Archive 4 checkpoints (1-4)
Browse files- paper-releases/pbisc-diffusion/updates/20261006T054909Z-fig1-corpus-panels/diffusion/dataset/server_1/manuscript/source_data/corpus/geo/GSE274680_series_matrix.txt.gz +3 -0
- paper-releases/pbisc-diffusion/updates/20261006T054909Z-fig1-corpus-panels/diffusion/dataset/server_1/manuscript/source_data/corpus/geo/GSE314010_series_matrix.txt.gz +3 -0
- paper-releases/pbisc-diffusion/updates/20261006T054909Z-fig1-corpus-panels/diffusion/metadata/inference_locations.json +5 -0
- paper-releases/pbisc-diffusion/updates/20261006T054909Z-fig1-corpus-panels/diffusion/metadata/request.json +115 -0
paper-releases/pbisc-diffusion/updates/20261006T054909Z-fig1-corpus-panels/diffusion/dataset/server_1/manuscript/source_data/corpus/geo/GSE274680_series_matrix.txt.gz
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paper-releases/pbisc-diffusion/updates/20261006T054909Z-fig1-corpus-panels/diffusion/dataset/server_1/manuscript/source_data/corpus/geo/GSE314010_series_matrix.txt.gz
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paper-releases/pbisc-diffusion/updates/20261006T054909Z-fig1-corpus-panels/diffusion/metadata/inference_locations.json
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paper-releases/pbisc-diffusion/updates/20261006T054909Z-fig1-corpus-panels/diffusion/metadata/request.json
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"source": "/home/sj_server_1/PBISC/paper-release-20260928/manuscript/scripts/corpus/build_corpus_tables.py",
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"state": "completed"
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"state": "completed"
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"source": "/home/sj_server_1/PBISC/paper-release-20260928/manuscript/source_data/corpus/README.md",
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"state": "completed"
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"host": "server_1",
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"kind": "table",
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"source": "/home/sj_server_1/PBISC/paper-release-20260928/manuscript/source_data/corpus/corpus_assay_condition.csv",
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"state": "completed"
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"source": "/home/sj_server_1/PBISC/paper-release-20260928/manuscript/source_data/corpus/corpus_cellgroups.csv",
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"state": "completed"
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"state": "completed"
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"kind": "metadata",
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"source": "/home/sj_server_1/PBISC/paper-release-20260928/manuscript/source_data/corpus/geo/GSE132802_series_matrix.txt.gz",
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"state": "completed"
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"kind": "metadata",
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"source": "/home/sj_server_1/PBISC/paper-release-20260928/manuscript/source_data/corpus/geo/GSE163121_series_matrix.txt.gz",
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"state": "completed"
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"source": "/home/sj_server_1/PBISC/paper-release-20260928/manuscript/source_data/corpus/geo/GSE314010_series_matrix.txt.gz",
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"state": "completed"
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}
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],
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"inference_locations": [],
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"project_id": "pbisc-diffusion",
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"summary": "Figure 1 corpus panels (new, 2026-10-06; style after Nicheformer Fig. 2): pretraining corpus overview (41,395,184 cells, 22 datasets, 3,169 donors, 6,507 samples; split, sample handling, assay and condition shares), per-dataset cells/donors/samples with condition and L1 composition, L1/L2 cell-type counts and the per-cell record schema. Aggregate source tables from a row-level join of the model_7 E2 corpus obs to the base block obs, completed with public GEO series matrices (GSE274680, GSE132802, GSE163121, GSE314010); no donor or sample identifiers. Split check found 7 donors with samples in more than one split (6 GSE274680 subjects, 1 GSE132802 patient). CPU only; no checkpoint or inference. Not yet placed in main.tex."
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}
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