junidude14 commited on
Commit
3637f4c
·
verified ·
1 Parent(s): 5ef2693

Archive 4 checkpoints (1-4)

Browse files
paper-releases/pbisc-diffusion/updates/20261006T054909Z-fig1-corpus-panels/diffusion/dataset/server_1/manuscript/source_data/corpus/geo/GSE274680_series_matrix.txt.gz ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:eca999bb52c01fcb573ca7a9696b3998c359e1a07c7fb2b8203af7a512cf3425
3
+ size 20294
paper-releases/pbisc-diffusion/updates/20261006T054909Z-fig1-corpus-panels/diffusion/dataset/server_1/manuscript/source_data/corpus/geo/GSE314010_series_matrix.txt.gz ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:b534bdf3ac0ad0dd04c811cbf0c7fc9994a579957d935c979ade9c41e265f922
3
+ size 2779
paper-releases/pbisc-diffusion/updates/20261006T054909Z-fig1-corpus-panels/diffusion/metadata/inference_locations.json ADDED
@@ -0,0 +1,5 @@
 
 
 
 
 
 
1
+ {
2
+ "locations": [],
3
+ "project_id": "pbisc-diffusion",
4
+ "update_id": "20261006T054909Z-fig1-corpus-panels"
5
+ }
paper-releases/pbisc-diffusion/updates/20261006T054909Z-fig1-corpus-panels/diffusion/metadata/request.json ADDED
@@ -0,0 +1,115 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ {
2
+ "assets": [
3
+ {
4
+ "host": "server_1",
5
+ "kind": "figure",
6
+ "source": "/home/sj_server_1/PBISC/paper-release-20260928/manuscript/figures/fig01_corpus.pdf",
7
+ "state": "completed"
8
+ },
9
+ {
10
+ "host": "server_1",
11
+ "kind": "figure",
12
+ "source": "/home/sj_server_1/PBISC/paper-release-20260928/manuscript/figures/fig01_corpus.png",
13
+ "state": "completed"
14
+ },
15
+ {
16
+ "host": "server_1",
17
+ "kind": "config",
18
+ "source": "/home/sj_server_1/PBISC/paper-release-20260928/manuscript/figures/fig01_corpus.provenance.json",
19
+ "state": "completed"
20
+ },
21
+ {
22
+ "host": "server_1",
23
+ "kind": "figure",
24
+ "source": "/home/sj_server_1/PBISC/paper-release-20260928/manuscript/figures/fig01_corpus.svg",
25
+ "state": "completed"
26
+ },
27
+ {
28
+ "host": "server_1",
29
+ "kind": "code",
30
+ "source": "/home/sj_server_1/PBISC/paper-release-20260928/manuscript/scripts/corpus/build_corpus_tables.py",
31
+ "state": "completed"
32
+ },
33
+ {
34
+ "host": "server_1",
35
+ "kind": "code",
36
+ "source": "/home/sj_server_1/PBISC/paper-release-20260928/manuscript/scripts/corpus/build_figure1_corpus.py",
37
+ "state": "completed"
38
+ },
39
+ {
40
+ "host": "server_1",
41
+ "kind": "document",
42
+ "source": "/home/sj_server_1/PBISC/paper-release-20260928/manuscript/source_data/corpus/README.md",
43
+ "state": "completed"
44
+ },
45
+ {
46
+ "host": "server_1",
47
+ "kind": "table",
48
+ "source": "/home/sj_server_1/PBISC/paper-release-20260928/manuscript/source_data/corpus/corpus_assay_condition.csv",
49
+ "state": "completed"
50
+ },
51
+ {
52
+ "host": "server_1",
53
+ "kind": "table",
54
+ "source": "/home/sj_server_1/PBISC/paper-release-20260928/manuscript/source_data/corpus/corpus_cellgroups.csv",
55
+ "state": "completed"
56
+ },
57
+ {
58
+ "host": "server_1",
59
+ "kind": "table",
60
+ "source": "/home/sj_server_1/PBISC/paper-release-20260928/manuscript/source_data/corpus/corpus_celltypes.csv",
61
+ "state": "completed"
62
+ },
63
+ {
64
+ "host": "server_1",
65
+ "kind": "table",
66
+ "source": "/home/sj_server_1/PBISC/paper-release-20260928/manuscript/source_data/corpus/corpus_datasets.csv",
67
+ "state": "completed"
68
+ },
69
+ {
70
+ "host": "server_1",
71
+ "kind": "table",
72
+ "source": "/home/sj_server_1/PBISC/paper-release-20260928/manuscript/source_data/corpus/corpus_samples.csv",
73
+ "state": "completed"
74
+ },
75
+ {
76
+ "host": "server_1",
77
+ "kind": "config",
78
+ "source": "/home/sj_server_1/PBISC/paper-release-20260928/manuscript/source_data/corpus/corpus_summary.json",
79
+ "state": "completed"
80
+ },
81
+ {
82
+ "host": "server_1",
83
+ "kind": "table",
84
+ "source": "/home/sj_server_1/PBISC/paper-release-20260928/manuscript/source_data/corpus/dataset_info.csv",
85
+ "state": "completed"
86
+ },
87
+ {
88
+ "host": "server_1",
89
+ "kind": "metadata",
90
+ "source": "/home/sj_server_1/PBISC/paper-release-20260928/manuscript/source_data/corpus/geo/GSE132802_series_matrix.txt.gz",
91
+ "state": "completed"
92
+ },
93
+ {
94
+ "host": "server_1",
95
+ "kind": "metadata",
96
+ "source": "/home/sj_server_1/PBISC/paper-release-20260928/manuscript/source_data/corpus/geo/GSE163121_series_matrix.txt.gz",
97
+ "state": "completed"
98
+ },
99
+ {
100
+ "host": "server_1",
101
+ "kind": "metadata",
102
+ "source": "/home/sj_server_1/PBISC/paper-release-20260928/manuscript/source_data/corpus/geo/GSE274680_series_matrix.txt.gz",
103
+ "state": "completed"
104
+ },
105
+ {
106
+ "host": "server_1",
107
+ "kind": "metadata",
108
+ "source": "/home/sj_server_1/PBISC/paper-release-20260928/manuscript/source_data/corpus/geo/GSE314010_series_matrix.txt.gz",
109
+ "state": "completed"
110
+ }
111
+ ],
112
+ "inference_locations": [],
113
+ "project_id": "pbisc-diffusion",
114
+ "summary": "Figure 1 corpus panels (new, 2026-10-06; style after Nicheformer Fig. 2): pretraining corpus overview (41,395,184 cells, 22 datasets, 3,169 donors, 6,507 samples; split, sample handling, assay and condition shares), per-dataset cells/donors/samples with condition and L1 composition, L1/L2 cell-type counts and the per-cell record schema. Aggregate source tables from a row-level join of the model_7 E2 corpus obs to the base block obs, completed with public GEO series matrices (GSE274680, GSE132802, GSE163121, GSE314010); no donor or sample identifiers. Split check found 7 donors with samples in more than one split (6 GSE274680 subjects, 1 GSE132802 patient). CPU only; no checkpoint or inference. Not yet placed in main.tex."
115
+ }