Archive 4 checkpoints (1-4)
Browse files- paper-releases/pbisc-diffusion/updates/20261015T121654Z-x1-nine-core40-deck/diffusion/dataset/server_1/model8/plans/paper_figures_strictpairs_20261012/recoveries/x1_priority_completion_20261015/gpu_priority.py +68 -0
- paper-releases/pbisc-diffusion/updates/20261015T121654Z-x1-nine-core40-deck/diffusion/dataset/server_1/model8/plans/paper_figures_strictpairs_20261012/recoveries/x1_priority_completion_20261015/mirror_diffusion.py +331 -0
- paper-releases/pbisc-diffusion/updates/20261015T121654Z-x1-nine-core40-deck/diffusion/dataset/server_1/model8/plans/paper_figures_strictpairs_20261012/recoveries/x1_priority_completion_20261015/resume_x4.py +9 -0
- paper-releases/pbisc-diffusion/updates/20261015T121654Z-x1-nine-core40-deck/diffusion/dataset/server_1/model8/plans/paper_figures_strictpairs_20261012/runs/immicro/healthy/fold1/n40/lora/RUN.json +450 -0
paper-releases/pbisc-diffusion/updates/20261015T121654Z-x1-nine-core40-deck/diffusion/dataset/server_1/model8/plans/paper_figures_strictpairs_20261012/recoveries/x1_priority_completion_20261015/gpu_priority.py
ADDED
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@@ -0,0 +1,68 @@
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| 1 |
+
"""Own exactly nine x1 diffusion units; preserve x4 process and all in-flight children."""
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| 2 |
+
from pathlib import Path
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| 3 |
+
import os,sys,json,signal,subprocess,threading,fcntl,time
|
| 4 |
+
from concurrent.futures import ThreadPoolExecutor
|
| 5 |
+
R=Path(__file__).resolve().parent;S=R.parents[1];M=S.parents[1];X=M/'plans/f01_trunk4x_complete_20261013'
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| 6 |
+
sys.path[:0]=[str(S/'tools'),str(X/'tools')]
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| 7 |
+
import campaign
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| 8 |
+
from runtime import Runtime,atomic_json,stamp
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| 9 |
+
from dual_runtime import RemoteRuntime,ssh
|
| 10 |
+
from two_host_resume import unit_support
|
| 11 |
+
LOCK=threading.Lock();STOP=threading.Event()
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| 12 |
+
def state(**kw):
|
| 13 |
+
with LOCK:
|
| 14 |
+
f=R/'GPU_STATUS.json';j=json.loads(f.read_text()) if f.exists() else {'completed':[],'running':{}}
|
| 15 |
+
j.update(kw,at=stamp());atomic_json(f,j)
|
| 16 |
+
class RemoteX1(RemoteRuntime):
|
| 17 |
+
def execute(self,name,argv,**kw):
|
| 18 |
+
self.pending_outputs=[str(p) for p in kw.get('outputs',[])]
|
| 19 |
+
return super().execute(name,argv,**kw)
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| 20 |
+
def wrapped_command(self,name,argv,resource,memory_gib,threads):
|
| 21 |
+
command=super().wrapped_command(name,argv,resource,memory_gib,threads)
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| 22 |
+
req=R/'transport'/f'{name}.json'
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| 23 |
+
atomic_json(req,{'command':command,'outputs':self.pending_outputs,'receipt':str(req.with_suffix('.verified.json'))})
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| 24 |
+
return [sys.executable,str(R/'transport.py'),str(req)]
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| 25 |
+
def execution_metadata(self,argv=None,command=None):
|
| 26 |
+
j=super().execution_metadata(argv,command);j['canonical_output_transfer']='Verified remote SHA256 -> server_1';return j
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| 27 |
+
|
| 28 |
+
def main():
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| 29 |
+
units=json.loads((R/'GPU_UNITS.json').read_text());owners=json.loads((R/'OWNERS.json').read_text())
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| 30 |
+
assert len(units)==len(set(units))==9 and set(units)==set(owners)
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| 31 |
+
audit=json.loads((R/'reuse/REUSE_AUDIT.json').read_text())
|
| 32 |
+
assert audit['state']=='pass_no_exact_reuse_found' and {u['unit'] for u in audit['units']}==set(units)
|
| 33 |
+
with (S/'.campaign.lock').open('a') as lock:
|
| 34 |
+
fcntl.flock(lock,fcntl.LOCK_EX|fcntl.LOCK_NB)
|
| 35 |
+
matches=[]
|
| 36 |
+
for proc in Path('/proc').iterdir():
|
| 37 |
+
if not proc.name.isdigit():continue
|
| 38 |
+
try:argv=proc.joinpath('cmdline').read_bytes().split(b'\0')
|
| 39 |
+
except (FileNotFoundError,ProcessLookupError,PermissionError):continue
|
| 40 |
+
if argv[0].endswith(b'/python') and str(X/'tools/downstream.py').encode() in argv:matches.append(proc)
|
| 41 |
+
assert len(matches)==1,[(p.name,(p/'cmdline').read_bytes()) for p in matches]
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| 42 |
+
proc=matches[0];j={'pid':int(proc.name),'start_ticks':(proc/'stat').read_text().split()[21],'cmdline':(proc/'cmdline').read_bytes().decode().replace('\0',' '),'at':stamp(),'scope':'Coordinator only; active systemd/SSH compute children continue; receipt wall_seconds includes pause'}
|
| 43 |
+
atomic_json(R/'X4_PAUSE.json',j);os.kill(j['pid'],signal.SIGSTOP);state(phase='x1_priority_x4_scheduler_suspended')
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| 44 |
+
def lane(host):
|
| 45 |
+
rt=Runtime(S) if host=='server_1' else RemoteX1(S)
|
| 46 |
+
for u in units:
|
| 47 |
+
if STOP.is_set():return
|
| 48 |
+
if owners[u]!=host:continue
|
| 49 |
+
try:
|
| 50 |
+
with LOCK:
|
| 51 |
+
q=json.loads((R/'GPU_STATUS.json').read_text());q['running'][host]=u;q['at']=stamp();atomic_json(R/'GPU_STATUS.json',q)
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| 52 |
+
path,_,support=unit_support(S,u);campaign.run_diffusion(rt,path)
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| 53 |
+
atomic_json(R/'units'/f'{u}.json',{'state':'diffusion_completed','host':host,'support_sha256':support['sha256'],'at':stamp(),'scsemi':'separate existing protocol; not required to finish PBISC x1 generation'})
|
| 54 |
+
with LOCK:
|
| 55 |
+
q=json.loads((R/'GPU_STATUS.json').read_text());q['completed'].append(u);q['running'].pop(host,None);q['at']=stamp();atomic_json(R/'GPU_STATUS.json',q)
|
| 56 |
+
except BaseException:
|
| 57 |
+
STOP.set();raise
|
| 58 |
+
with ThreadPoolExecutor(max_workers=2) as pool:
|
| 59 |
+
futures=[pool.submit(lane,h) for h in ['server_1','server_2']]
|
| 60 |
+
for f in futures:f.result()
|
| 61 |
+
state(phase='all_nine_diffusion_completed')
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| 62 |
+
|
| 63 |
+
def terminated(*_):raise SystemExit('Controller stop requested; x4 resumed in finally')
|
| 64 |
+
if __name__=='__main__':
|
| 65 |
+
signal.signal(signal.SIGTERM,terminated);signal.signal(signal.SIGINT,terminated)
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| 66 |
+
try:main()
|
| 67 |
+
except BaseException as e:state(phase='stopped_needs_inspection',error=str(e));raise
|
| 68 |
+
finally:subprocess.run([sys.executable,str(R/'resume_x4.py')],check=True)
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paper-releases/pbisc-diffusion/updates/20261015T121654Z-x1-nine-core40-deck/diffusion/dataset/server_1/model8/plans/paper_figures_strictpairs_20261012/recoveries/x1_priority_completion_20261015/mirror_diffusion.py
ADDED
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@@ -0,0 +1,331 @@
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|
| 1 |
+
#!/usr/bin/env python3
|
| 2 |
+
"""Mirror exactly nine finished x1 diffusion units, with no training or generation.
|
| 3 |
+
|
| 4 |
+
The original Runtime.can_skip contract is replayed on both hosts. Existing
|
| 5 |
+
different files are preserved, never replaced. Run --self-test during compute;
|
| 6 |
+
the default action refuses to transfer before all nine GPU units are complete.
|
| 7 |
+
"""
|
| 8 |
+
from __future__ import annotations
|
| 9 |
+
|
| 10 |
+
import argparse
|
| 11 |
+
from contextlib import contextmanager
|
| 12 |
+
from datetime import datetime, timezone
|
| 13 |
+
import fcntl
|
| 14 |
+
import hashlib
|
| 15 |
+
import json
|
| 16 |
+
import os
|
| 17 |
+
from pathlib import Path
|
| 18 |
+
import shlex
|
| 19 |
+
import subprocess
|
| 20 |
+
import sys
|
| 21 |
+
import tempfile
|
| 22 |
+
import unittest
|
| 23 |
+
|
| 24 |
+
R = Path(__file__).resolve().parent
|
| 25 |
+
S = R.parents[1]
|
| 26 |
+
DEST = R / 'mirror'
|
| 27 |
+
REMOTE_PY = '/home/sj_server_2/miniforge3/envs/b2sc-infer/bin/python'
|
| 28 |
+
CPU_PY = '/home/sj_server_1/miniforge3/envs/cxg_corpus/bin/python'
|
| 29 |
+
HOST = 'spark-0110'
|
| 30 |
+
UNITS = [f'ji2025_chili-disease-draw{i}' for i in (2, 3, 4)] + [
|
| 31 |
+
f'immicro-healthy-fold{fold}-n{n}' for fold in (0, 1) for n in (10, 20, 40)]
|
| 32 |
+
SSH = ['ssh', '-o', 'BatchMode=yes', '-o', 'ConnectTimeout=15',
|
| 33 |
+
'-o', 'ServerAliveInterval=15', '-o', 'ServerAliveCountMax=3', HOST]
|
| 34 |
+
|
| 35 |
+
|
| 36 |
+
def digest(path: Path) -> str:
|
| 37 |
+
with path.open('rb') as f:
|
| 38 |
+
return hashlib.file_digest(f, 'sha256').hexdigest()
|
| 39 |
+
|
| 40 |
+
|
| 41 |
+
def encoded(value: object) -> bytes:
|
| 42 |
+
return (json.dumps(value, indent=2, sort_keys=True, allow_nan=False) + '\n').encode()
|
| 43 |
+
|
| 44 |
+
|
| 45 |
+
def once(path: Path, data: bytes) -> None:
|
| 46 |
+
"""Atomic create only; accept exact bytes on a repeated invocation."""
|
| 47 |
+
path.parent.mkdir(parents=True, exist_ok=True)
|
| 48 |
+
if path.exists() or path.is_symlink():
|
| 49 |
+
if path.is_symlink() or not path.is_file() or path.read_bytes() != data:
|
| 50 |
+
raise RuntimeError(f'Existing different file preserved: {path}')
|
| 51 |
+
return
|
| 52 |
+
fd, name = tempfile.mkstemp(prefix='.mirror-', dir=path.parent)
|
| 53 |
+
temp = Path(name)
|
| 54 |
+
try:
|
| 55 |
+
with os.fdopen(fd, 'wb') as f:
|
| 56 |
+
f.write(data)
|
| 57 |
+
f.flush()
|
| 58 |
+
os.fsync(f.fileno())
|
| 59 |
+
try:
|
| 60 |
+
os.link(temp, path)
|
| 61 |
+
except FileExistsError:
|
| 62 |
+
if path.is_symlink() or path.read_bytes() != data:
|
| 63 |
+
raise RuntimeError(f'Concurrent different file preserved: {path}') from None
|
| 64 |
+
finally:
|
| 65 |
+
temp.unlink(missing_ok=True)
|
| 66 |
+
|
| 67 |
+
|
| 68 |
+
def ssh_python(code: str, args: list[str] | None = None,
|
| 69 |
+
data: object | None = None) -> str:
|
| 70 |
+
argv = [REMOTE_PY, '-c', code, *(args or [])]
|
| 71 |
+
return subprocess.check_output(SSH + [shlex.join(argv)], text=True,
|
| 72 |
+
input=None if data is None else json.dumps(data))
|
| 73 |
+
|
| 74 |
+
|
| 75 |
+
@contextmanager
|
| 76 |
+
def locks():
|
| 77 |
+
"""Both original worker locks stay held throughout copying and skip proof."""
|
| 78 |
+
with (S / '.campaign.lock').open('a') as local:
|
| 79 |
+
fcntl.flock(local, fcntl.LOCK_EX | fcntl.LOCK_NB)
|
| 80 |
+
code = ('import fcntl,sys; f=open(sys.argv[1],"a"); '
|
| 81 |
+
'fcntl.flock(f,fcntl.LOCK_EX|fcntl.LOCK_NB); '
|
| 82 |
+
'print("LOCKED",flush=True); sys.stdin.read()')
|
| 83 |
+
process = subprocess.Popen(SSH + [shlex.join([REMOTE_PY, '-c', code,
|
| 84 |
+
str(S / '.campaign.lock')])],
|
| 85 |
+
text=True, stdin=subprocess.PIPE,
|
| 86 |
+
stdout=subprocess.PIPE, stderr=subprocess.PIPE)
|
| 87 |
+
try:
|
| 88 |
+
assert process.stdout is not None
|
| 89 |
+
if process.stdout.readline().strip() != 'LOCKED':
|
| 90 |
+
error = process.stderr.read() if process.stderr else ''
|
| 91 |
+
raise RuntimeError('Remote campaign lock unavailable: ' + error)
|
| 92 |
+
yield
|
| 93 |
+
if process.poll() is not None:
|
| 94 |
+
raise RuntimeError('Remote lock session ended before verification')
|
| 95 |
+
finally:
|
| 96 |
+
if process.stdin:
|
| 97 |
+
process.stdin.close()
|
| 98 |
+
try:
|
| 99 |
+
code = process.wait(timeout=20)
|
| 100 |
+
except subprocess.TimeoutExpired:
|
| 101 |
+
process.terminate()
|
| 102 |
+
code = process.wait(timeout=10)
|
| 103 |
+
if code and sys.exc_info()[0] is None:
|
| 104 |
+
raise RuntimeError(f'Remote lock session failed: {code}')
|
| 105 |
+
|
| 106 |
+
|
| 107 |
+
def relative(unit: str) -> Path:
|
| 108 |
+
if unit not in UNITS:
|
| 109 |
+
raise ValueError('Outside the exact requested nine units')
|
| 110 |
+
for p in (S / 'protocol/splits').glob('**/support.json'):
|
| 111 |
+
rel = p.relative_to(S / 'protocol/splits').parent
|
| 112 |
+
if '-'.join(rel.parts) == unit:
|
| 113 |
+
return rel
|
| 114 |
+
raise ValueError('Missing support manifest: ' + unit)
|
| 115 |
+
|
| 116 |
+
|
| 117 |
+
def output_contract(unit: str, suffix: str) -> list[Path]:
|
| 118 |
+
rel = relative(unit)
|
| 119 |
+
if suffix == 'train':
|
| 120 |
+
return [S / 'runs' / rel / 'lora/checkpoint_ft.pt',
|
| 121 |
+
S / 'runs' / rel / 'lora/RUN.json']
|
| 122 |
+
if suffix not in ('lora', 'pairedcal'):
|
| 123 |
+
raise ValueError('Unknown diffusion operation')
|
| 124 |
+
return [S / 'generated' / rel / f'{suffix}.npz',
|
| 125 |
+
S / 'generated' / rel / f'{suffix}.log']
|
| 126 |
+
|
| 127 |
+
|
| 128 |
+
def validate_completed(record: dict, expected: list[Path]) -> None:
|
| 129 |
+
if record.get('state') != 'completed' or not record.get('signature'):
|
| 130 |
+
raise RuntimeError('Only signed completed receipts can be mirrored')
|
| 131 |
+
outputs = record.get('outputs', [])
|
| 132 |
+
if [row.get('path') for row in outputs] != [str(p.resolve()) for p in expected]:
|
| 133 |
+
raise RuntimeError('Receipt output contract differs from exact nine-unit scope')
|
| 134 |
+
if any(not isinstance(x.get('sha256'), str) or len(x['sha256']) != 64 for x in outputs):
|
| 135 |
+
raise RuntimeError('Receipt lacks output SHA256')
|
| 136 |
+
|
| 137 |
+
|
| 138 |
+
PROBE = '''from pathlib import Path
|
| 139 |
+
import sys,json
|
| 140 |
+
S=Path(sys.argv[1]);units=json.loads(sys.argv[2]);sys.path.insert(0,str(S/'tools'))
|
| 141 |
+
import campaign
|
| 142 |
+
from runtime import Runtime
|
| 143 |
+
class Probe(Runtime):
|
| 144 |
+
def __init__(self,root):super().__init__(root);self.results=[]
|
| 145 |
+
def execute(self,name,argv,**kw):
|
| 146 |
+
sig=self.signature(argv,kw.get('inputs',[]))
|
| 147 |
+
if not self.can_skip(name,sig,kw.get('outputs',[])):
|
| 148 |
+
raise RuntimeError('Would launch an operation; no execution allowed: '+name)
|
| 149 |
+
self.results.append({'operation':name,'signature':sig,'verified_skip':True})
|
| 150 |
+
return False
|
| 151 |
+
def preflight(self,*args,**kw):raise AssertionError('Probe must never launch compute')
|
| 152 |
+
def wrapped_command(self,*args,**kw):raise AssertionError('Probe must never create a command')
|
| 153 |
+
rt=Probe(S)
|
| 154 |
+
for unit in units:
|
| 155 |
+
matches=[p for p in campaign.discover_units() if campaign.name(p)==unit]
|
| 156 |
+
assert len(matches)==1
|
| 157 |
+
campaign.run_diffusion(rt,matches[0])
|
| 158 |
+
assert len(rt.results)==27 and len({x['operation'] for x in rt.results})==27
|
| 159 |
+
print(json.dumps({'state':'verified_skip_only','operations':rt.results,'gpu_launched':False}))
|
| 160 |
+
'''
|
| 161 |
+
|
| 162 |
+
|
| 163 |
+
def source_probe() -> dict:
|
| 164 |
+
env = dict(os.environ, CUDA_VISIBLE_DEVICES='', PYTHONDONTWRITEBYTECODE='1',
|
| 165 |
+
OPENBLAS_NUM_THREADS='1', OMP_NUM_THREADS='1')
|
| 166 |
+
return json.loads(subprocess.check_output([CPU_PY, '-c', PROBE,
|
| 167 |
+
str(S), json.dumps(UNITS)], env=env, text=True))
|
| 168 |
+
|
| 169 |
+
|
| 170 |
+
REMOTE_STAT = '''from pathlib import Path
|
| 171 |
+
import sys,json,hashlib
|
| 172 |
+
out={}
|
| 173 |
+
for raw in json.load(sys.stdin):
|
| 174 |
+
p=Path(raw)
|
| 175 |
+
if p.is_symlink():raise RuntimeError('Symlink target preserved: '+raw)
|
| 176 |
+
if not p.exists():out[raw]=None;continue
|
| 177 |
+
if not p.is_file():raise RuntimeError('Non-file target preserved: '+raw)
|
| 178 |
+
st=p.stat();out[raw]={'path':str(p.resolve()),'bytes':st.st_size,'mtime_ns':st.st_mtime_ns,'sha256':hashlib.file_digest(p.open('rb'),'sha256').hexdigest()}
|
| 179 |
+
print(json.dumps(out))
|
| 180 |
+
'''
|
| 181 |
+
|
| 182 |
+
|
| 183 |
+
INSTALL = '''from pathlib import Path
|
| 184 |
+
import sys,os,hashlib,json
|
| 185 |
+
src=Path(sys.argv[1]);dst=Path(sys.argv[2]);expected=sys.argv[3]
|
| 186 |
+
def sha(p):return hashlib.file_digest(p.open('rb'),'sha256').hexdigest()
|
| 187 |
+
assert src.is_file() and not src.is_symlink() and sha(src)==expected
|
| 188 |
+
dst.parent.mkdir(parents=True,exist_ok=True)
|
| 189 |
+
try:os.link(src,dst)
|
| 190 |
+
except FileExistsError:
|
| 191 |
+
assert dst.is_file() and not dst.is_symlink() and sha(dst)==expected,'Conflicting destination preserved: '+str(dst)
|
| 192 |
+
assert sha(dst)==expected
|
| 193 |
+
src.unlink()
|
| 194 |
+
print(json.dumps({'state':'verified','path':str(dst),'sha256':expected}))
|
| 195 |
+
'''
|
| 196 |
+
|
| 197 |
+
|
| 198 |
+
def copy_if_missing(source: Path, target: Path, expected: str, known: dict | None) -> None:
|
| 199 |
+
if known is not None:
|
| 200 |
+
if known['sha256'] != expected:
|
| 201 |
+
raise RuntimeError('Conflicting remote file preserved: ' + str(target))
|
| 202 |
+
return
|
| 203 |
+
staging = DEST / 'staging' / (hashlib.sha256(str(target).encode()).hexdigest() + '-' + expected)
|
| 204 |
+
ssh_python('from pathlib import Path; import sys; Path(sys.argv[1]).mkdir(parents=True,exist_ok=True)',
|
| 205 |
+
[str(staging.parent)])
|
| 206 |
+
subprocess.run(['rsync', '-a', '--protect-args', str(source), HOST + ':' + str(staging)], check=True)
|
| 207 |
+
ssh_python(INSTALL, [str(staging), str(target), expected])
|
| 208 |
+
|
| 209 |
+
|
| 210 |
+
def normalize_receipt(record: dict, stats: dict, raw: Path, raw_sha: str) -> dict:
|
| 211 |
+
result = json.loads(json.dumps(record))
|
| 212 |
+
for output in result['outputs']:
|
| 213 |
+
actual = stats[output['path']]
|
| 214 |
+
if actual is None or actual['sha256'] != output['sha256'] or actual['bytes'] != output['bytes']:
|
| 215 |
+
raise RuntimeError('Destination payload differs from canonical source receipt')
|
| 216 |
+
output.update({key:actual[key] for key in ('path', 'bytes', 'mtime_ns')})
|
| 217 |
+
result['mirror_provenance'] = {
|
| 218 |
+
'schema': 'pbisc.strict9.diffusion-mirror.v1',
|
| 219 |
+
'source_receipt_host': 'server_1',
|
| 220 |
+
'source_receipt': str(raw),
|
| 221 |
+
'source_receipt_sha256': raw_sha,
|
| 222 |
+
'destination_host': 'server_2',
|
| 223 |
+
'normalization': 'Destination output path, bytes and mtime_ns only; original execution metadata and signature preserved'}
|
| 224 |
+
return result
|
| 225 |
+
|
| 226 |
+
|
| 227 |
+
def main() -> None:
|
| 228 |
+
status = json.loads((R / 'GPU_STATUS.json').read_text())
|
| 229 |
+
if (status.get('phase') != 'all_nine_diffusion_completed' or
|
| 230 |
+
set(status.get('completed', [])) != set(UNITS) or
|
| 231 |
+
len(status.get('completed', [])) != 9):
|
| 232 |
+
raise RuntimeError('Nine GPU units have not all completed; no transfer attempted')
|
| 233 |
+
if set(json.loads((R / 'GPU_UNITS.json').read_text())) != set(UNITS):
|
| 234 |
+
raise RuntimeError('GPU unit ownership differs from the exact requested nine')
|
| 235 |
+
audit = json.loads((R / 'reuse/REUSE_AUDIT.json').read_text())
|
| 236 |
+
if audit.get('state') != 'pass_no_exact_reuse_found':
|
| 237 |
+
raise RuntimeError('No passing reuse audit')
|
| 238 |
+
DEST.mkdir(parents=True, exist_ok=True)
|
| 239 |
+
with locks():
|
| 240 |
+
checked_source = source_probe()
|
| 241 |
+
once(DEST / 'SOURCE_PROBE.json', encoded(checked_source))
|
| 242 |
+
receipts=[]
|
| 243 |
+
outputs={}
|
| 244 |
+
for unit in UNITS:
|
| 245 |
+
for suffix in ('train', 'lora', 'pairedcal'):
|
| 246 |
+
name=f'{unit}-{suffix}'
|
| 247 |
+
path=S/'receipts'/f'{name}.json'
|
| 248 |
+
raw=DEST/'source_receipts'/path.name
|
| 249 |
+
blob=path.read_bytes();record=json.loads(blob)
|
| 250 |
+
validate_completed(record,output_contract(unit,suffix))
|
| 251 |
+
once(raw,blob)
|
| 252 |
+
receipts.append((name,record,raw,hashlib.sha256(blob).hexdigest()))
|
| 253 |
+
for output in record['outputs']:
|
| 254 |
+
if output['path'] in outputs and outputs[output['path']]!=output['sha256']:
|
| 255 |
+
raise RuntimeError('Inconsistent source output hashes')
|
| 256 |
+
outputs[output['path']]=output['sha256']
|
| 257 |
+
if len(receipts)!=27 or len(outputs)!=54:
|
| 258 |
+
raise RuntimeError('Unexpected operation/artifact count')
|
| 259 |
+
remote_stats=json.loads(ssh_python(REMOTE_STAT,data=list(outputs)))
|
| 260 |
+
for raw,expected in outputs.items():
|
| 261 |
+
if digest(Path(raw))!=expected:
|
| 262 |
+
raise RuntimeError('Canonical source changed after probe: '+raw)
|
| 263 |
+
copy_if_missing(Path(raw),Path(raw),expected,remote_stats[raw])
|
| 264 |
+
# Re-read every output after all transfers; normalized receipts are installed only afterward.
|
| 265 |
+
remote_stats=json.loads(ssh_python(REMOTE_STAT,data=list(outputs)))
|
| 266 |
+
for name,record,raw,raw_sha in receipts:
|
| 267 |
+
remote_raw=json.loads(ssh_python(REMOTE_STAT,data=[str(raw)]))[str(raw)]
|
| 268 |
+
copy_if_missing(raw,raw,raw_sha,remote_raw)
|
| 269 |
+
normalized=normalize_receipt(record,remote_stats,raw,raw_sha)
|
| 270 |
+
staged=DEST/'normalized_receipts'/f'{name}.json'
|
| 271 |
+
once(staged,encoded(normalized))
|
| 272 |
+
target=S/'receipts'/f'{name}.json'
|
| 273 |
+
existing=json.loads(ssh_python(REMOTE_STAT,data=[str(target)]))[str(target)]
|
| 274 |
+
copy_if_missing(staged,target,digest(staged),existing)
|
| 275 |
+
# CUDA is explicitly hidden. Probe overrides execute, preflight and wrapper: no launch path exists.
|
| 276 |
+
remote_probe_code="import os;os.environ['CUDA_VISIBLE_DEVICES']='';os.environ['PYTHONDONTWRITEBYTECODE']='1';os.environ['OPENBLAS_NUM_THREADS']='1';os.environ['OMP_NUM_THREADS']='1';\n"+PROBE
|
| 277 |
+
checked_remote=json.loads(ssh_python(remote_probe_code,[str(S),json.dumps(UNITS)]))
|
| 278 |
+
once(DEST/'REMOTE_PROBE.json',encoded(checked_remote))
|
| 279 |
+
evidence={'schema':'pbisc.strict9.diffusion-mirror.v1','state':'verified','units':UNITS,
|
| 280 |
+
'source_host':'server_1','destination_host':'server_2','completed_receipts':27,
|
| 281 |
+
'artifacts':54,'remote_verified_skips':len(checked_remote['operations']),
|
| 282 |
+
'gpu_launched':False,'source_probe_sha256':digest(DEST/'SOURCE_PROBE.json'),
|
| 283 |
+
'remote_probe_sha256':digest(DEST/'REMOTE_PROBE.json'),
|
| 284 |
+
'source_receipts':[{ 'operation':n,'path':str(p),'sha256':h} for n,_,p,h in receipts],
|
| 285 |
+
'outputs':remote_stats}
|
| 286 |
+
once(R/'MIRROR_VERIFIED.json',encoded(evidence))
|
| 287 |
+
print(json.dumps({'state':'verified','operations':27,'artifacts':54,'receipt':str(R/'MIRROR_VERIFIED.json')}))
|
| 288 |
+
|
| 289 |
+
|
| 290 |
+
class Tests(unittest.TestCase):
|
| 291 |
+
def test_exact_scope(self):
|
| 292 |
+
self.assertEqual(len(UNITS),9)
|
| 293 |
+
self.assertEqual(len(set(UNITS)),9)
|
| 294 |
+
with self.assertRaises(ValueError):relative('unexpected')
|
| 295 |
+
|
| 296 |
+
def test_once_reuses_exact_and_preserves_conflict(self):
|
| 297 |
+
with tempfile.TemporaryDirectory() as folder:
|
| 298 |
+
p=Path(folder)/'record.json';once(p,b'one');once(p,b'one')
|
| 299 |
+
with self.assertRaises(RuntimeError):once(p,b'two')
|
| 300 |
+
self.assertEqual(p.read_bytes(),b'one')
|
| 301 |
+
|
| 302 |
+
def test_normalize_only_stats_and_provenance(self):
|
| 303 |
+
row={'state':'completed','signature':'unchanged','execution':{'host':'source'},
|
| 304 |
+
'outputs':[{'path':'/same','bytes':3,'mtime_ns':1,'sha256':'a'*64}]}
|
| 305 |
+
result=normalize_receipt(row,{'/same':{'path':'/same','bytes':3,'mtime_ns':9,'sha256':'a'*64}},Path('/raw'),'b'*64)
|
| 306 |
+
self.assertEqual(row['outputs'][0]['mtime_ns'],1)
|
| 307 |
+
self.assertEqual(result['outputs'][0]['mtime_ns'],9)
|
| 308 |
+
self.assertEqual(result['signature'],row['signature'])
|
| 309 |
+
self.assertEqual(result['execution'],row['execution'])
|
| 310 |
+
result.pop('mirror_provenance');result['outputs'][0]['mtime_ns']=1
|
| 311 |
+
self.assertEqual(result,row)
|
| 312 |
+
|
| 313 |
+
def test_bad_hash_blocks_receipt(self):
|
| 314 |
+
row={'outputs':[{'path':'/same','bytes':3,'sha256':'a'*64}]}
|
| 315 |
+
with self.assertRaises(RuntimeError):
|
| 316 |
+
normalize_receipt(row,{'/same':{'path':'/same','bytes':3,'mtime_ns':9,'sha256':'b'*64}},Path('/raw'),'c'*64)
|
| 317 |
+
|
| 318 |
+
def test_noncompleted_and_out_of_scope_blocked(self):
|
| 319 |
+
with self.assertRaises(RuntimeError):validate_completed({'state':'running'},[])
|
| 320 |
+
with self.assertRaises(RuntimeError):
|
| 321 |
+
validate_completed({'state':'completed','signature':'s','outputs':[{'path':'/other','sha256':'a'*64}]},[Path('/expected')])
|
| 322 |
+
|
| 323 |
+
|
| 324 |
+
if __name__=='__main__':
|
| 325 |
+
parser=argparse.ArgumentParser(description=__doc__)
|
| 326 |
+
parser.add_argument('--self-test',action='store_true')
|
| 327 |
+
args=parser.parse_args()
|
| 328 |
+
if args.self_test:
|
| 329 |
+
result=unittest.TextTestRunner(verbosity=2).run(unittest.defaultTestLoader.loadTestsFromTestCase(Tests))
|
| 330 |
+
raise SystemExit(0 if result.wasSuccessful() else 1)
|
| 331 |
+
main()
|
paper-releases/pbisc-diffusion/updates/20261015T121654Z-x1-nine-core40-deck/diffusion/dataset/server_1/model8/plans/paper_figures_strictpairs_20261012/recoveries/x1_priority_completion_20261015/resume_x4.py
ADDED
|
@@ -0,0 +1,9 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
from pathlib import Path
|
| 2 |
+
import os,signal,json,datetime
|
| 3 |
+
R=Path(__file__).resolve().parent
|
| 4 |
+
p=R/'X4_PAUSE.json'
|
| 5 |
+
if p.exists():
|
| 6 |
+
j=json.loads(p.read_text());proc=Path('/proc')/str(j['pid'])
|
| 7 |
+
if proc.exists() and proc.joinpath('stat').read_text().split()[21]==j['start_ticks'] and b'/f01_trunk4x_complete_20261013/tools/downstream.py' in proc.joinpath('cmdline').read_bytes():
|
| 8 |
+
os.kill(j['pid'],signal.SIGCONT)
|
| 9 |
+
(R/'X4_RESUMED.json').write_text(json.dumps({'pid':j['pid'],'at':datetime.datetime.now(datetime.timezone.utc).isoformat(),'reason':'x1 GPU stage ended or controller stopped; existing x4 coordinator preserved'},indent=2)+'\n')
|
paper-releases/pbisc-diffusion/updates/20261015T121654Z-x1-nine-core40-deck/diffusion/dataset/server_1/model8/plans/paper_figures_strictpairs_20261012/runs/immicro/healthy/fold1/n40/lora/RUN.json
ADDED
|
@@ -0,0 +1,450 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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