Archive 4 checkpoints (1-4)

.gitattributes

@@ -127,3 +127,4 @@ paper-releases/pbisc-diffusion/updates/20261012T091446Z-frontmatter-word-export/
 paper-releases/pbisc-diffusion/updates/20261012T104812Z-jh-introduction-edit/diffusion/dataset/server_1/manuscript/main.pdf filter=lfs diff=lfs merge=lfs -text
 paper-releases/pbisc-diffusion/updates/20261012T121201Z-abstract-pretraining-lora/diffusion/dataset/server_1/manuscript/main.pdf filter=lfs diff=lfs merge=lfs -text
 paper-releases/pbisc-diffusion/updates/20261012T122929Z-introduction-transitions-lora/diffusion/dataset/server_1/manuscript/main.pdf filter=lfs diff=lfs merge=lfs -text
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@@ -0,0 +1,42 @@
+{
+  "command": [
+    "/home/sj_server_1/miniforge3/envs/scanvi/bin/python",
+    "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/aifi_scanvi_rebuild_20260916/predict_scanvi.py",
+    "--model-dir",
+    "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/aifi_scanvi_rebuild_20260916/runs/aifi_scanvi_f01common_v1/scanvi_model",
+    "--query",
+    "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/work/ablation_composition_v1/selected_readout.h5ad",
+    "--out-dir",
+    "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/work/ablation_composition_v1/annotation",
+    "--method-name",
+    "ablation_pc_selected_readout",
+    "--dataset-id",
+    "004_A_GSE135779_SLE_PBMC",
+    "--split",
+    "primary_kmeans",
+    "--sample-id-col",
+    "sample_id",
+    "--batch-key-col",
+    "batch_key",
+    "--seed",
+    "20260916",
+    "--device",
+    "cpu",
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+    "2",
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+    "2048"
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+}