Archive 4 checkpoints (1-4)

paper-releases/pbisc-diffusion/updates/20261014T113716Z-figure1-overview-training-corpus/diffusion/dataset/server_1/model8/presentations/2026-09-30--paper-summary--r00/data/figure1_revision_20261014/train_corpus/training_celltype_counts.csv

@@ -0,0 +1,12 @@
+celltype,n_cells,training_fraction,color
+T cell,19846978,0.5988579232367511,#4C6E91
+NK cell,2720293,0.08208146432043566,#8FB0CF
+B cell,2891493,0.08724721179383599,#C98A4B
+Monocyte,5953356,0.17963512684142904,#5E8C6A
+DC,385387,0.011628574308010106,#A8C79C
+Progenitor cell,968238,0.02921537968545667,#8E6C9E
+Platelet,96620,0.002915388556541701,#D3B5D3
+Erythrocyte,21722,0.0006554343844462723,#B5655E
+ILC,16439,0.000496026417729135,#7FB3B0
+Other,3425,0.00010334512322661277,#9A9A9A
+Unlabelled,237429,0.007164125332137648,#E2E2E2

paper-releases/pbisc-diffusion/updates/20261014T113716Z-figure1-overview-training-corpus/diffusion/dataset/server_1/model8/presentations/2026-09-30--paper-summary--r00/data/figure1_revision_20261014/train_corpus/training_condition_counts.csv

@@ -0,0 +1,13 @@
+condition,n_cells,training_fraction,disease_detail_fraction,color
+Healthy,29304952,0.8842405476175101,,#A9B8CC
+SLE,619230,0.018684496541785525,0.16140795552529594,#7A4F6E
+RA,226113,0.006822679079748641,0.05893841875828244,#B5655E
+ACPA+ at risk of RA,1488898,0.04492564884141819,0.38809486324257875,#DDA59B
+JDM,61756,0.0018634106364912987,0.016097265477157396,#A58BB0
+COVID-19,999716,0.030165189258866108,0.26058510677119445,#D08C3C
+Post-COVID-19,76799,0.0023173144872060247,0.020018360829396512,#E8C68E
+Influenza,18243,0.0005504598782549188,0.004755204580927884,#9C6B2A
+MDS,125013,0.0037721120846506695,0.03258578031439662,#3F7A73
+MDS/MPN,119111,0.003594026561356226,0.03104737010573377,#6FA39B
+Cytopenia,90512,0.0027310872389743578,0.023592779533461856,#A9D0C8
+DRESS,11037,0.00033302777373784675,0.0028768948615743605,#5F5F5F

paper-releases/pbisc-diffusion/updates/20261014T113716Z-figure1-overview-training-corpus/diffusion/dataset/server_1/model8/presentations/2026-09-30--paper-summary--r00/data/figure1_revision_20261014/train_corpus/training_dataset_counts.csv

@@ -0,0 +1,23 @@
+dataset_prefix,dataset,train_cells
+065_A,Sound Life,11138182
+304_A,Parse 10M cytokines,7711697
+061_A,RA at-risk cohort,3253619
+200_A,Immunobiology of Aging,3014412
+009_A,Human Immune Health Atlas,1443923
+006_A,AIDA,991970
+001_A,Perez SLE,996252
+005_A,OneK1K,995251
+204_B,Circulating HSPC (aging/MDS),808473
+074_A,COMBAT,657262
+010_A,ScaleBio PBMC,685024
+203_B,Indonesia diversity,363636
+093_C,SARS-CoV-2 local and systemic,336885
+202_B,COVID-19 time course,281960
+053_B,CITE-seq PBMC,114082
+007_A,Miao RA,85902
+071_C,JDM CITE-seq,81787
+058_B,COVID-19 immunodeficiency,75412
+302_A,IL-36 stimulation,37807
+081_B,SARS-CoV-2 Seq-Well,33040
+300b_A,DRESS,19816
+301_A,SLE B cells,14988

paper-releases/pbisc-diffusion/updates/20261014T113716Z-figure1-overview-training-corpus/diffusion/dataset/server_1/model8/presentations/2026-09-30--paper-summary--r00/data/figure1_revision_20261014/train_corpus/verified_data.json

@@ -0,0 +1,110 @@
+{
+  "n_cells": 33141380,
+  "datasets": 22,
+  "samples": 5232,
+  "donors": 2572,
+  "healthy_cells": 29304952,
+  "disease_or_at_risk_cells": 3836428,
+  "at_risk_cells": 1488898,
+  "disease_history_without_at_risk_cells": 2347530,
+  "condition_cells": {
+    "ACPA+ at risk of RA": 1488898,
+    "COVID-19": 999716,
+    "Cytopenia": 90512,
+    "DRESS": 11037,
+    "Healthy": 29304952,
+    "Influenza": 18243,
+    "JDM": 61756,
+    "MDS": 125013,
+    "MDS/MPN": 119111,
+    "Post-COVID-19": 76799,
+    "RA": 226113,
+    "SLE": 619230
+  },
+  "celltype_cells": {
+    "B cell": 2891493,
+    "Monocyte": 5953356,
+    "T cell": 19846978,
+    "DC": 385387,
+    "NK cell": 2720293,
+    "Progenitor cell": 968238,
+    "Unlabelled": 237429,
+    "Erythrocyte": 21722,
+    "ILC": 16439,
+    "Platelet": 96620,
+    "Other": 3425
+  },
+  "healthy_cmv_seropositive_cells": 7816432,
+  "healthy_in_vitro_cells": 7749504,
+  "overlay_cells": {
+    "val": 11403,
+    "train": 99769,
+    "test": 13233
+  },
+  "split_cells": {
+    "train": 33141380,
+    "val": 4361032,
+    "test": 3892772
+  },
+  "corpus_fingerprint": "eeb609250457248225432b6df94573b26a8cad8ac743670b5ca43134fea7e007",
+  "maps": {
+    "COND_COLOR": {
+      "Healthy": "#A9B8CC",
+      "SLE": "#7A4F6E",
+      "RA": "#B5655E",
+      "ACPA+ at risk of RA": "#DDA59B",
+      "JDM": "#A58BB0",
+      "COVID-19": "#D08C3C",
+      "Post-COVID-19": "#E8C68E",
+      "Influenza": "#9C6B2A",
+      "MDS": "#3F7A73",
+      "MDS/MPN": "#6FA39B",
+      "Cytopenia": "#A9D0C8",
+      "DRESS": "#5F5F5F"
+    },
+    "L1_ORDER": [
+      "T cell",
+      "NK cell",
+      "B cell",
+      "Monocyte",
+      "DC",
+      "Progenitor cell",
+      "Platelet",
+      "Erythrocyte",
+      "ILC",
+      "Other",
+      "Unlabelled"
+    ],
+    "L1_COLOR": {
+      "T cell": "#4C6E91",
+      "NK cell": "#8FB0CF",
+      "B cell": "#C98A4B",
+      "Monocyte": "#5E8C6A",
+      "DC": "#A8C79C",
+      "Progenitor cell": "#8E6C9E",
+      "Platelet": "#D3B5D3",
+      "Erythrocyte": "#B5655E",
+      "ILC": "#7FB3B0",
+      "Other": "#9A9A9A",
+      "Unlabelled": "#E2E2E2"
+    },
+    "L1_MERGE": {
+      "NKT cell": "Other",
+      "Granulocyte": "Other",
+      "Neutrophil": "Other",
+      "Mast cell": "Other",
+      "__unknown__": "Unlabelled",
+      "No label (overlay)": "Unlabelled"
+    }
+  },
+  "source_total_cells": 41395184,
+  "all_source_donors": 3199,
+  "checks": {
+    "source_row_alignment_all_base_shards": true,
+    "all_source_l1_replay_matches_saved_table": true,
+    "all_sample_counts_replay_matches_index": true,
+    "all_split_counts_match_saved_tables": true,
+    "donor_correction_replay_matches_saved_total": true,
+    "all_train_covered_by_final_run_contract": true
+  }
+}