Archive 4 checkpoints (1-4)

paper-releases/pbisc-diffusion/updates/20261004T051658Z-behcet-c1q-lora3/diffusion/dataset/server_1/model8/plans/behcet_c1q_lora3_20261004/out/SUMMARY.json

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+   "hc_mean_pct": 13.0389,
+   "gap_pp": 3.6356,
+   "mw_p": 0.3429
+  },
+  {
+   "arm": "obs_thin_lora3",
+   "rows": "observed",
+   "metric": "c1q_high_rule_A",
+   "n_bd": 4,
+   "n_hc": 4,
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+   "hc_mean_pct": 6.7037,
+   "gap_pp": 1.2603,
+   "mw_p": 0.4857
+  },
+  {
+   "arm": "obs_thin_lora3",
+   "rows": "observed",
+   "metric": "c1q_high_rule_B",
+   "n_bd": 4,
+   "n_hc": 4,
+   "bd_mean_pct": 2.8832,
+   "hc_mean_pct": 2.4074,
+   "gap_pp": 0.4759,
+   "mw_p": 0.6857
+  },
+  {
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+   "metric": "c1q_high_rule_C",
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+   "hc_mean_pct": 4.0813,
+   "gap_pp": 1.0647,
+   "mw_p": 0.4857
+  },
+  {
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+   "rows": "observed",
+   "metric": "c1q_high_rule_D",
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+   "hc_mean_pct": 5.1343,
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+   "mw_p": 0.4857
+  },
+  {
+   "arm": "obs_thin_lora3",
+   "rows": "observed",
+   "metric": "monocyte_fraction",
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+   "hc_mean_pct": 13.0389,
+   "gap_pp": 3.6356,
+   "mw_p": 0.3429
+  }
+ ],
+ "capability": [
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+   "pooled_rule_A_pct": 2.614755816390694,
+   "pooled_rule_B_pct": 0.15719974848040244,
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+   "pooled_rule_D_pct": 2.614755816390694
+  },
+  {
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+   "pooled_rule_B_pct": 0.32443746729461015,
+   "pooled_rule_C_pct": 1.0570381998953426,
+   "pooled_rule_D_pct": 3.9141810570382
+  },
+  {
+   "arm": "lora3_raw_s13",
+   "monocytes": 10722,
+   "pooled_rule_A_pct": 4.299570975564261,
+   "pooled_rule_B_pct": 0.2518186905428092,
+   "pooled_rule_C_pct": 1.2497668345457937,
+   "pooled_rule_D_pct": 4.299570975564261
+  },
+  {
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+  },
+  {
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+   "monocytes": 19082,
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+   "pooled_rule_B_pct": 0.1467351430667645,
+   "pooled_rule_C_pct": 0.6288648988575621,
+   "pooled_rule_D_pct": 2.5521433811969394
+  },
+  {
+   "arm": "obs",
+   "monocytes": 6366,
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+   "pooled_rule_B_pct": 2.5290606346214264,
+   "pooled_rule_C_pct": 4.586867734841345,
+   "pooled_rule_D_pct": 5.450832547910776
+  },
+  {
+   "arm": "obs_thin_zs",
+   "monocytes": 6366,
+   "pooled_rule_A_pct": 4.586867734841345,
+   "pooled_rule_B_pct": 1.5708451146716933,
+   "pooled_rule_C_pct": 2.591894439208294,
+   "pooled_rule_D_pct": 4.586867734841345
+  },
+  {
+   "arm": "obs_thin_lora3",
+   "monocytes": 6366,
+   "pooled_rule_A_pct": 6.880301602262017,
+   "pooled_rule_B_pct": 2.419101476594408,
+   "pooled_rule_C_pct": 4.335532516493874,
+   "pooled_rule_D_pct": 5.419415645617343
+  }
+ ],
+ "train_rows": [
+  "BDV4",
+  "BDV5",
+  "BDV6"
+ ]
+}

paper-releases/pbisc-diffusion/updates/20261004T051658Z-behcet-c1q-lora3/diffusion/dataset/server_1/model8/plans/behcet_c1q_lora3_20261004/out/in_sample.csv

@@ -0,0 +1,25 @@
+donor,sc_sample,arm,monocyte_fraction_pct,c1q_high_A_pct,c1q_high_B_pct,c1q_high_C_pct,c1q_high_D_pct
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+BDV4,PBMC_BD_2,lora3_raw_s13,13.66,5.417276720351389,1.02489019033674,2.34260614934114,5.417276720351389
+BDV4,PBMC_BD_2,lora3_raw_s04,13.919999999999998,5.31609195402298,1.14942528735632,2.44252873563218,5.31609195402298
+BDV4,PBMC_BD_2,zs_raw_s04,23.46,2.72804774083546,0.0852514919011,0.51150895140664,2.72804774083546
+BDV4,PBMC_BD_2,obs,14.939987365761208,8.98520084566596,3.80549682875264,6.342494714587731,7.1881606765327595
+BDV4,PBMC_BD_2,obs_thin_zs,14.939987365761208,6.87103594080338,2.85412262156448,4.54545454545454,6.87103594080338
+BDV4,PBMC_BD_2,obs_thin_lora3,14.939987365761208,8.56236786469344,3.69978858350951,6.0253699788583495,7.08245243128964
+BDV5,PBMC_BD_3,zs_raw_s13,44.0,1.27272727272727,0.13636363636363,0.4090909090909,1.27272727272727
+BDV5,PBMC_BD_3,zs_cal_s13,20.16,4.56349206349206,0.39682539682539003,1.4880952380952301,4.56349206349206
+BDV5,PBMC_BD_3,lora3_raw_s13,19.24,4.7817047817047795,0.7276507276507199,1.87110187110187,4.7817047817047795
+BDV5,PBMC_BD_3,lora3_raw_s04,18.92,5.39112050739957,0.5285412262156399,1.7970401691331899,5.39112050739957
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+BDV5,PBMC_BD_3,obs,20.88661551577152,8.43537414965986,2.44897959183673,5.03401360544217,5.44217687074829
+BDV5,PBMC_BD_3,obs_thin_zs,20.88661551577152,5.85034013605442,1.36054421768707,2.04081632653061,5.85034013605442
+BDV5,PBMC_BD_3,obs_thin_lora3,20.88661551577152,8.299319727891149,2.04081632653061,4.76190476190476,5.17006802721088
+BDV6,PBMC_BD_4,zs_raw_s13,44.379999999999995,2.07300585849481,0.09013068949977,0.49571879224876003,2.07300585849481
+BDV6,PBMC_BD_4,zs_cal_s13,22.42,4.46030330062444,0.17841213202497,1.15967885816235,4.46030330062444
+BDV6,PBMC_BD_4,lora3_raw_s13,20.22,3.5608308605341197,0.49455984174085,1.1869436201780401,3.5608308605341197
+BDV6,PBMC_BD_4,lora3_raw_s04,20.32,3.4448818897637796,0.09842519685038999,0.59055118110236,3.4448818897637796
+BDV6,PBMC_BD_4,zs_raw_s04,43.94,1.86618115612198,0.0910332271279,0.31861629494765,1.86618115612198
+BDV6,PBMC_BD_4,obs,20.50906963136337,4.77888730385164,1.56918687589158,2.78174037089871,4.06562054208273
+BDV6,PBMC_BD_4,obs_thin_zs,20.50906963136337,2.63908701854493,0.9985734664764601,1.6405135520684702,2.63908701854493
+BDV6,PBMC_BD_4,obs_thin_lora3,20.50906963136337,4.56490727532097,1.4978601997146899,2.63908701854493,4.13694721825962

paper-releases/pbisc-diffusion/updates/20261004T051658Z-behcet-c1q-lora3/diffusion/dataset/server_1/model8/plans/behcet_c1q_lora3_20261004/out/rules_groups/group_tests.csv

@@ -0,0 +1,139 @@
+arm,metric,contrast,n1,n2,mean1,mean2,median1,median2,diff_mean,direction,values1,values2,mw_U,mw_p_two_sided_descriptive
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+zs_raw_s13,monocyte_fraction_pbmc5_cells,BDU vs BDV,3,6,0.26851977184023607,0.3701772656223558,0.27163265306122447,0.3938181280834935,-0.10165749378211975,<,0.27163;0.20155;0.33237,0.39476;0.39287;0.27444;0.23493;0.46719;0.45687,3.0,0.16666666666666666
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+zs_raw_s13,c1q_high_fraction_D,BD vs HC,9,10,0.021198180329368443,0.030981382715176496,0.020730058584948176,0.031111289888174944,-0.009783202385808053,<,0.01878;0.02128;0.01792;0.01963;0.02779;0.02410;0.02783;0.01273;0.02073,0.02614;0.02283;0.01786;0.02953;0.03587;0.03563;0.03270;0.02893;0.03677;0.04356,13.0,0.01011233392133346
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+lora3_raw_s13,monocyte_fraction_pbmc5_cells,BD vs HC,9,10,0.16722607799749542,0.12006437917901666,0.1695906432748538,0.12391891822104642,0.04716169881847876,>,0.16280;0.11229;0.16959;0.18709;0.15212;0.18139;0.13712;0.19597;0.20666,0.18503;0.13316;0.13567;0.09942;0.16188;0.06856;0.06971;0.13114;0.11670;0.09940,77.0,0.01011233392133346
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paper-releases/pbisc-diffusion/updates/20261004T051658Z-behcet-c1q-lora3/diffusion/dataset/server_1/model8/plans/behcet_c1q_lora3_20261004/out/rules_groups/marker_contrast.csv

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