis_antigen_mhcii_fcgr_log2fc_bgcorr_high_vs_other,0.6513576973921814,0.6754868604744177,1.0,1.0,0.125,4,pseudobulk_log2fc_bgcorr_high_vs_other,phagocytosis_antigen_mhcii_fcgr,True,0.21906392033171995,0.10953196016585998,0.20034220461294672,0.3651514398028701,0.88930562881702,0.30277811545185807,0.9999372793325048
+obs_thin_lora3,HC,phagocytosis_antigen_mhcii_fcgr_log2fc_high_vs_other,0.40721669794089144,0.36346636516781206,1.0,1.0,0.125,4,pseudobulk_log2fc_high_vs_other,phagocytosis_antigen_mhcii_fcgr,False,0.31648543727996287,0.15824271863998143,0.353698392906511,0.0857145185076163,0.8162195429203253,-0.09638225733296679,0.9108156532147497
+obs_thin_lora3,HC,phagocytosis_antigen_mhcii_fcgr_c1q_high_minus_other,0.5272217091959353,0.5224900404081334,1.0,1.0,0.125,4,mean_log1p_cp10k_high_minus_other,phagocytosis_antigen_mhcii_fcgr,False,0.05943127665377537,0.029715638326887686,0.09190364257896833,0.47249536618060173,0.5914113897868725,0.4326532857933846,0.6217901325984859

paper-releases/pbisc-diffusion/updates/20261004T051658Z-behcet-c1q-lora3/diffusion/dataset/server_1/model8/plans/behcet_c1q_lora3_20261004/out/rules_groups/per_arm/obs_thin_lora3/rule_A/sample.csv

@@ -0,0 +1,9 @@
+cohort,sample_id,group,source,n_monocytes,n_c1q_high,c1q_high_fraction,ifng_response_mean_c1q_high,ifng_response_mean_other,ifng_response_c1q_high_minus_other,proinflammatory_mean_c1q_high,proinflammatory_mean_other,proinflammatory_c1q_high_minus_other,phagocytosis_antigen_mean_c1q_high,phagocytosis_antigen_mean_other,phagocytosis_antigen_c1q_high_minus_other,ifng_response_log2fc_bgcorr_high_vs_other,proinflammatory_log2fc_bgcorr_high_vs_other,phagocytosis_antigen_log2fc_bgcorr_high_vs_other,phagocytosis_antigen_mhcii_fcgr_log2fc_bgcorr_high_vs_other,ifng_response_log2fc_high_vs_other,proinflammatory_log2fc_high_vs_other,phagocytosis_antigen_log2fc_high_vs_other,phagocytosis_antigen_mhcii_fcgr_log2fc_high_vs_other,phagocytosis_antigen_mhcii_fcgr_mean_c1q_high,phagocytosis_antigen_mhcii_fcgr_mean_other,phagocytosis_antigen_mhcii_fcgr_c1q_high_minus_other,background_log2fc_all_genes
+obs_thin_lora3,PBMC_BD_1,BD,real,489,51,0.10429447852760736,0.4069554015768773,0.3166340041040709,0.09032139747280643,0.25642607358339903,0.24359077841889856,0.012835295164500465,0.6392095969862379,0.5499153300715741,0.0892942669146638,0.2225862038538656,-0.18082408957452406,0.17486563066038166,0.631685909153915,-0.11624981870331076,-0.4673403639507439,-0.13234750601719214,0.41594183302325005,1.9776590648475683,1.5151684930199125,0.46249057182765574,-0.3100248777274517
+obs_thin_lora3,PBMC_BD_2,BD,real,946,81,0.08562367864693446,0.4121959752688124,0.32593141486923505,0.08626456039957736,0.2305591028429662,0.21416959684942338,0.01638950599354283,0.6465185266402759,0.554422241173064,0.09209628546721182,0.10870802498678865,-0.06173267302777703,0.11840393140325453,0.7933317038360271,-0.15889051882344604,-0.30726440986410564,-0.10514061413087268,0.6442579578347452,1.9481090497198785,1.4027728634393737,0.5453361862805048,-0.260078571301379
+obs_thin_lora3,PBMC_BD_3,BD,real,735,61,0.08299319727891157,0.404092619144574,0.3453900227112426,0.05870259643333142,0.24894119072370988,0.25152350939769175,-0.0025823186739818704,0.6140566642378006,0.5371671355246387,0.0768895287131619,0.16972982722753668,-0.06379128242102806,0.16792069548804558,0.7718850838215131,-0.030179688167707597,-0.22660889470537898,-0.03754488570131712,0.6581957717203751,1.8034342885518364,1.309809176486937,0.49362511206489934,-0.23782760605009107
+obs_thin_lora3,PBMC_BD_4,BD,real,1402,64,0.0456490727532097,0.3970787450617742,0.2929450737953202,0.10413367126645401,0.23652714390493562,0.21263627417054445,0.023890869734391168,0.5915623698621386,0.4887827965882468,0.10277957327389181,0.2042604994024167,-0.017844139567361847,0.21634810139137978,1.405535342221148,-0.1030651468020445,-0.2969846580708245,-0.05900610836427388,1.259911298154886,1.9676726486405747,1.2709325232889659,0.6967401253516088,-0.33592752301774936
+obs_thin_lora3,PBMC_HC_1,HC,real,272,29,0.10661764705882353,0.4655728983465834,0.3231018806691126,0.14247101767747078,0.2972046208181492,0.23591877039764234,0.061285850420506854,0.7158916733467359,0.580461469403284,0.13543020394345184,0.039532673746343464,-0.31501766965648403,0.07741349486968703,0.3651514398028701,-0.22201001565896356,-0.5366587718985172,-0.15285669286034936,0.2494182739655896,1.804925741632328,1.3324303754517264,0.47249536618060173,-0.24299964174797942
+obs_thin_lora3,PBMC_HC_2,HC,real,743,29,0.039030955585464336,0.3803237293556538,0.3303209536811247,0.0500027756745291,0.24964363812517185,0.2578106439708291,-0.008167005845657244,0.6160327814356197,0.5217568597875921,0.09427592164802756,-0.008418010215829124,-0.40338332827154394,-0.05627087165518526,0.7216892987140239,-0.46786160595013765,-0.8446033000990921,-0.4807071277545068,0.47751445637003453,1.8872572770022922,1.4062169943790925,0.48104028262319964,-0.46553354479519865
+obs_thin_lora3,PBMC_HC_3,HC,real,1306,102,0.0781010719754977,0.4149045966426203,0.3231419698232934,0.0917626268193269,0.22783672242783387,0.2129190199659647,0.014917702461869159,0.6452067586386405,0.5448394868760783,0.10036727176256222,0.10082524366919768,-0.15775629729880059,0.1701771111261011,0.88930562881702,-0.12797042703378206,-0.3882482200623937,-0.034471169214576554,0.8162195429203253,1.9895084818445108,1.4255686836514436,0.5639397981930672,-0.23926300721784252
+obs_thin_lora3,PBMC_HC_4,HC,real,473,21,0.04439746300211417,0.3888749266794306,0.26430280909641585,0.12457211758301473,0.2398650467570703,0.19935502653391401,0.04051002022315628,0.6385215748022463,0.4995880617147065,0.13893351308753976,0.4847820145147308,0.03167080765307303,0.12571412178131786,0.6292844222348116,-0.37305646186266955,-0.7387418536059344,-0.6518082360522474,0.0857145185076163,1.8302803908607435,1.238869001073871,0.5914113897868725,-0.7933160443785955

paper-releases/pbisc-diffusion/updates/20261004T051658Z-behcet-c1q-lora3/diffusion/dataset/server_1/model8/plans/behcet_c1q_lora3_20261004/out/rules_groups/per_arm/obs_thin_lora3/rule_B/group.csv

@@ -0,0 +1,25 @@
+cohort,group,metric,mean_delta,median_delta,signed_fraction_positive,signed_cliffs_vs_zero,wilcoxon_p,n,statistic,module,is_primary,sd_delta,sem_delta,iqr_delta,min_delta,max_delta,ci95_lo,ci95_hi
+obs_thin_lora3,BD,ifng_response_log2fc_bgcorr_high_vs_other,0.18074949669962698,0.18743253856007117,0.75,0.5,0.25,4,pseudobulk_log2fc_bgcorr_high_vs_other,ifng_response,True,0.17022006204763468,0.08511003102381734,0.24640100627326006,-0.006281806018560765,0.3544147156969263,-0.09010860707470225,0.4516076004739562
+obs_thin_lora3,BD,ifng_response_log2fc_high_vs_other,-0.4755439200628097,-0.46111113438439094,0.0,-1.0,0.125,4,pseudobulk_log2fc_high_vs_other,ifng_response,False,0.1440475937557336,0.0720237968778668,0.15114764446852075,-0.6595358374176673,-0.3204175740647898,-0.7047557863292812,-0.2463320537963383
+obs_thin_lora3,BD,ifng_response_c1q_high_minus_other,0.10815717443736202,0.10260053452958354,1.0,1.0,0.125,4,mean_log1p_cp10k_high_minus_other,ifng_response,False,0.019631566566466713,0.009815783283233357,0.02003586708283471,0.09181268513137986,0.13561494355890114,0.07691897119417043,0.1393953776805536
+obs_thin_lora3,BD,proinflammatory_log2fc_bgcorr_high_vs_other,-0.06532537931016257,-0.04118616898025332,0.25,-0.5,0.625,4,pseudobulk_log2fc_bgcorr_high_vs_other,proinflammatory,True,0.14266951986479653,0.07133475993239827,0.1085071517538088,-0.2601333576654261,0.08120417838528252,-0.2923444224953237,0.16169366387499856
+obs_thin_lora3,BD,proinflammatory_log2fc_high_vs_other,-0.6472436150876171,-0.6707139747931563,0.0,-1.0,0.125,4,pseudobulk_log2fc_high_vs_other,proinflammatory,False,0.14818047368858564,0.07409023684429282,0.14467038277127464,-0.7980221287382198,-0.44952438202593586,-0.8830318155903316,-0.41145541458490253
+obs_thin_lora3,BD,proinflammatory_c1q_high_minus_other,0.02272389323223923,0.021528498683590525,1.0,1.0,0.125,4,mean_log1p_cp10k_high_minus_other,proinflammatory,False,0.010255264317943904,0.005127632158971952,0.015593270914657682,0.013598278110425355,0.034240297451350515,0.006405479213065019,0.039042307251413444
+obs_thin_lora3,BD,phagocytosis_antigen_log2fc_bgcorr_high_vs_other,0.20868411671970627,0.19434844616131963,1.0,1.0,0.125,4,pseudobulk_log2fc_bgcorr_high_vs_other,phagocytosis_antigen,True,0.04306641565430553,0.021533207827152765,0.03245610258898651,0.17463915631533725,0.27140041824084854,0.14015583902927775,0.2772123944101348
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paper-releases/pbisc-diffusion/updates/20261004T051658Z-behcet-c1q-lora3/diffusion/dataset/server_1/model8/plans/behcet_c1q_lora3_20261004/out/rules_groups/per_arm/obs_thin_lora3/rule_B/sample.csv

@@ -0,0 +1,9 @@
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