Archive 4 checkpoints (1-4)
Browse files- paper-releases/pbisc-diffusion/updates/20261015T121654Z-x1-nine-core40-deck/diffusion/dataset/server_1/model8/plans/paper_figures_strictpairs_20261012/recoveries/x1_priority_completion_20261015/evaluation/units/ji2025_chili/disease/draw2/lora/receipts/score.json +71 -0
- paper-releases/pbisc-diffusion/updates/20261015T121654Z-x1-nine-core40-deck/diffusion/dataset/server_1/model8/plans/paper_figures_strictpairs_20261012/recoveries/x1_priority_completion_20261015/evaluation/units/ji2025_chili/disease/draw2/lora/score/contrast.csv +14 -0
- paper-releases/pbisc-diffusion/updates/20261015T121654Z-x1-nine-core40-deck/diffusion/dataset/server_1/model8/plans/paper_figures_strictpairs_20261012/recoveries/x1_priority_completion_20261015/evaluation/units/ji2025_chili/disease/draw2/lora/score/per_donor.csv +27 -0
- paper-releases/pbisc-diffusion/updates/20261015T121654Z-x1-nine-core40-deck/diffusion/dataset/server_1/model8/plans/paper_figures_strictpairs_20261012/recoveries/x1_priority_completion_20261015/evaluation/units/ji2025_chili/disease/draw2/lora/score/summary.json +544 -0
paper-releases/pbisc-diffusion/updates/20261015T121654Z-x1-nine-core40-deck/diffusion/dataset/server_1/model8/plans/paper_figures_strictpairs_20261012/recoveries/x1_priority_completion_20261015/evaluation/units/ji2025_chili/disease/draw2/lora/receipts/score.json
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{
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"state": "completed",
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"stage": "score",
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"at": "2026-10-15T11:42:10.600455+00:00",
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"outputs": [
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{
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"path": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/recoveries/x1_priority_completion_20261015/evaluation/units/ji2025_chili/disease/draw2/lora/score/arms/lora/deg_top50_lists.csv",
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"path": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/recoveries/x1_priority_completion_20261015/evaluation/units/ji2025_chili/disease/draw2/lora/score/arms/lora/generated_cells.parquet",
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{
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"path": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/recoveries/x1_priority_completion_20261015/evaluation/units/ji2025_chili/disease/draw2/lora/score/arms/lora/labels/labels.manifest.json",
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"path": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/recoveries/x1_priority_completion_20261015/evaluation/units/ji2025_chili/disease/draw2/lora/score/arms/lora/labels/labels.parquet",
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"path": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/recoveries/x1_priority_completion_20261015/evaluation/units/ji2025_chili/disease/draw2/lora/score/contrast.csv",
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"path": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/recoveries/x1_priority_completion_20261015/evaluation/units/ji2025_chili/disease/draw2/lora/score/per_donor.csv",
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"path": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/recoveries/x1_priority_completion_20261015/evaluation/units/ji2025_chili/disease/draw2/lora/score/summary.json",
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"path": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/recoveries/x1_priority_completion_20261015/evaluation/units/ji2025_chili/disease/draw2/lora/scoring_support.json",
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"support_sha256": "fa20d986ff3869bc9b0a15ab6f16bae3a01a5f09a515f0a961146219c92595b4",
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"binding": {
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"arm": "lora",
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"npz": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/generated/ji2025_chili/disease/draw2/lora.npz",
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"npz_sha256": "2406835f4d0e1a90a644e0340d1bc346a2dfbd90fc12874fd8d34d0f4e600d09",
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"receipt": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/generated/ji2025_chili/disease/draw2/lora.log",
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"receipt_sha256": "5abd988cc3e1303cb7393b78a9a0ff61f0dd481aa2d0dde0b458be9dcef41a22",
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"source_binding": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/runs/ji2025_chili/disease/draw2/lora/RUN.json",
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"source_binding_sha256": "599e93e9eddd3575f9ab22d8ff2b794182502f9a2c5c18f0cb66c92daa40f99b",
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"condition_npz": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/data/ji2025_chili/disease/draw2/test_raw.npz",
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"condition_sha256": "70953ef3c751fa832f2c8bf184fa1cd9fc6ef2e04329101441f0fce90b64ddc0",
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"checkpoint_sha256": "2f29a930b31c4e7b8c02c7654fbd0d6f3c5d3b607587eab42c3fbf0709becfa9",
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"support_sha256": "fa20d986ff3869bc9b0a15ab6f16bae3a01a5f09a515f0a961146219c92595b4"
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},
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"reuse": {
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"source_summary": {
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"path": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/recoveries/disease_width_comparison_20261015/ji2025_chili/draw2/score/summary.json",
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"sha256": "046d8926e86d70983dbddcf74141c48878a593e297517d6f75296a6d3422bdfc",
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"bytes": 15886
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},
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"source_arm": "lora",
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"validated_support_sha256": "fa20d986ff3869bc9b0a15ab6f16bae3a01a5f09a515f0a961146219c92595b4",
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"annotation_reexecuted": false
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}
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paper-releases/pbisc-diffusion/updates/20261015T121654Z-x1-nine-core40-deck/diffusion/dataset/server_1/model8/plans/paper_figures_strictpairs_20261012/recoveries/x1_priority_completion_20261015/evaluation/units/ji2025_chili/disease/draw2/lora/score/contrast.csv
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arm,celltype,statistic,n_genes,r_generated,r_broadcast,partial_r_generated_given_broadcast,r_generated_vs_broadcast,n_case_donors_obs,n_control_donors_obs,n_case_donors_gen,n_control_donors_gen,n_cells_obs,n_cells_gen,deg_scored,top50_overlap,top50_jaccard,obs_top_list_size,gen_top_list_size,n_sig_obs,n_sig_gen,top50_overlap_broadcast,top50_jaccard_broadcast,broadcast_top_list_size,n_sig_broadcast
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lora,T cell,mean_cp10k,3072,0.4847366561716925,0.2701865645650968,0.4465055237538759,0.2559707834610795,16,10,16,10,42751,25696,,,,,,,,,,,
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lora,T cell,pseudobulk_log1p_cpm,3072,0.144584897097202,0.2951165786415725,0.1241610244774926,0.0895597738641329,16,10,16,10,42751,25696,,,,,,,,,,,
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lora,B cell,mean_cp10k,3277,0.2123530837921767,0.155728700025886,0.1955435088400365,0.1345373174346473,16,10,16,10,5672,2188,,,,,,,,,,,
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lora,B cell,pseudobulk_log1p_cpm,3277,0.0168944729630111,0.0670850971245842,0.0143950980190898,0.0378939474485694,16,10,16,10,5672,2188,,,,,,,,,,,
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lora,Monocyte,mean_cp10k,3152,0.3073799339851342,0.3756792743147539,0.2237049741343562,0.2900754043295747,16,10,16,10,28874,6048,,,,,,,,,,,
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lora,Monocyte,pseudobulk_log1p_cpm,3152,0.2183570592265492,0.3378040786958531,0.1789582684593357,0.1536986087764373,16,10,16,10,28874,6048,,,,,,,,,,,
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lora,NK cell,mean_cp10k,3069,0.2652461874936362,0.2533010131298753,0.2373055391306432,0.1512913963394132,16,10,16,10,14784,2773,,,,,,,,,,,
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lora,NK cell,pseudobulk_log1p_cpm,3069,0.0992852418625769,0.1357496033139099,0.0933443625074492,0.0510158032403955,16,10,16,10,14784,2773,,,,,,,,,,,
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lora,T cell,welch_top50_deg,5752,,,,,16,10,16,10,42751,25696,True,0.0,0.0,50.0,0.0,2050.0,0.0,4.0,0.0571428571428571,24.0,24.0
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lora,B cell,welch_top50_deg,5752,,,,,16,10,16,10,5672,2188,True,0.0,0.0,50.0,1.0,94.0,1.0,1.0,0.0136986301369863,24.0,24.0
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lora,Monocyte,welch_top50_deg,5752,,,,,16,10,16,10,28874,6048,True,0.0,0.0,50.0,3.0,266.0,3.0,0.0,0.0,24.0,24.0
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lora,NK cell,welch_top50_deg,5752,,,,,16,10,16,10,14784,2773,True,0.0,0.0,50.0,0.0,397.0,0.0,0.0,0.0,24.0,24.0
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| 14 |
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lora,DC,welch_top50_deg,5752,,,,,14,10,16,10,1112,901,True,0.0,0.0,50.0,9.0,58.0,9.0,0.0,0.0,24.0,24.0
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paper-releases/pbisc-diffusion/updates/20261015T121654Z-x1-nine-core40-deck/diffusion/dataset/server_1/model8/plans/paper_figures_strictpairs_20261012/recoveries/x1_priority_completion_20261015/evaluation/units/ji2025_chili/disease/draw2/lora/score/per_donor.csv
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arm,donor,group,n_generated_cells,n_observed_cells,n_reference_cells,gen_T cell,obs_T cell,gen_B cell,obs_B cell,gen_Monocyte,obs_Monocyte,gen_NK cell,obs_NK cell,gen_DC,obs_DC,gen_Other,obs_Other,comp_l1,comp_l1_obs_loo_null,pb_r,pb_own_rank,pb_top1,precision,coverage,precision_depth_matched,coverage_depth_matched,mono_pct_gen,mono_pct_obs,median_umi_gen,median_umi_obs
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lora,N064_TOL,TOL,1500,2498,150,0.7626666666666667,0.6517213771016813,0.0906666666666666,0.044035228182546,0.046,0.1677341873498799,0.034,0.0760608486789431,0.0346666666666666,0.010008006405124,0.032,0.0504403522818254,0.3644707766212971,0.4406688563206211,0.8354300049890867,8,False,0.98,0.7933333333333333,0.94,0.94,4.6,16.77341873498799,664.0,662.0
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lora,N064_FU1,FU1,1500,4659,150,0.886,0.6396222365314446,0.0346666666666666,0.0165271517493024,0.034,0.1386563640266151,0.0293333333333333,0.1916720326250268,0.0053333333333333,0.0047220433569435,0.0106666666666666,0.0088001717106675,0.5339901266366173,0.447147467447507,0.8309924948083618,6,False,0.94,0.46,0.96,0.8533333333333334,3.4000000000000004,13.865636402661517,699.5,925.0
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lora,N038_BC,BC,1500,2801,150,0.4366666666666666,0.5608711174580507,0.0433333333333333,0.0046411995715815,0.2613333333333333,0.1656551231702963,0.178,0.2170653338093538,0.038,0.0342734737593716,0.0426666666666666,0.0174937522313459,0.3265395692014757,0.3913209350209281,0.867925803696685,5,False,0.98,0.58,0.98,0.9533333333333334,26.13333333333333,16.565512317029633,780.5,1317.0
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lora,N038_AC,AC,1500,3976,150,0.478,0.6830985915492958,0.066,0.0082997987927565,0.2493333333333333,0.1290241448692153,0.1313333333333333,0.1207243460764587,0.024,0.0319416498993963,0.0513333333333333,0.0269114688128772,0.4260804828973843,0.5093694384341356,0.8697230803742949,2,False,0.98,0.8666666666666667,0.9533333333333334,0.9866666666666668,24.933333333333334,12.90241448692153,738.5,910.5
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lora,N055_AC,AC,1500,4308,150,0.4766666666666667,0.340297121634169,0.0586666666666666,0.0779944289693593,0.3093333333333333,0.324744661095636,0.0853333333333333,0.2051996285979573,0.0193333333333333,0.0060352831940575,0.0506666666666666,0.0457288765088208,0.3092107706592386,0.2683259872552967,0.86234255455375,8,False,0.9666666666666668,0.6333333333333333,0.92,0.86,30.933333333333334,32.47446610956361,743.0,1139.5
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| 7 |
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lora,N136_TOL,TOL,1500,759,150,0.7253333333333334,0.4861660079051383,0.0473333333333333,0.1001317523056653,0.128,0.1910408432147562,0.022,0.0922266139657444,0.0146666666666666,0.0013175230566534,0.0626666666666666,0.1291172595520421,0.5050329380764162,0.3440190413647225,0.8377987311810621,10,False,0.94,0.2333333333333333,0.9066666666666666,0.8666666666666667,12.8,19.104084321475625,636.0,1837.0
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| 8 |
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lora,N136_FU1,FU1,1500,2927,150,0.7246666666666667,0.4246668944311582,0.0553333333333333,0.147249743764947,0.1326666666666666,0.193372053296891,0.0186666666666666,0.0953194396993508,0.026,0.0023915271609156,0.0426666666666666,0.1370003416467372,0.6472164901491858,0.410613532351375,0.83478635551505,11,False,0.9733333333333334,0.66,0.9466666666666668,0.8733333333333333,13.266666666666666,19.3372053296891,712.0,1501.0
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| 9 |
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lora,N138_TOL,TOL,1500,5129,150,0.7786666666666666,0.1380386040163774,0.072,0.0280756482745174,0.044,0.5878338857477091,0.0066666666666666,0.1770325599532072,0.0266666666666666,0.0060440631702086,0.072,0.0629752388379801,1.4283995580684992,0.7733211231673002,0.8008711143495526,26,False,0.9866666666666668,0.56,0.9066666666666666,0.6666666666666666,4.4,58.78338857477091,555.0,1117.0
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| 10 |
+
lora,N138_FU1,FU1,1500,2107,150,0.4286666666666666,0.2728998576174656,0.05,0.0484100616990982,0.4033333333333333,0.4831514000949217,0.0586666666666666,0.1134314190792596,0.0146666666666666,0.0052206929283341,0.0446666666666666,0.0768865685809207,0.3336054421768707,0.5540453704150132,0.8580152517513925,14,False,0.9733333333333334,0.4333333333333333,0.9466666666666668,0.7,40.33333333333333,48.31514000949217,735.5,1446.0
|
| 11 |
+
lora,N128_BC,BC,1500,3902,150,0.7026666666666667,0.5158892875448488,0.092,0.0681701691440287,0.0846666666666666,0.2942080984110712,0.0213333333333333,0.0784213223987698,0.0506666666666666,0.0333162480779087,0.0486666666666666,0.0099948744233726,0.5332588416196823,0.2212623556602586,0.8477476204550844,6,False,0.9333333333333332,0.7133333333333334,0.9066666666666666,0.96,8.466666666666667,29.420809841107125,683.0,1088.0
|
| 12 |
+
lora,N128_AC,AC,1500,2713,150,0.7086666666666667,0.5488389237007003,0.084,0.0652414301511242,0.076,0.2790269074824917,0.0433333333333333,0.070770364909694,0.036,0.0294876520457058,0.052,0.0066347217102838,0.4609278781177048,0.2432845760645878,0.8471313088797809,7,False,0.96,0.6466666666666666,0.94,0.96,7.6,27.90269074824917,677.5,1181.0
|
| 13 |
+
lora,N129_BC,BC,1500,3087,150,0.634,0.5963718820861678,0.0713333333333333,0.1130547457078069,0.146,0.0835762876579203,0.072,0.1814058956916099,0.0393333333333333,0.0132815030774214,0.0373333333333333,0.0123096857790735,0.3022546161321672,0.4599645175272137,0.8558005014428223,5,False,0.9466666666666668,0.68,0.92,0.96,14.6,8.35762876579203,766.5,1059.0
|
| 14 |
+
lora,N129_AC,AC,1500,2798,150,0.6273333333333333,0.7076483202287348,0.0886666666666666,0.0493209435310936,0.1106666666666666,0.079699785561115,0.08,0.1336669049320943,0.0506666666666666,0.0228734810578985,0.0426666666666666,0.0067905646890636,0.2679637836549917,0.5428317542586936,0.8556391441615642,3,False,0.96,0.92,0.9666666666666668,0.9866666666666668,11.066666666666666,7.969978556111508,696.0,759.0
|
| 15 |
+
lora,N150_BC,BC,1500,2433,150,0.5106666666666667,0.802301685162351,0.036,0.02301685162351,0.2186666666666666,0.1385121249486231,0.1933333333333333,0.021783806000822,0.02,0.0057542129058775,0.0213333333333333,0.0086313193588162,0.5832700369913687,0.7041534876493698,0.8762710042905165,1,True,0.98,0.4733333333333333,0.98,0.9733333333333334,21.866666666666667,13.851212494862311,876.0,1629.0
|
| 16 |
+
lora,N158_AC,AC,1500,3749,150,0.524,0.2461989863963723,0.034,0.0266737796745798,0.3133333333333333,0.6295012003200854,0.072,0.0493464923979727,0.038,0.0248066150973592,0.0186666666666666,0.0234729261136303,0.6419482528674314,0.7651609044087362,0.8643439437848688,6,False,0.98,0.8133333333333334,0.9666666666666668,0.9533333333333334,31.333333333333336,62.95012003200854,1179.0,1047.0
|
| 17 |
+
lora,N159_BC,BC,1500,3779,150,0.8113333333333334,0.6996559936491136,0.0253333333333333,0.0185234188938872,0.064,0.0812384228631913,0.0526666666666666,0.173590897062715,0.0226666666666666,0.0140248743053717,0.024,0.012966393225721,0.2763253065184792,0.5299123518003033,0.8460918271153207,1,True,0.9333333333333332,0.8133333333333334,0.9333333333333332,0.9333333333333332,6.4,8.123842286319132,1165.5,1045.0
|
| 18 |
+
lora,N001_TOL,TOL,1500,5658,150,0.7033333333333334,0.51926475786497,0.048,0.0337575114881583,0.1246666666666666,0.2106751502297631,0.0753333333333333,0.2163308589607635,0.0113333333333333,0.0037115588547189,0.0373333333333333,0.016260162601626,0.4540120183810534,0.223121184837707,0.8366585697582325,15,False,0.9733333333333334,0.5133333333333333,0.9466666666666668,0.8533333333333334,12.466666666666669,21.06751502297632,663.5,787.5
|
| 19 |
+
lora,N001_FU1,FU1,1500,4547,150,0.482,0.2960193534198372,0.038,0.0657576424015834,0.3046666666666666,0.4882340004398504,0.1433333333333333,0.135913789311634,0.012,0.0010996261271167,0.02,0.012975588299978,0.4226499523495345,0.4496582811729592,0.8697814311659098,10,False,0.9866666666666668,0.3133333333333333,0.96,0.7333333333333333,30.466666666666665,48.823400043985046,950.5,1165.0
|
| 20 |
+
lora,N002_TOL,TOL,1500,6318,150,0.6706666666666666,0.4157961380183602,0.076,0.0577714466603355,0.1113333333333333,0.3779677113010446,0.0906666666666666,0.1179170623615068,0.0273333333333333,0.0201012978790756,0.024,0.0104463437796771,0.5877695473251028,0.2485688582152307,0.8402795265272268,13,False,0.9666666666666668,0.5866666666666667,0.94,0.92,11.133333333333336,37.79677113010446,859.5,933.5
|
| 21 |
+
lora,N002_FU1,FU1,1500,4975,150,0.832,0.316180904522613,0.0366666666666666,0.0727638190954773,0.048,0.4558793969849246,0.0713333333333333,0.1226130653266331,0.0053333333333333,0.0227135678391959,0.0066666666666666,0.0098492462311557,1.0316381909547738,0.4367202956275878,0.8163000467543169,23,False,1.0,0.46,0.96,0.7066666666666667,4.8,45.58793969849246,1102.5,979.0
|
| 22 |
+
lora,N012_TOL,TOL,1500,6709,150,0.6293333333333333,0.3475927858101058,0.09,0.0788493069011775,0.1526666666666666,0.4672827545088687,0.0406666666666666,0.0857057683708451,0.0366666666666666,0.0005962140408406,0.0506666666666666,0.0199731703681621,0.719310379092761,0.4550105913719193,0.8401134254747072,14,False,0.9466666666666668,0.3,0.9466666666666668,0.76,15.266666666666667,46.72827545088687,691.0,1193.0
|
| 23 |
+
lora,N012_FU1,FU1,1500,4369,150,0.6886666666666666,0.3588921950102998,0.062,0.1924925612268253,0.1786666666666666,0.3126573586633097,0.034,0.1084916456855115,0.0126666666666666,0.0006866559853513,0.024,0.0267795834287022,0.6835089646753644,0.373046308332097,0.837459059323797,23,False,0.96,0.3533333333333333,0.9533333333333334,0.8,17.866666666666667,31.265735866330967,762.0,1299.0
|
| 24 |
+
lora,N022_TOL,TOL,1500,3651,150,0.5226666666666666,0.4864420706655711,0.0473333333333333,0.0369761709120788,0.2713333333333333,0.0457408929060531,0.0993333333333333,0.4182415776499589,0.0126666666666666,0.0,0.0466666666666666,0.0125992878663379,0.6378164886332511,0.6009038417749315,0.8410554409244736,25,False,0.96,0.1533333333333333,0.92,0.9266666666666666,27.133333333333333,4.574089290605313,693.0,1410.0
|
| 25 |
+
lora,N022_FU1,FU1,1500,2463,150,0.7706666666666667,0.4847746650426309,0.0406666666666666,0.0487210718635809,0.0566666666666666,0.2025984571660576,0.098,0.2533495736906211,0.006,0.0,0.028,0.0105562322371092,0.6186715387738531,0.2677850226103757,0.841010865287788,10,False,0.98,0.2666666666666666,0.9466666666666668,0.8466666666666667,5.666666666666666,20.259845716605763,625.0,1459.0
|
| 26 |
+
lora,N043_TOL,TOL,1500,2074,150,0.8813333333333333,0.3548698167791707,0.0226666666666666,0.0573770491803278,0.0473333333333333,0.0458052073288331,0.0353333333333333,0.4811957569913211,0.002,0.0028929604628736,0.0113333333333333,0.0578592092574734,1.0559832851173256,0.7271203177048906,0.8295141719489975,14,False,0.98,0.24,0.92,0.8533333333333334,4.733333333333333,4.580520732883317,828.5,1315.5
|
| 27 |
+
lora,N043_FU1,FU1,1500,3437,150,0.734,0.1638056444573756,0.048,0.0677916787896421,0.1153333333333333,0.5728833284841431,0.062,0.148967122490544,0.014,0.0034914169333721,0.0266666666666666,0.0430608088449228,1.1614058772185043,0.6515440045178634,0.8334111847356421,24,False,0.9733333333333334,0.22,0.96,0.6266666666666667,11.533333333333331,57.28833284841431,779.0,1422.0
|
paper-releases/pbisc-diffusion/updates/20261015T121654Z-x1-nine-core40-deck/diffusion/dataset/server_1/model8/plans/paper_figures_strictpairs_20261012/recoveries/x1_priority_completion_20261015/evaluation/units/ji2025_chili/disease/draw2/lora/score/summary.json
ADDED
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| 1 |
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{
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| 2 |
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| 3 |
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|
| 4 |
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| 5 |
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|
| 6 |
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| 7 |
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|
| 8 |
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| 9 |
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|
| 10 |
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|
| 11 |
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|
| 12 |
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| 13 |
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| 14 |
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| 17 |
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| 18 |
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| 23 |
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