Archive 4 checkpoints (1-4)

paper-releases/pbisc-diffusion/updates/20261003T105229Z-deck-cross-cohort-loco-k1000/diffusion/dataset/server_1/model8/presentations/2026-09-30--paper-summary--r00/data/sec08_cross_cohort.csv

@@ -0,0 +1,31 @@
+cohort,arm,score_arm,steps,comp_l1,coverage,precision,logfc_r,source,source_disease
+immicro,zs,zs_K1000,,0.4457108278919341,0.1864797507788162,0.6705919003115265,,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_crosscohort_20261002/scores/immicro/zs_K1000/summary.json,
+immicro,xcal,xcalL_K1000,,0.17220690476643966,0.5724610591900312,0.901993769470405,,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_crosscohort_20261002/scores/immicro/xcalL_K1000/summary.json,
+immicro,lora16sat,locoL_lora16sat_s28500_K1000,28500.0,0.17491854684276595,0.45165109034267914,0.8407476635514018,,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_crosscohort_20261002/scores/immicro/locoL_lora16sat_s28500_K1000/summary.json,
+immicro,lora64sat,locoL_lora64sat_s39000_K1000,39000.0,0.19858024117626522,0.38174454828660437,0.8349532710280374,,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_crosscohort_20261002/scores/immicro/locoL_lora64sat_s39000_K1000/summary.json,
+immicro,fullsat,locoL_fullsat_s65000_K1000,65000.0,0.21255123747092092,0.34579439252336447,0.7041744548286605,,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_crosscohort_20261002/scores/immicro/locoL_fullsat_s65000_K1000/summary.json,
+immicro,own,real_lora__raw,,0.16172890350786212,0.7842990654205607,0.9241121495327103,,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/pooled/summary.json,
+ye2026_sepsis,zs,zs_K1000,,0.5094583598384997,0.07398373983739838,0.6169918699186991,-0.021848803748335324,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_crosscohort_20261002/scores/ye2026_sepsis/zs_K1000/summary.json,
+ye2026_sepsis,xcal,xcalL_K1000,,0.4438043638834868,0.4638211382113821,0.8960975609756098,0.09668769745340702,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_crosscohort_20261002/scores/ye2026_sepsis/xcalL_K1000/summary.json,
+ye2026_sepsis,lora16sat,locoL_lora16sat_s26750_K1000,26750.0,0.4913211548128607,0.3413821138211382,0.8611382113821138,0.10171004353585707,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_crosscohort_20261002/scores/ye2026_sepsis/locoL_lora16sat_s26750_K1000/summary.json,
+ye2026_sepsis,lora64sat,locoL_lora64sat_s59000_K1000,59000.0,0.5696031573329058,0.2891869918699187,0.828130081300813,0.2279128935245801,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_crosscohort_20261002/scores/ye2026_sepsis/locoL_lora64sat_s59000_K1000/summary.json,
+ye2026_sepsis,fullsat,locoL_fullsat_s108500_K1000,108500.0,0.5846173784329263,0.3456910569105691,0.8208130081300813,0.07297860484594258,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_crosscohort_20261002/scores/ye2026_sepsis/locoL_fullsat_s108500_K1000/summary.json,
+ye2026_sepsis,own,real_lora__raw,,0.3618246783833512,0.829349593495935,0.9256910569105691,0.5267612711229187,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled/summary.json,
+imperial_eskd,zs,zs_K1000,,0.8029956289662181,0.11315049825398177,0.4935695426283962,0.6419400899561818,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_crosscohort_20261002/scores/imperial_eskd/zs_K1000/summary.json,
+imperial_eskd,xcal,xcalL_K1000,,0.6511665403698953,0.6370411378928541,0.8453709224086534,0.6892227232868162,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_crosscohort_20261002/scores/imperial_eskd/xcalL_K1000/summary.json,
+imperial_eskd,lora16sat,locoL_lora16sat_s40000_K1000,40000.0,0.6354385520845358,0.6838003577208074,0.8195639213014224,0.49115540391304124,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_crosscohort_20261002/scores/imperial_eskd/locoL_lora16sat_s40000_K1000/summary.json,
+imperial_eskd,lora64sat,locoL_lora64sat_s69250_K1000,69250.0,0.5944384838913485,0.7228941316753258,0.8223319989779405,0.5804458634433078,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_crosscohort_20261002/scores/imperial_eskd/locoL_lora64sat_s69250_K1000/summary.json,
+imperial_eskd,fullsat,locoL_fullsat_s93000_K1000,93000.0,0.5795732789528253,0.6076143429009454,0.8022314964653777,0.45945747768103096,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_crosscohort_20261002/scores/imperial_eskd/locoL_fullsat_s93000_K1000/summary.json,
+imperial_eskd,own,real_lora__raw,,0.37638560875745664,0.8500127757431224,0.847457627118644,0.8187448084273437,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/imperial_eskd/pooled/summary.json,
+giroux2022,zs,zs_K1000,,0.33717201742780784,0.2927777777777778,0.9044444444444445,0.33988455976970655,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_crosscohort_20261002/scores/giroux2022/zs_K1000/summary.json,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_crosscohort_20261002/scores_nosex/giroux2022/zs_K1000/summary.json
+giroux2022,xcal,xcalL_K1000,,0.20217456364466954,0.8911111111111111,0.9880555555555556,0.23805572307713363,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_crosscohort_20261002/scores/giroux2022/xcalL_K1000/summary.json,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_crosscohort_20261002/scores_nosex/giroux2022/xcalL_K1000/summary.json
+giroux2022,lora16sat,locoL_lora16sat_s35750_K1000,35750.0,0.43086767828477845,0.8188888888888889,0.9947222222222222,0.299296791280024,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_crosscohort_20261002/scores/giroux2022/locoL_lora16sat_s35750_K1000/summary.json,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_crosscohort_20261002/scores_nosex/giroux2022/locoL_lora16sat_s35750_K1000/summary.json
+giroux2022,lora64sat,locoL_lora64sat_s69250_K1000,69250.0,0.4098228307587457,0.8086111111111111,0.9944444444444445,0.27821710171594927,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_crosscohort_20261002/scores/giroux2022/locoL_lora64sat_s69250_K1000/summary.json,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_crosscohort_20261002/scores_nosex/giroux2022/locoL_lora64sat_s69250_K1000/summary.json
+giroux2022,fullsat,locoL_fullsat_s120000_K1000,120000.0,0.46479005295114834,0.7755555555555556,0.9844444444444445,0.19614193186548523,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_crosscohort_20261002/scores/giroux2022/locoL_fullsat_s120000_K1000/summary.json,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_crosscohort_20261002/scores_nosex/giroux2022/locoL_fullsat_s120000_K1000/summary.json
+giroux2022,own,real_lora__raw,,0.2580442754044374,0.9280555555555555,0.9980555555555556,0.46094848304079133,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/giroux2022/pooled/summary.json,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores_nosex/giroux2022/pooled/summary.json
+ji2025_chili,zs,zs_K1000,,0.7246556382795132,0.05898989898989899,0.7212121212121212,0.07494970415326974,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_crosscohort_20261002/scores/ji2025_chili/zs_K1000/summary.json,
+ji2025_chili,xcal,xcalL_K1000,,0.5647530791873953,0.07111111111111111,0.6357575757575757,0.12672949998502117,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_crosscohort_20261002/scores/ji2025_chili/xcalL_K1000/summary.json,
+ji2025_chili,lora16sat,locoL_lora16sat_s40000_K1000,40000.0,0.7395379838267597,0.3387878787878788,0.9105050505050505,0.045342224880778284,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_crosscohort_20261002/scores/ji2025_chili/locoL_lora16sat_s40000_K1000/summary.json,
+ji2025_chili,lora64sat,locoL_lora64sat_s51750_K1000,51750.0,0.6199837283023538,0.39515151515151514,0.9470707070707071,0.16414840904557088,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_crosscohort_20261002/scores/ji2025_chili/locoL_lora64sat_s51750_K1000/summary.json,
+ji2025_chili,fullsat,locoL_fullsat_s86750_K1000,86750.0,1.0304931953192484,0.08121212121212121,0.5107070707070707,0.1386792074228318,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_crosscohort_20261002/scores/ji2025_chili/locoL_fullsat_s86750_K1000/summary.json,
+ji2025_chili,own,real_lora__raw,,0.5044992874562503,0.8569696969696969,0.9709090909090909,0.47928798340225065,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ji2025_chili/pooled/summary.json,

paper-releases/pbisc-diffusion/updates/20261003T105229Z-deck-cross-cohort-loco-k1000/diffusion/dataset/server_1/model8/presentations/2026-09-30--paper-summary--r00/data/sec08_cross_cohort_slide_text.json

@@ -0,0 +1,121 @@
+{
+ "section": "08-cross-cohort",
+ "scripts": [
+  "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/presentations/2026-09-30--paper-summary--r00/tools/sec08_cross_cohort.py"
+ ],
+ "generated_from": "tools/sec08_cross_cohort.py (rerun to refresh; do not edit by hand)",
+ "slides": [
+  {
+   "title": "Pairs from other cohorts do not transfer",
+   "layout": "full",
+   "figures": [
+    "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/presentations/2026-09-30--paper-summary--r00/figures/sec08_cross_cohort.png"
+   ],
+   "keywords": [
+    "Train on the other cohorts, test the held-out one",
+    "Calibration ties or beats them on composition in 4/5",
+    "Own-cohort pairs best on coverage 5/5, disease r 4/4"
+   ],
+   "footnote_short": "Leave-one-cohort-out, K = 1000; train on the other cohorts (+ Liu 2021), test the held-out one.",
+   "footnote": "Each held-out cohort is scored on all its usable samples against the same frozen reference as its within-cohort benchmark. Zero-shot = base model on real bulk. Calibration from other cohorts = gene-wise alpha (mean pseudobulk CPM / mean bulk CPM) fitted on the training cohorts' pairs, cohort-balanced; 0 target pairs. LoRA r16 / r64 / full fine-tune = trained on the other PBMC cohorts' pairs plus Liu 2021 (training only: its cells are in the pretraining corpus; 44 pairs after excluding 14 hashtag-negative-heavy rows), cohort-balanced batches, inner-validation on 10 % of each training cohort's donors, step-saturation protocol (20k-step blocks, stop when a block lowers the inner-validation loss by < 1 % of the total), value at the last milestone (number in the bar = steps). Ji's bulk is whole blood and is never trained on. Own-cohort LoRA = LoRA r16 on the cohort's own pairs, 5-fold pooled. Giroux's logFC r excludes 196 sex-linked genes. Best on composition among zero-target-pair arms: ImMicro Calibration from other cohorts, Sepsis Calibration from other cohorts, Imperial Full fine-tune, other cohorts, Giroux Calibration from other cohorts, Ji (whole blood) Calibration from other cohorts.",
+   "numbers": [
+    {
+     "value": "ImMicro: L1 zs 0.446 / xcal 0.172 / lora16sat 0.175 / lora64sat 0.199 / fullsat 0.213 / own 0.162; coverage zs 0.19 / xcal 0.57 / lora16sat 0.45 / lora64sat 0.38 / fullsat 0.35 / own 0.78",
+     "source": "data/sec08_cross_cohort.csv"
+    },
+    {
+     "value": "Sepsis: L1 zs 0.509 / xcal 0.444 / lora16sat 0.491 / lora64sat 0.570 / fullsat 0.585 / own 0.362; coverage zs 0.07 / xcal 0.46 / lora16sat 0.34 / lora64sat 0.29 / fullsat 0.35 / own 0.83; logFC r zs -0.02 / xcal 0.10 / lora16sat 0.10 / lora64sat 0.23 / fullsat 0.07 / own 0.53",
+     "source": "data/sec08_cross_cohort.csv"
+    },
+    {
+     "value": "Imperial: L1 zs 0.803 / xcal 0.651 / lora16sat 0.635 / lora64sat 0.594 / fullsat 0.580 / own 0.376; coverage zs 0.11 / xcal 0.64 / lora16sat 0.68 / lora64sat 0.72 / fullsat 0.61 / own 0.85; logFC r zs 0.64 / xcal 0.69 / lora16sat 0.49 / lora64sat 0.58 / fullsat 0.46 / own 0.82",
+     "source": "data/sec08_cross_cohort.csv"
+    },
+    {
+     "value": "Giroux: L1 zs 0.337 / xcal 0.202 / lora16sat 0.431 / lora64sat 0.410 / fullsat 0.465 / own 0.258; coverage zs 0.29 / xcal 0.89 / lora16sat 0.82 / lora64sat 0.81 / fullsat 0.78 / own 0.93; logFC r zs 0.34 / xcal 0.24 / lora16sat 0.30 / lora64sat 0.28 / fullsat 0.20 / own 0.46",
+     "source": "data/sec08_cross_cohort.csv"
+    },
+    {
+     "value": "Ji (whole blood): L1 zs 0.725 / xcal 0.565 / lora16sat 0.740 / lora64sat 0.620 / fullsat 1.030 / own 0.504; coverage zs 0.06 / xcal 0.07 / lora16sat 0.34 / lora64sat 0.40 / fullsat 0.08 / own 0.86; logFC r zs 0.07 / xcal 0.13 / lora16sat 0.05 / lora64sat 0.16 / fullsat 0.14 / own 0.48",
+     "source": "data/sec08_cross_cohort.csv"
+    }
+   ]
+  },
+  {
+   "title": "Longer training on other cohorts: no gain",
+   "layout": "full",
+   "figures": [
+    "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/presentations/2026-09-30--paper-summary--r00/figures/sec08_cross_cohort_steps.png"
+   ],
+   "keywords": [
+    "Saturation: r16 by 40k, r64 by 69k, full by 120k steps",
+    "Full fine-tune drifts away (Ji L1 0.84 → 1.03)",
+    "So PBISC fits LoRA on a few pairs per cohort"
+   ],
+   "footnote_short": "Test metrics at every 20k-step milestone (best inner-validation state so far). K = 1000.",
+   "footnote": "Same runs as the previous slide. Each point = the milestone checkpoint at the end of a 20k-step block (or at the early stop), sampled and scored on the held-out cohort. Dashed = calibration from other cohorts; dotted = LoRA on the cohort's own pairs. Training stopped (steps): LoRA r16 ImMicro 28k, Sepsis 26k, Imperial 40k, Giroux 35k, Ji 40k; LoRA r64 ImMicro 39k, Sepsis 59k, Imperial 69k, Giroux 69k, Ji 51k; Full fine-tune ImMicro 65k, Sepsis 108k, Imperial 93k, Giroux 120k, Ji 86k.",
+   "numbers": [
+    {
+     "value": "ImMicro LoRA r16: 20k L1 0.163 cov 0.45, 28k L1 0.175 cov 0.45",
+     "source": "data/sec08_cross_cohort_steps.csv"
+    },
+    {
+     "value": "ImMicro LoRA r64: 20k L1 0.196 cov 0.44, 39k L1 0.199 cov 0.38",
+     "source": "data/sec08_cross_cohort_steps.csv"
+    },
+    {
+     "value": "ImMicro Full fine-tune: 20k L1 0.208 cov 0.39, 40k L1 0.211 cov 0.37, 60k L1 0.223 cov 0.35, 65k L1 0.213 cov 0.35",
+     "source": "data/sec08_cross_cohort_steps.csv"
+    },
+    {
+     "value": "Sepsis LoRA r16: 20k L1 0.500 cov 0.35, 26k L1 0.491 cov 0.34",
+     "source": "data/sec08_cross_cohort_steps.csv"
+    },
+    {
+     "value": "Sepsis LoRA r64: 20k L1 0.550 cov 0.29, 40k L1 0.564 cov 0.29, 59k L1 0.570 cov 0.29",
+     "source": "data/sec08_cross_cohort_steps.csv"
+    },
+    {
+     "value": "Sepsis Full fine-tune: 20k L1 0.498 cov 0.33, 40k L1 0.530 cov 0.33, 60k L1 0.546 cov 0.34, 80k L1 0.576 cov 0.34, 100k L1 0.577 cov 0.35, 108k L1 0.585 cov 0.35",
+     "source": "data/sec08_cross_cohort_steps.csv"
+    },
+    {
+     "value": "Imperial LoRA r16: 20k L1 0.657 cov 0.68, 40k L1 0.635 cov 0.68",
+     "source": "data/sec08_cross_cohort_steps.csv"
+    },
+    {
+     "value": "Imperial LoRA r64: 20k L1 0.622 cov 0.68, 40k L1 0.603 cov 0.71, 60k L1 0.577 cov 0.72, 69k L1 0.594 cov 0.72",
+     "source": "data/sec08_cross_cohort_steps.csv"
+    },
+    {
+     "value": "Imperial Full fine-tune: 20k L1 0.632 cov 0.60, 40k L1 0.609 cov 0.60, 60k L1 0.565 cov 0.61, 80k L1 0.576 cov 0.60, 93k L1 0.580 cov 0.61",
+     "source": "data/sec08_cross_cohort_steps.csv"
+    },
+    {
+     "value": "Giroux LoRA r16: 20k L1 0.416 cov 0.79, 35k L1 0.431 cov 0.82",
+     "source": "data/sec08_cross_cohort_steps.csv"
+    },
+    {
+     "value": "Giroux LoRA r64: 20k L1 0.491 cov 0.80, 40k L1 0.469 cov 0.82, 60k L1 0.430 cov 0.82, 69k L1 0.410 cov 0.81",
+     "source": "data/sec08_cross_cohort_steps.csv"
+    },
+    {
+     "value": "Giroux Full fine-tune: 20k L1 0.543 cov 0.75, 40k L1 0.532 cov 0.75, 60k L1 0.499 cov 0.76, 80k L1 0.466 cov 0.76, 100k L1 0.490 cov 0.76, 120k L1 0.465 cov 0.78",
+     "source": "data/sec08_cross_cohort_steps.csv"
+    },
+    {
+     "value": "Ji (whole blood) LoRA r16: 20k L1 0.757 cov 0.27, 40k L1 0.740 cov 0.34",
+     "source": "data/sec08_cross_cohort_steps.csv"
+    },
+    {
+     "value": "Ji (whole blood) LoRA r64: 20k L1 0.639 cov 0.38, 40k L1 0.668 cov 0.39, 51k L1 0.620 cov 0.40",
+     "source": "data/sec08_cross_cohort_steps.csv"
+    },
+    {
+     "value": "Ji (whole blood) Full fine-tune: 20k L1 0.838 cov 0.17, 40k L1 1.006 cov 0.11, 60k L1 1.032 cov 0.08, 80k L1 1.052 cov 0.07, 86k L1 1.030 cov 0.08",
+     "source": "data/sec08_cross_cohort_steps.csv"
+    }
+   ]
+  }
+ ]
+}

paper-releases/pbisc-diffusion/updates/20261003T105229Z-deck-cross-cohort-loco-k1000/diffusion/dataset/server_1/model8/presentations/2026-09-30--paper-summary--r00/data/sec08_cross_cohort_steps.csv

@@ -0,0 +1,53 @@
+cohort,mode,step,inner_val_loss,score_arm,comp_l1,coverage,precision,logfc_r,source,source_disease
+immicro,lora16sat,20000,0.10536502702130313,locoL_lora16sat_s20000_K1000,0.16262332160969473,0.45065420560747665,0.8329595015576324,,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_crosscohort_20261002/scores/immicro/locoL_lora16sat_s20000_K1000/summary.json,
+immicro,lora16sat,28500,0.1053253309236783,locoL_lora16sat_s28500_K1000,0.17491854684276595,0.45165109034267914,0.8407476635514018,,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_crosscohort_20261002/scores/immicro/locoL_lora16sat_s28500_K1000/summary.json,
+immicro,lora64sat,20000,0.10507885180413723,locoL_lora64sat_s20000_K1000,0.19608124284129383,0.437196261682243,0.8545171339563863,,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_crosscohort_20261002/scores/immicro/locoL_lora64sat_s20000_K1000/summary.json,
+immicro,lora64sat,39000,0.10486272629664001,locoL_lora64sat_s39000_K1000,0.19858024117626522,0.38174454828660437,0.8349532710280374,,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_crosscohort_20261002/scores/immicro/locoL_lora64sat_s39000_K1000/summary.json,
+immicro,fullsat,20000,0.10489554748077083,locoL_fullsat_s20000_K1000,0.2076823216876906,0.38560747663551403,0.7401869158878505,,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_crosscohort_20261002/scores/immicro/locoL_fullsat_s20000_K1000/summary.json,
+immicro,fullsat,40000,0.10458750774776594,locoL_fullsat_s40000_K1000,0.21055421464175067,0.36778816199376946,0.7288473520249221,,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_crosscohort_20261002/scores/immicro/locoL_fullsat_s40000_K1000/summary.json,
+immicro,fullsat,60000,0.10440332228662791,locoL_fullsat_s60000_K1000,0.22251011942239113,0.3490342679127726,0.7089719626168224,,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_crosscohort_20261002/scores/immicro/locoL_fullsat_s60000_K1000/summary.json,
+immicro,fullsat,65000,0.10436773711897007,locoL_fullsat_s65000_K1000,0.21255123747092092,0.34579439252336447,0.7041744548286605,,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_crosscohort_20261002/scores/immicro/locoL_fullsat_s65000_K1000/summary.json,
+ye2026_sepsis,lora16sat,20000,0.0998186856094334,locoL_lora16sat_s20000_K1000,0.5000091994646808,0.3468292682926829,0.8658536585365854,0.12455395226696071,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_crosscohort_20261002/scores/ye2026_sepsis/locoL_lora16sat_s20000_K1000/summary.json,
+ye2026_sepsis,lora16sat,26750,0.09978930106518245,locoL_lora16sat_s26750_K1000,0.4913211548128607,0.3413821138211382,0.8611382113821138,0.10171004353585707,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_crosscohort_20261002/scores/ye2026_sepsis/locoL_lora16sat_s26750_K1000/summary.json,
+ye2026_sepsis,lora64sat,20000,0.09948734277765257,locoL_lora64sat_s20000_K1000,0.5500938157804457,0.2948780487804878,0.8356097560975609,0.17680441182744347,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_crosscohort_20261002/scores/ye2026_sepsis/locoL_lora64sat_s20000_K1000/summary.json,
+ye2026_sepsis,lora64sat,40000,0.09921769783691024,locoL_lora64sat_s40000_K1000,0.5637732142083826,0.2910569105691057,0.8269918699186992,0.21467488951638702,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_crosscohort_20261002/scores/ye2026_sepsis/locoL_lora64sat_s40000_K1000/summary.json,
+ye2026_sepsis,lora64sat,59000,0.09907439871305468,locoL_lora64sat_s59000_K1000,0.5696031573329058,0.2891869918699187,0.828130081300813,0.2279128935245801,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_crosscohort_20261002/scores/ye2026_sepsis/locoL_lora64sat_s59000_K1000/summary.json,
+ye2026_sepsis,fullsat,20000,0.09932147273135306,locoL_fullsat_s20000_K1000,0.4979485447700929,0.32926829268292684,0.8376422764227642,0.12050615062254941,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_crosscohort_20261002/scores/ye2026_sepsis/locoL_fullsat_s20000_K1000/summary.json,
+ye2026_sepsis,fullsat,40000,0.09898765926070587,locoL_fullsat_s40000_K1000,0.5300574276228053,0.33471544715447155,0.8350406504065041,0.11242527537940607,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_crosscohort_20261002/scores/ye2026_sepsis/locoL_fullsat_s40000_K1000/summary.json,
+ye2026_sepsis,fullsat,60000,0.09878567852681935,locoL_fullsat_s60000_K1000,0.5459371522940706,0.33926829268292685,0.8296747967479675,0.08306109681282589,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_crosscohort_20261002/scores/ye2026_sepsis/locoL_fullsat_s60000_K1000/summary.json,
+ye2026_sepsis,fullsat,80000,0.0986245580092825,locoL_fullsat_s80000_K1000,0.5756093100530909,0.3416260162601626,0.8283739837398374,0.08726311196922498,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_crosscohort_20261002/scores/ye2026_sepsis/locoL_fullsat_s80000_K1000/summary.json,
+ye2026_sepsis,fullsat,100000,0.09848370757706539,locoL_fullsat_s100000_K1000,0.5774379174565976,0.35317073170731705,0.818780487804878,0.07776924200901651,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_crosscohort_20261002/scores/ye2026_sepsis/locoL_fullsat_s100000_K1000/summary.json,
+ye2026_sepsis,fullsat,108500,0.09843902954963422,locoL_fullsat_s108500_K1000,0.5846173784329263,0.3456910569105691,0.8208130081300813,0.07297860484594258,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_crosscohort_20261002/scores/ye2026_sepsis/locoL_fullsat_s108500_K1000/summary.json,
+imperial_eskd,lora16sat,20000,0.10483278813599435,locoL_lora16sat_s20000_K1000,0.6574725585859008,0.682863469891832,0.8041052721233285,0.5267014418562213,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_crosscohort_20261002/scores/imperial_eskd/locoL_lora16sat_s20000_K1000/summary.json,
+imperial_eskd,lora16sat,40000,0.10475060781808915,locoL_lora16sat_s40000_K1000,0.6354385520845358,0.6838003577208074,0.8195639213014224,0.49115540391304124,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_crosscohort_20261002/scores/imperial_eskd/locoL_lora16sat_s40000_K1000/summary.json,
+imperial_eskd,lora64sat,20000,0.1044876395414273,locoL_lora64sat_s20000_K1000,0.6215824758631929,0.6829060557022401,0.8080231666808619,0.5106680194292705,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_crosscohort_20261002/scores/imperial_eskd/locoL_lora64sat_s20000_K1000/summary.json,
+imperial_eskd,lora64sat,40000,0.1042130491523831,locoL_lora64sat_s40000_K1000,0.6034640048005437,0.7111404480027255,0.8191806490077507,0.5353798731445953,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_crosscohort_20261002/scores/imperial_eskd/locoL_lora64sat_s40000_K1000/summary.json,
+imperial_eskd,lora64sat,60000,0.10402413906046637,locoL_lora64sat_s60000_K1000,0.5769841372055678,0.7225960310024699,0.8175623882122477,0.5679152517190105,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_crosscohort_20261002/scores/imperial_eskd/locoL_lora64sat_s60000_K1000/summary.json,
+imperial_eskd,lora64sat,69250,0.10398190930761674,locoL_lora64sat_s69250_K1000,0.5944384838913485,0.7228941316753258,0.8223319989779405,0.5804458634433078,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_crosscohort_20261002/scores/imperial_eskd/locoL_lora64sat_s69250_K1000/summary.json,
+imperial_eskd,fullsat,20000,0.10430546629208105,locoL_fullsat_s20000_K1000,0.6320557687766534,0.6004599267524061,0.7625415211651477,0.5321348760714089,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_crosscohort_20261002/scores/imperial_eskd/locoL_fullsat_s20000_K1000/summary.json,
+imperial_eskd,fullsat,40000,0.10398840397182436,locoL_fullsat_s40000_K1000,0.608905739142699,0.6026318030832126,0.7874116344434035,0.5027476205152808,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_crosscohort_20261002/scores/imperial_eskd/locoL_fullsat_s40000_K1000/summary.json,
+imperial_eskd,fullsat,60000,0.10378229469750766,locoL_fullsat_s60000_K1000,0.5648876304384981,0.6114470658376628,0.7981006728558044,0.49841549661342743,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_crosscohort_20261002/scores/imperial_eskd/locoL_fullsat_s60000_K1000/summary.json,
+imperial_eskd,fullsat,80000,0.10363000631332397,locoL_fullsat_s80000_K1000,0.5760579253485651,0.6047610936036113,0.809385912613917,0.46572797196536914,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_crosscohort_20261002/scores/imperial_eskd/locoL_fullsat_s80000_K1000/summary.json,
+imperial_eskd,fullsat,93000,0.10355161361534286,locoL_fullsat_s93000_K1000,0.5795732789528253,0.6076143429009454,0.8022314964653777,0.45945747768103096,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_crosscohort_20261002/scores/imperial_eskd/locoL_fullsat_s93000_K1000/summary.json,
+giroux2022,lora16sat,20000,0.1034145244383112,locoL_lora16sat_s20000_K1000,0.41567310153778664,0.7930555555555555,0.9913888888888889,0.2956654638808478,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_crosscohort_20261002/scores/giroux2022/locoL_lora16sat_s20000_K1000/summary.json,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_crosscohort_20261002/scores_nosex/giroux2022/locoL_lora16sat_s20000_K1000/summary.json
+giroux2022,lora16sat,35750,0.10336943574936477,locoL_lora16sat_s35750_K1000,0.43086767828477845,0.8188888888888889,0.9947222222222222,0.299296791280024,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_crosscohort_20261002/scores/giroux2022/locoL_lora16sat_s35750_K1000/summary.json,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_crosscohort_20261002/scores_nosex/giroux2022/locoL_lora16sat_s35750_K1000/summary.json
+giroux2022,lora64sat,20000,0.10309372149934672,locoL_lora64sat_s20000_K1000,0.4914305111532487,0.8025,0.9936111111111111,0.26353377324727834,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_crosscohort_20261002/scores/giroux2022/locoL_lora64sat_s20000_K1000/summary.json,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_crosscohort_20261002/scores_nosex/giroux2022/locoL_lora64sat_s20000_K1000/summary.json
+giroux2022,lora64sat,40000,0.10284607811369981,locoL_lora64sat_s40000_K1000,0.4692412988819341,0.8180555555555555,0.9941666666666666,0.23874546841194885,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_crosscohort_20261002/scores/giroux2022/locoL_lora64sat_s40000_K1000/summary.json,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_crosscohort_20261002/scores_nosex/giroux2022/locoL_lora64sat_s40000_K1000/summary.json
+giroux2022,lora64sat,60000,0.10267554886987187,locoL_lora64sat_s60000_K1000,0.42970541878518415,0.8152777777777778,0.9936111111111111,0.2724235616940377,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_crosscohort_20261002/scores/giroux2022/locoL_lora64sat_s60000_K1000/summary.json,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_crosscohort_20261002/scores_nosex/giroux2022/locoL_lora64sat_s60000_K1000/summary.json
+giroux2022,lora64sat,69250,0.10262443648058582,locoL_lora64sat_s69250_K1000,0.4098228307587457,0.8086111111111111,0.9944444444444445,0.27821710171594927,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_crosscohort_20261002/scores/giroux2022/locoL_lora64sat_s69250_K1000/summary.json,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_crosscohort_20261002/scores_nosex/giroux2022/locoL_lora64sat_s69250_K1000/summary.json
+giroux2022,fullsat,20000,0.10293838366245231,locoL_fullsat_s20000_K1000,0.5427203589458633,0.7530555555555556,0.985,0.20774513671763944,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_crosscohort_20261002/scores/giroux2022/locoL_fullsat_s20000_K1000/summary.json,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_crosscohort_20261002/scores_nosex/giroux2022/locoL_fullsat_s20000_K1000/summary.json
+giroux2022,fullsat,40000,0.10261273853518445,locoL_fullsat_s40000_K1000,0.5323483591706378,0.7527777777777778,0.9880555555555556,0.20257937229680234,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_crosscohort_20261002/scores/giroux2022/locoL_fullsat_s40000_K1000/summary.json,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_crosscohort_20261002/scores_nosex/giroux2022/locoL_fullsat_s40000_K1000/summary.json
+giroux2022,fullsat,60000,0.10240320551369075,locoL_fullsat_s60000_K1000,0.4988853291728783,0.7563888888888889,0.9863888888888889,0.21660646011764068,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_crosscohort_20261002/scores/giroux2022/locoL_fullsat_s60000_K1000/summary.json,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_crosscohort_20261002/scores_nosex/giroux2022/locoL_fullsat_s60000_K1000/summary.json
+giroux2022,fullsat,80000,0.1022582295529469,locoL_fullsat_s80000_K1000,0.4661782609721092,0.7644444444444445,0.9838888888888889,0.22820748246226313,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_crosscohort_20261002/scores/giroux2022/locoL_fullsat_s80000_K1000/summary.json,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_crosscohort_20261002/scores_nosex/giroux2022/locoL_fullsat_s80000_K1000/summary.json
+giroux2022,fullsat,100000,0.10214271162156806,locoL_fullsat_s100000_K1000,0.48950182739661546,0.7636111111111111,0.9827777777777778,0.22468780640184455,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_crosscohort_20261002/scores/giroux2022/locoL_fullsat_s100000_K1000/summary.json,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_crosscohort_20261002/scores_nosex/giroux2022/locoL_fullsat_s100000_K1000/summary.json
+giroux2022,fullsat,120000,0.10204532777777675,locoL_fullsat_s120000_K1000,0.46479005295114834,0.7755555555555556,0.9844444444444445,0.19614193186548523,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_crosscohort_20261002/scores/giroux2022/locoL_fullsat_s120000_K1000/summary.json,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_crosscohort_20261002/scores_nosex/giroux2022/locoL_fullsat_s120000_K1000/summary.json
+ji2025_chili,lora16sat,20000,0.10304877331546235,locoL_lora16sat_s20000_K1000,0.7572057975657671,0.27090909090909093,0.8371717171717171,0.14448522107370879,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_crosscohort_20261002/scores/ji2025_chili/locoL_lora16sat_s20000_K1000/summary.json,
+ji2025_chili,lora16sat,40000,0.1029594385728353,locoL_lora16sat_s40000_K1000,0.7395379838267597,0.3387878787878788,0.9105050505050505,0.045342224880778284,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_crosscohort_20261002/scores/ji2025_chili/locoL_lora16sat_s40000_K1000/summary.json,
+ji2025_chili,lora64sat,20000,0.1027188166279835,locoL_lora64sat_s20000_K1000,0.6387148684316141,0.3814141414141414,0.9309090909090909,0.1991321409551958,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_crosscohort_20261002/scores/ji2025_chili/locoL_lora64sat_s20000_K1000/summary.json,
+ji2025_chili,lora64sat,40000,0.10246544092837157,locoL_lora64sat_s40000_K1000,0.6684182614003742,0.38747474747474747,0.9476767676767677,0.17688721837501256,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_crosscohort_20261002/scores/ji2025_chili/locoL_lora64sat_s40000_K1000/summary.json,
+ji2025_chili,lora64sat,51750,0.10236734301416259,locoL_lora64sat_s51750_K1000,0.6199837283023538,0.39515151515151514,0.9470707070707071,0.16414840904557088,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_crosscohort_20261002/scores/ji2025_chili/locoL_lora64sat_s51750_K1000/summary.json,
+ji2025_chili,fullsat,20000,0.10256429586907603,locoL_fullsat_s20000_K1000,0.8380828593421132,0.1684848484848485,0.7137373737373738,0.1866168577702635,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_crosscohort_20261002/scores/ji2025_chili/locoL_fullsat_s20000_K1000/summary.json,
+ji2025_chili,fullsat,40000,0.10220877709798515,locoL_fullsat_s40000_K1000,1.0064364587606467,0.11212121212121212,0.6105050505050506,0.1487554246967952,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_crosscohort_20261002/scores/ji2025_chili/locoL_fullsat_s40000_K1000/summary.json,
+ji2025_chili,fullsat,60000,0.10198306482558073,locoL_fullsat_s60000_K1000,1.0320664027955349,0.08363636363636363,0.5414141414141415,0.1160886730996881,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_crosscohort_20261002/scores/ji2025_chili/locoL_fullsat_s60000_K1000/summary.json,
+ji2025_chili,fullsat,80000,0.10181655211261276,locoL_fullsat_s80000_K1000,1.0518949849638783,0.07212121212121213,0.5119191919191919,0.13200511557944813,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_crosscohort_20261002/scores/ji2025_chili/locoL_fullsat_s80000_K1000/summary.json,
+ji2025_chili,fullsat,86750,0.10176931602428808,locoL_fullsat_s86750_K1000,1.0304931953192484,0.08121212121212121,0.5107070707070707,0.1386792074228318,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_crosscohort_20261002/scores/ji2025_chili/locoL_fullsat_s86750_K1000/summary.json,