Archive 4 checkpoints (1-4)
Browse files- paper-releases/pbisc-diffusion/updates/20261012T130738Z-strictpairs-implementation/diffusion/dataset/server_1/model8/plans/paper_figures_strictpairs_20261012/archive/20261012T130738Z-strictpairs-implementation/snapshot/scsemi/immicro/healthy/fold0/n5/assignment.json +269 -0
- paper-releases/pbisc-diffusion/updates/20261012T130738Z-strictpairs-implementation/diffusion/dataset/server_1/model8/plans/paper_figures_strictpairs_20261012/archive/20261012T130738Z-strictpairs-implementation/snapshot/scsemi/ye2026_sepsis/disease/draw4/prepared.json +24 -0
- paper-releases/pbisc-diffusion/updates/20261012T130738Z-strictpairs-implementation/diffusion/dataset/server_1/model8/plans/paper_figures_strictpairs_20261012/archive/20261012T130738Z-strictpairs-implementation/snapshot/scsemi/ye2026_sepsis/disease/draw4/run_manifest.json +103 -0
- paper-releases/pbisc-diffusion/updates/20261012T130738Z-strictpairs-implementation/diffusion/dataset/server_1/model8/plans/paper_figures_strictpairs_20261012/archive/20261012T130738Z-strictpairs-implementation/snapshot/scsemi/ye2026_sepsis/disease/draw4/status.json +11 -0
paper-releases/pbisc-diffusion/updates/20261012T130738Z-strictpairs-implementation/diffusion/dataset/server_1/model8/plans/paper_figures_strictpairs_20261012/archive/20261012T130738Z-strictpairs-implementation/snapshot/scsemi/immicro/healthy/fold0/n5/assignment.json
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| 1 |
+
{
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| 2 |
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"rule": "upstream representative_selection.update_membership: nearest representative by Euclidean distance in processed_bulkdata.obsm['X_pca'] (initsetup PCA of log1p CP10K real bulk)",
|
| 3 |
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"n_pca_components": 26,
|
| 4 |
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"bulk_row_order": [
|
| 5 |
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"HS3",
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| 6 |
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"HS6",
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| 7 |
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"HS7",
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| 8 |
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"HS13",
|
| 9 |
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"HS18",
|
| 10 |
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"HS30",
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| 11 |
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"HS31",
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| 12 |
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"HS34",
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| 13 |
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"HS37",
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| 14 |
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"HS38",
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| 15 |
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"HS39",
|
| 16 |
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"HS40",
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| 17 |
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"HS52",
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| 18 |
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"HS53",
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| 19 |
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"HS58",
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| 20 |
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"HS60",
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| 21 |
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"HS66",
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| 22 |
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"HS81",
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| 23 |
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"HS82",
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| 24 |
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"HS83",
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| 25 |
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"HS85",
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| 26 |
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"HS86",
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| 27 |
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"HS95",
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| 28 |
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"HS98",
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| 29 |
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"HS101",
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| 30 |
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"HS107",
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| 31 |
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"HS109"
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| 32 |
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],
|
| 33 |
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"representative_indices": [
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| 34 |
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11,
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| 35 |
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| 36 |
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| 37 |
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| 38 |
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26
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| 39 |
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],
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| 40 |
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"targets": {
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| 41 |
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| 42 |
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| 43 |
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| 50 |
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| 52 |
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| 53 |
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| 62 |
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| 63 |
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| 70 |
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| 73 |
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"HS109": 8.235682606485216
|
| 249 |
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}
|
| 250 |
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},
|
| 251 |
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"HS107": {
|
| 252 |
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"representative": "HS53",
|
| 253 |
+
"distances": {
|
| 254 |
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"HS40": 11.811713689628583,
|
| 255 |
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"HS30": 12.741521694788847,
|
| 256 |
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"HS53": 11.122479187910544,
|
| 257 |
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"HS39": 16.991721132459837,
|
| 258 |
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"HS109": 15.021515142073499
|
| 259 |
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}
|
| 260 |
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}
|
| 261 |
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},
|
| 262 |
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"targets_per_representative": {
|
| 263 |
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"HS40": 4,
|
| 264 |
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"HS30": 3,
|
| 265 |
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"HS53": 6,
|
| 266 |
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"HS39": 3,
|
| 267 |
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"HS109": 6
|
| 268 |
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|
| 269 |
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|
paper-releases/pbisc-diffusion/updates/20261012T130738Z-strictpairs-implementation/diffusion/dataset/server_1/model8/plans/paper_figures_strictpairs_20261012/archive/20261012T130738Z-strictpairs-implementation/snapshot/scsemi/ye2026_sepsis/disease/draw4/prepared.json
ADDED
|
@@ -0,0 +1,24 @@
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| 1 |
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{
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| 2 |
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"run_signature": "95f07df5052abc087f7b313c3f0bdd4a441e60b9fcf6072323e26964ad6fcdf6",
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| 3 |
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| 4 |
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"files": {
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| 5 |
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| 6 |
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| 7 |
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"hvset.npy": "b34bc36f3cd1983c653a8c9f95304581e7d9d3b6c49a0479e2842af55308d05e",
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| 9 |
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"hvmask.npy": "c9041ba160d58c351da2151f461fdb6171042966c1dbc72c32b71f39b03442a8",
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| 10 |
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"status/init_representatives.txt": "11888da7bb59460a22b0d3cc02f497d1f664f567c1e8b0d705f7c0f8919a179a",
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| 11 |
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"status/init_cluster_labels.txt": "7252a751e537e80ca644353a2ab413ac49942688c5ff2b83aee7705180a44fef",
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| 12 |
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| 13 |
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| 14 |
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"sample_sc/Res-PS22.h5ad": "d51c8ba6cb7b24c58bd6a3ae383ca8cb8ab018c8c73891a105a0b4971eba3974",
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| 16 |
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| 17 |
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"geneset_scores/IC23.npy": "c428fcb488d22999cb8a7ed923adef66f69e4c64da758d3b6caf12a0e3c0e940",
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"geneset_scores/Res-PS22.npy": "af01f4dabeb0427ba4b89222b88f582830cd1bfbc2ad7c6a9a38df4b1beb681d",
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"geneset_scores/Abd-S102.npy": "b3c8f9390ff23041fd26d30425103094256ceab7739b20e0e8f256744cbc1692",
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"geneset_scores/Skin-S46.npy": "23238aa6f62ac988ac80bdd462937410d98896a3c34223183c7b9598316a90af"
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| 22 |
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},
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"genesets_gmt_sha256": "9c4386ac1ff666fc88301e126f1a1c6452122c6b63f311131a640bffe9c4d84b"
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}
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paper-releases/pbisc-diffusion/updates/20261012T130738Z-strictpairs-implementation/diffusion/dataset/server_1/model8/plans/paper_figures_strictpairs_20261012/archive/20261012T130738Z-strictpairs-implementation/snapshot/scsemi/ye2026_sepsis/disease/draw4/run_manifest.json
ADDED
|
@@ -0,0 +1,103 @@
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|
| 1 |
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{
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| 3 |
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| 4 |
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"method": "scSemiProfiler",
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| 5 |
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| 6 |
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| 7 |
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| 8 |
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| 9 |
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| 10 |
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| 11 |
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| 12 |
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},
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| 13 |
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| 14 |
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| 15 |
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| 16 |
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| 17 |
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| 18 |
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| 19 |
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"weight": 0.5,
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| 20 |
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"k": 15
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| 21 |
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},
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| 22 |
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"representatives": "fixed: every usable row of the split's training donors (no active learning)",
|
| 23 |
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"assignment": "upstream representative_selection.update_membership: nearest representative by Euclidean distance in processed_bulkdata.obsm['X_pca'] (initsetup PCA of log1p CP10K real bulk)",
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| 24 |
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| 26 |
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| 27 |
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| 28 |
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| 29 |
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| 70 |
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|
paper-releases/pbisc-diffusion/updates/20261012T130738Z-strictpairs-implementation/diffusion/dataset/server_1/model8/plans/paper_figures_strictpairs_20261012/archive/20261012T130738Z-strictpairs-implementation/snapshot/scsemi/ye2026_sepsis/disease/draw4/status.json
ADDED
|
@@ -0,0 +1,11 @@
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{
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