Archive 2 checkpoints (1-2)
Browse files
paper-releases/pbisc-diffusion/updates/20261004T141237Z-c1q-crossdisease/diffusion/metadata/NOTE.md
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# PBISC-diffusion update 20261004T141237Z-c1q-crossdisease
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Cross-disease C1Q-high test (plans/c1q_crossdisease_20261004, 2026-10-04): final model zero-shot on each sample's sc pseudobulk (K = 1000) for DRESS GSE132802 (in the pretraining corpus), Kawasaki GSE168732 and SLE GSE135779 (not in the corpus). Generated / observed (depth-matched) rate of monocytes with >= 2 C1Q genes: DRESS 0.24 (uncultured PBMC 0.53, Spearman over samples 0.96), Kawasaki 0.10 (0.17), SLE 0.20 (0.42); disease direction reversed in Kawasaki and adult SLE. Code, README, conditions, labels, tables; NPZs and read-out h5ads on server_2.
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Payload states are recorded as supplied. Inference locations are pointers, not archived generated outputs.
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paper-releases/pbisc-diffusion/updates/20261004T141237Z-c1q-crossdisease/diffusion/metadata/inference_locations.json
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{
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"locations": [
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{
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"artifact_role": "inference_output",
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"checkpoint": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/runs/f01_6k_1x_seed20260627/checkpoint_epoch_016.pt",
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"checkpoint_sha256": "8c7cd0e83e2bc19fe03dfcbc084919a1e2f61be8cc8bc12f4caf543dfda91633",
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"cohort": "dress",
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"condition_npz": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/c1q_crossdisease_20261004/data/dress/conditions_pseudo_K1000.npz",
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"condition_sha256": "6968ba6f73762f535d2008fa5d4d129fb2515e87b143df0affac90bad483d0e9",
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"experiment": "c1q_crossdisease_20261004",
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"host": "server_2",
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"move_marker_server_1": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/c1q_crossdisease_20261004/generated/dress_zs_s13.moved",
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"observed_output": {
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"kind": "file",
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"presence": "observed",
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"stat": {
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"dev": 66306,
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"ino": 8159937,
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"mtime_ns": 1791122340069370544,
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"size": 921673798
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}
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},
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"observed_receipt": {
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"kind": "file",
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"presence": "observed",
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"stat": {
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"dev": 66306,
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"ino": 8159936,
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"mtime_ns": 1791122340488376808,
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"size": 1420
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}
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},
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"output_sha256": "63be26a1ec9a7d9f99b7f2edf88b1bf3d4da6d1065915fe2ba71dd750dc49f0b",
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"path": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/c1q_crossdisease_20261004/generated/dress_zs_s13.npz",
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"receipt": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/c1q_crossdisease_20261004/generated/dress_zs_s13.log",
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"seed": 20260913,
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"sha256": "63be26a1ec9a7d9f99b7f2edf88b1bf3d4da6d1065915fe2ba71dd750dc49f0b",
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"sha256_basis": "existing_receipt",
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"sha_basis": "existing_receipt",
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"state": "completed",
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"steps": 50
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},
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{
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"artifact_role": "inference_output",
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"checkpoint": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/runs/f01_6k_1x_seed20260627/checkpoint_epoch_016.pt",
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"checkpoint_sha256": "8c7cd0e83e2bc19fe03dfcbc084919a1e2f61be8cc8bc12f4caf543dfda91633",
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"cohort": "kawasaki",
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"condition_npz": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/c1q_crossdisease_20261004/data/kawasaki/conditions_pseudo_K1000.npz",
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"condition_sha256": "4b3f94de5eb4617830ae65256a8191b9d24c13be013deae01874be8e11e52d7e",
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"experiment": "c1q_crossdisease_20261004",
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"host": "server_2",
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"move_marker_server_1": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/c1q_crossdisease_20261004/generated/kawasaki_zs_s13.moved",
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"observed_output": {
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"kind": "file",
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"presence": "observed",
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"stat": {
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"dev": 66306,
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"mtime_ns": 1791122541675391329,
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}
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},
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"observed_receipt": {
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"kind": "file",
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"presence": "observed",
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"stat": {
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}
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},
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"output_sha256": "a91e15d5b3d347327744a488d77312405907a1cc1c25ffc7f9a559dc125bb78d",
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"path": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/c1q_crossdisease_20261004/generated/kawasaki_zs_s13.npz",
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"receipt": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/c1q_crossdisease_20261004/generated/kawasaki_zs_s13.log",
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"seed": 20260913,
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},
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{
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"artifact_role": "inference_output",
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"checkpoint": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/runs/f01_6k_1x_seed20260627/checkpoint_epoch_016.pt",
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"checkpoint_sha256": "8c7cd0e83e2bc19fe03dfcbc084919a1e2f61be8cc8bc12f4caf543dfda91633",
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"cohort": "sle",
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"condition_npz": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/c1q_crossdisease_20261004/data/sle/conditions_pseudo_K1000.npz",
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"condition_sha256": "53c55d96167e596fc9f3f85861a37930f584599a8e04e9b54733fa90eaadc15c",
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"experiment": "c1q_crossdisease_20261004",
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"host": "server_2",
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| 92 |
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"move_marker_server_1": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/c1q_crossdisease_20261004/generated/sle_zs_s13.moved",
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"observed_output": {
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"kind": "file",
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"presence": "observed",
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"stat": {
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},
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},
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"path": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/c1q_crossdisease_20261004/generated/sle_zs_s13.npz",
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| 115 |
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"receipt": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/c1q_crossdisease_20261004/generated/sle_zs_s13.log",
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"sha_basis": "existing_receipt",
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"state": "completed",
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"steps": 50
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},
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{
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"artifact_role": "inference_output",
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"cohort": "dress",
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"experiment": "c1q_crossdisease_20261004",
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"host": "server_2",
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| 128 |
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"move_marker_server_1": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/c1q_crossdisease_20261004/work/dress_zs_s13_poisson.h5ad.moved",
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"note": "Poisson read-out h5ad moved to server_2 (sha-checked)",
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| 130 |
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"observed_output": {
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"kind": "file",
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"presence": "observed",
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| 133 |
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| 138 |
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}
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| 139 |
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},
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| 140 |
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"observed_receipt": null,
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| 141 |
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"path": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/c1q_crossdisease_20261004/work/dress_zs_s13_poisson.h5ad",
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| 142 |
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"sha256": "0f3919528f28d5a1114055477b2fb89cc4c194647a3f550d20549115a41ab0b7",
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| 143 |
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"sha256_basis": "presence_unverified",
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| 144 |
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"sha_basis": "presence_unverified",
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| 145 |
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"state": "presence_only"
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| 146 |
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},
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{
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| 148 |
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"artifact_role": "inference_output",
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| 149 |
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"cohort": "kawasaki",
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| 150 |
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"experiment": "c1q_crossdisease_20261004",
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| 151 |
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"host": "server_2",
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| 152 |
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"move_marker_server_1": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/c1q_crossdisease_20261004/work/kawasaki_zs_s13_poisson.h5ad.moved",
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| 153 |
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"note": "Poisson read-out h5ad moved to server_2 (sha-checked)",
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| 154 |
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"observed_output": {
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| 155 |
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"kind": "file",
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| 156 |
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}
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},
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"path": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/c1q_crossdisease_20261004/work/kawasaki_zs_s13_poisson.h5ad",
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"sha256": "c76d5ba075b3b1e505e111cd17be350a669243732c8794a2d51e4aec7766870f",
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"sha256_basis": "presence_unverified",
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"sha_basis": "presence_unverified",
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},
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{
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"cohort": "sle",
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"experiment": "c1q_crossdisease_20261004",
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"host": "server_2",
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| 176 |
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"move_marker_server_1": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/c1q_crossdisease_20261004/work/sle_zs_s13_poisson.h5ad.moved",
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"note": "Poisson read-out h5ad moved to server_2 (sha-checked)",
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| 178 |
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"observed_output": {
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| 179 |
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"kind": "file",
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"presence": "observed",
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"stat": {
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"dev": 66306,
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}
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},
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"observed_receipt": null,
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| 189 |
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"path": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/c1q_crossdisease_20261004/work/sle_zs_s13_poisson.h5ad",
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"sha256": "a66e1658423b95691fc12c5592c07f88004fc688cc36d4261c5073dd300868c3",
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"sha256_basis": "presence_unverified",
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"sha_basis": "presence_unverified",
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"state": "presence_only"
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}
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],
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"project_id": "pbisc-diffusion",
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"update_id": "20261004T141237Z-c1q-crossdisease"
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}
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