Archive 4 checkpoints (1-4)

paper-releases/pbisc-diffusion/updates/20261006T033847Z-bulkonly-lora5-k4000/diffusion/dataset/server_1/model8/plans/bulkonly_lora5_k4000_20261006/analysis/benchmark/imperial_eskd/aggregate.json

@@ -0,0 +1,228 @@
+{
+ "dataset": "imperial_eskd",
+ "draws": [
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+  1,
+  2,
+  3,
+  4
+ ],
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+   "logfc_partial_r": [
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+ "paired_over_draws": {
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+   "draws_better": 2,
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+  "logfc_r_broadcast": {
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+  "logfc_partial_r": {
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+   "draws_better": 2,
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+ "scorer_check_vs_benchmark": {
+  "draw0": {
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+   "max_abs_diff": 0.0
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+  "draw1": {
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+  "draw2": {
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+  "draw3": {
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+   "max_abs_diff": 0.0
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+  "draw4": {
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+ },
+ "comp_l1_per_donor_draw": {
+  "mean_diff": -0.015765712042569147,
+  "frac_k4000_better": 0.5594405594405595,
+  "wilcoxon_p": 2.4130679153464384e-05,
+  "n": 715
+ }
+}

paper-releases/pbisc-diffusion/updates/20261006T033847Z-bulkonly-lora5-k4000/diffusion/dataset/server_1/model8/plans/bulkonly_lora5_k4000_20261006/analysis/benchmark/imperial_eskd/per_draw.csv

@@ -0,0 +1,11 @@
+draw,arm,comp_l1,precision,coverage,coverage_dm,pb_r_median,mono_pct_gen,mono_pct_obs,median_umi_gen,median_umi_obs,deg_top50_sum,deg_top50_sum_broadcast,logfc_r_gen,logfc_r_broadcast,logfc_partial_r,logfc_r_T,logfc_r_B,logfc_r_Monocyte,logfc_r_NK
+0,lora5,0.478123841402283,0.8608470588235294,0.7569882352941176,0.8848,0.8742149849084618,17.830516431924885,16.452413804761996,1163.0,1356.0,116,71,0.7798976158583719,0.6675205927010471,0.6572469324283057,0.8142843730190665,0.7163325618485334,0.810939856544121,0.7780336720217669
+0,lora5_k4000,0.45422191039305965,0.855764705882353,0.7515764705882353,0.8854588235294117,0.8743551204807356,18.10704225352113,16.452413804761996,1149.0,1356.0,122,71,0.7821247585137376,0.6675205927010471,0.6648610760742939,0.8167249557412583,0.7226741798643261,0.8076279810825882,0.7814719173667777
+1,lora5,0.5160151799648663,0.8449637765833139,0.7829399392381398,0.8706239775648515,0.8694390566792582,14.095104895104893,17.000072050147295,1249.0,1338.0,119,86,0.7570901930571807,0.6611787175621116,0.6045509566158934,0.840382478631967,0.6581147386346861,0.7452340753019923,0.7846294796600775
+1,lora5_k4000,0.514172186504626,0.8353820986211732,0.769572329983641,0.8622575368076654,0.8694038788048634,15.443356643356642,17.000072050147295,1235.0,1338.0,122,86,0.7553749956693036,0.6611787175621116,0.6095335345734808,0.8389627774390673,0.6818466522887147,0.7334089459284993,0.7672816070209326
+2,lora5,0.5117644876225123,0.8453749058025621,0.6650339110776187,0.8674642049736248,0.8618536720167342,18.06713615023474,16.205826518972017,1093.0,1372.0,103,65,0.7139546009415169,0.6433613217171205,0.5764372157359006,0.7743895219281159,0.6421883096352491,0.6975675744840075,0.7416729977186952
+2,lora5_k4000,0.5090921870486029,0.82620572720422,0.6098342125094197,0.8504144687264507,0.8614177170243328,18.664319248826292,16.205826518972017,1047.0,1372.0,110,65,0.7197837002971605,0.6433613217171205,0.5753101940878903,0.7912569091612014,0.6735733859909294,0.6989491293884019,0.7153553766481094
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+3,lora5_k4000,0.5088421399406102,0.8841435291947237,0.8354856563047689,0.9092334655474588,0.874724422555605,22.536091954022986,17.381107161241506,1362.0,1331.0,119,76,0.7387401711059427,0.6538959233815048,0.5919124591511977,0.830477983815028,0.587514380089862,0.730815978339781,0.8061523421790995
+4,lora5,0.48142813711177446,0.8319146946029371,0.6369376110747358,0.789589374240015,0.8718175652167901,17.166899766899768,17.567899313806723,1008.0,1367.0,113,76,0.7492433446082651,0.6565426449733607,0.575230848198632,0.8059045624765077,0.7163924713709098,0.7373071097010572,0.7373692348845863
+4,lora5_k4000,0.4497700412559653,0.828453839678234,0.6390421850154335,0.7884669348049761,0.8727484381272462,17.25034965034965,17.567899313806723,996.0,1367.0,106,76,0.7417677782057019,0.6565426449733607,0.5709024618887067,0.8045657833068549,0.7048747466915234,0.7132016461634106,0.7444289366610192

paper-releases/pbisc-diffusion/updates/20261006T033847Z-bulkonly-lora5-k4000/diffusion/dataset/server_1/model8/plans/bulkonly_lora5_k4000_20261006/analysis/benchmark/ye2026_sepsis/aggregate.json

@@ -0,0 +1,228 @@
+{
+ "dataset": "ye2026_sepsis",
+ "draws": [
+  0,
+  1,
+  2,
+  3,
+  4
+ ],
+ "arms": {
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+ "scorer_check_vs_benchmark": {
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+   "max_abs_diff": 0.0
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+ },
+ "comp_l1_per_donor_draw": {
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+  "frac_k4000_better": 0.574025974025974,
+  "wilcoxon_p": 0.005366835809964019,
+  "n": 385
+ }
+}

paper-releases/pbisc-diffusion/updates/20261006T033847Z-bulkonly-lora5-k4000/diffusion/dataset/server_1/model8/plans/bulkonly_lora5_k4000_20261006/analysis/benchmark/ye2026_sepsis/per_draw.csv

@@ -0,0 +1,11 @@
+draw,arm,comp_l1,precision,coverage,coverage_dm,pb_r_median,mono_pct_gen,mono_pct_obs,median_umi_gen,median_umi_obs,deg_top50_sum,deg_top50_sum_broadcast,logfc_r_gen,logfc_r_broadcast,logfc_partial_r,logfc_r_T,logfc_r_B,logfc_r_Monocyte,logfc_r_NK
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+1,lora5_k4000,0.46758247017655497,0.9318614718614718,0.680952380952381,0.8375757575757575,0.8808935192930942,34.874458874458874,20.312163040709393,2038.0,1955.0,16,20,0.13991485427567957,0.27941436238089834,0.044262957873484346,0.0245108330871732,0.1647371821614159,0.2974186398048584,0.0729927620492708
+2,lora5,0.4986968896699433,0.9184415584415584,0.7606060606060606,0.8434632034632035,0.8865113977735853,11.237229437229432,21.18539814075279,1840.0,1954.0,26,18,0.3272188119120809,0.3386821732452143,0.31447561738686153,0.3460304922471161,0.4057646869101112,0.2949463535526179,0.2621337149384785
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