Archive 4 checkpoints (1-4)

paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/logs/split_immicro_fewshot3_full.log

@@ -0,0 +1,14 @@
+Traceback (most recent call last):
+  File "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/bayesprism_paired_20261006/tools/build_split.py", line 90, in <module>
+    sys.exit(main())
+             ^^^^^^
+  File "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/bayesprism_paired_20261006/tools/build_split.py", line 59, in main
+    gcols = np.asarray([gpos[g] for g in ag["gene_ids"].astype(str)], dtype=np.int64)
+                                         ~~^^^^^^^^^^^^
+  File "/home/sj_server_1/miniforge3/envs/cxg_corpus/lib/python3.11/site-packages/numpy/lib/_npyio_impl.py", line 257, in __getitem__
+    return format.read_array(
+           ^^^^^^^^^^^^^^^^^^
+  File "/home/sj_server_1/miniforge3/envs/cxg_corpus/lib/python3.11/site-packages/numpy/lib/_format_impl.py", line 833, in read_array
+    raise ValueError("Object arrays cannot be loaded when "
+ValueError: Object arrays cannot be loaded when allow_pickle=False
+{"dataset": "immicro", "kind": "fewshot", "idx": 3, "n_reference_samples": 5, "n_mixture_samples": 102, "reference_cells": 19603, "states": 27, "genes_kept": 14382, "types": ["B cell", "DC", "Monocyte", "NK cell", "Other", "T cell"]}

paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/logs/split_immicro_fewshot4.log

@@ -0,0 +1 @@
+{"dataset": "immicro", "kind": "fewshot", "idx": 4, "n_reference_samples": 5, "n_mixture_samples": 102, "reference_cells": 17201, "states": 28, "genes_kept": 5250, "types": ["B cell", "DC", "Monocyte", "NK cell", "Other", "T cell"]}

paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/logs/split_immicro_fewshot4_full.log

@@ -0,0 +1,14 @@
+Traceback (most recent call last):
+  File "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/bayesprism_paired_20261006/tools/build_split.py", line 90, in <module>
+    sys.exit(main())
+             ^^^^^^
+  File "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/bayesprism_paired_20261006/tools/build_split.py", line 59, in main
+    gcols = np.asarray([gpos[g] for g in ag["gene_ids"].astype(str)], dtype=np.int64)
+                                         ~~^^^^^^^^^^^^
+  File "/home/sj_server_1/miniforge3/envs/cxg_corpus/lib/python3.11/site-packages/numpy/lib/_npyio_impl.py", line 257, in __getitem__
+    return format.read_array(
+           ^^^^^^^^^^^^^^^^^^
+  File "/home/sj_server_1/miniforge3/envs/cxg_corpus/lib/python3.11/site-packages/numpy/lib/_format_impl.py", line 833, in read_array
+    raise ValueError("Object arrays cannot be loaded when "
+ValueError: Object arrays cannot be loaded when allow_pickle=False
+{"dataset": "immicro", "kind": "fewshot", "idx": 4, "n_reference_samples": 5, "n_mixture_samples": 102, "reference_cells": 17201, "states": 28, "genes_kept": 14228, "types": ["B cell", "DC", "Monocyte", "NK cell", "Other", "T cell"]}

paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/logs/split_imperial_eskd_cv0.log

@@ -0,0 +1,18 @@
+Traceback (most recent call last):
+  File "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/bayesprism_paired_20261006/tools/build_split.py", line 86, in <module>
+    sys.exit(main())
+             ^^^^^^
+  File "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/bayesprism_paired_20261006/tools/build_split.py", line 32, in main
+    sp_ = C.split_rows(ds, kind, idx)
+          ^^^^^^^^^^^^^^^^^^^^^^^^^^^
+  File "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/bayesprism_paired_20261006/tools/common.py", line 83, in split_rows
+    r = json.loads((FT / "runs" / ds / f"fold{idx}" / "real_lora" / "RUN.json").read_text())
+                   ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
+  File "/home/sj_server_1/miniforge3/envs/cxg_corpus/lib/python3.11/pathlib.py", line 1058, in read_text
+    with self.open(mode='r', encoding=encoding, errors=errors) as f:
+         ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
+  File "/home/sj_server_1/miniforge3/envs/cxg_corpus/lib/python3.11/pathlib.py", line 1044, in open
+    return io.open(self, mode, buffering, encoding, errors, newline)
+           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
+FileNotFoundError: [Errno 2] No such file or directory: '/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/runs/imperial_eskd/fold0/real_lora/RUN.json'
+{"dataset": "imperial_eskd", "kind": "cv", "idx": 0, "n_reference_samples": 110, "n_mixture_samples": 47, "reference_cells": 422434, "states": 29, "genes_kept": 5826, "types": ["B cell", "DC", "Monocyte", "NK cell", "Other", "T cell"]}