Archive 4 checkpoints (1-4)
Browse files- paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/results/ji2025_chili/fewshot_draw0_cibersortx/per_donor.csv +26 -0
- paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/results/ji2025_chili/fewshot_draw0_cibersortx/summary.json +157 -0
- paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/results/ji2025_chili/fewshot_draw0_full/contrast.csv +17 -0
- paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/results/ji2025_chili/fewshot_draw0_full/per_donor.csv +26 -0
paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/results/ji2025_chili/fewshot_draw0_cibersortx/per_donor.csv
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| 1 |
+
donor,group,bp_comp_l1_final_cells,bp_comp_l1_first_cells,bp_comp_l1_final_mrna,bp_comp_l1_first_mrna,lora_comp_l1,bp_first_T cell,bp_final_T cell,obs_T cell,bp_first_B cell,bp_final_B cell,obs_B cell,bp_first_Monocyte,bp_final_Monocyte,obs_Monocyte,bp_first_NK cell,bp_final_NK cell,obs_NK cell,bp_first_DC,bp_final_DC,obs_DC,bp_first_Other,bp_final_Other,obs_Other
|
| 2 |
+
N064_TOL,TOL,0.26155520223296536,0.26155520223296536,0.37090081493561167,0.37090081493561167,0.3416567921003468,0.5209437759851987,0.5209437759851987,0.6517213771016813,0.07155809124327413,0.07155809124327413,0.044035228182546036,0.18704276671569595,0.18704276671569595,0.1677341873498799,0.10154396945143251,0.10154396945143251,0.07606084867894315,0.0543238417685187,0.0543238417685187,0.010008006405124099,0.0645875548358801,0.0645875548358801,0.05044035228182546
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| 3 |
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N064_FU1,FU1,0.6050529069688175,0.6050529069688175,0.7232915227695885,0.7232915227695885,0.3385885383129427,0.3418178264039793,0.3418178264039793,0.6396222365314446,0.10008845101109101,0.10008845101109101,0.016527151749302426,0.18715561287025556,0.18715561287025556,0.13865636402661516,0.19373672168335518,0.19373672168335518,0.19167203262502683,0.0,0.0,0.00472204335694355,0.17720138803131888,0.17720138803131888,0.008800171710667526
|
| 4 |
+
N038_BC,BC,0.893730337585936,0.893730337585936,0.9419535186038561,0.9419535186038561,0.4884198500535523,0.24123372895997525,0.24123372895997525,0.5608711174580507,0.10880942954168518,0.10880942954168518,0.0046411995715815784,0.1399574364513441,0.1399574364513441,0.16565512317029632,0.11804790477000342,0.11804790477000342,0.2170653338093538,0.03176080922278168,0.03176080922278168,0.034273473759371655,0.3601906910542103,0.3601906910542103,0.017493752231345947
|
| 5 |
+
N038_AC,AC,1.1170884481521384,1.1170884481521384,1.1758318827459948,1.1758318827459948,0.7220804828973844,0.1533503286005203,0.1533503286005203,0.6830985915492958,0.11602475211264217,0.11602475211264217,0.00829979879275654,0.1654127010592248,0.1654127010592248,0.1290241448692153,0.13393247523723473,0.13393247523723473,0.12072434607645875,0.003145688772102675,0.003145688772102675,0.03194164989939638,0.4281340542182754,0.4281340542182754,0.026911468812877263
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| 6 |
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N055_AC,AC,1.0251622474793898,1.0251622474793898,1.0030748720019087,1.0030748720019087,0.3184401114206128,0.028559730939086595,0.028559730939086595,0.340297121634169,0.1933603503886232,0.1933603503886232,0.07799442896935933,0.2366426289813283,0.2366426289813283,0.32474466109563604,0.09849321086171006,0.09849321086171006,0.2051996285979573,0.0,0.0,0.0060352831940575676,0.44294407882925185,0.44294407882925185,0.0457288765088208
|
| 7 |
+
N136_TOL,TOL,1.0275283997418607,1.0275283997418607,1.0600845887051114,1.0600845887051114,0.3552832674571805,0.0,0.0,0.48616600790513836,0.1304351927678281,0.1304351927678281,0.10013175230566534,0.24686636452688224,0.24686636452688224,0.19104084321475626,0.06594594505660577,0.06594594505660577,0.0922266139657444,0.0,0.0,0.0013175230566534915,0.5567524976486838,0.5567524976486838,0.12911725955204217
|
| 8 |
+
N136_FU1,FU1,0.7878943536766535,0.7878943536766535,0.847669540124037,0.847669540124037,0.3804728390843866,0.12847768657947495,0.12847768657947495,0.4246668944311582,0.11756507249760152,0.11756507249760152,0.14724974376494704,0.32656824381223454,0.32656824381223454,0.19337205329689103,0.02963766914096848,0.02963766914096848,0.09531943969935087,0.0,0.0,0.0023915271609156134,0.39775132796972046,0.39775132796972046,0.13700034164673727
|
| 9 |
+
N128_BC,BC,0.8796820087760088,0.8796820087760088,0.8983840180544964,0.8983840180544964,0.2148272680676575,0.18885180288800954,0.18885180288800954,0.5158892875448488,0.14769585334282337,0.14769585334282337,0.06817016914402871,0.24150950091816403,0.24150950091816403,0.29420809841107126,0.018316400160512007,0.018316400160512007,0.07842132239876987,0.07149224929638857,0.07149224929638857,0.03331624807790876,0.3321341933941025,0.3321341933941025,0.00999487442337263
|
| 10 |
+
N128_AC,AC,0.8107212765190402,0.8107212765190402,0.8738058011476704,0.8738058011476704,0.2926531514928123,0.22705994668723822,0.22705994668723822,0.5488389237007003,0.11455146041256616,0.11455146041256616,0.06524143015112421,0.20631632210012,0.20631632210012,0.2790269074824917,0.05989928904600776,0.05989928904600776,0.07077036490969407,0.10713317074847727,0.10713317074847727,0.029487652045705862,0.28503981100559067,0.28503981100559067,0.006634721710283818
|
| 11 |
+
N129_BC,BC,0.9907136633719733,0.9907136633719733,1.0843396280043358,1.0843396280043358,0.5696650469711694,0.23515561690960135,0.23515561690960135,0.5963718820861678,0.1317059335218795,0.1317059335218795,0.11305474570780694,0.19350342607700594,0.19350342607700594,0.08357628765792031,0.047265329182189716,0.047265329182189716,0.18140589569160998,0.05981118941416028,0.05981118941416028,0.013281503077421444,0.3325585048951632,0.3325585048951632,0.012309685779073534
|
| 12 |
+
N129_AC,AC,1.0623113240694482,1.0623113240694482,1.165427732663748,1.165427732663748,0.676629973790803,0.22322564873733602,0.22322564873733602,0.7076483202287348,0.09266362828820324,0.09266362828820324,0.04932094353109364,0.1595025639155502,0.1595025639155502,0.07969978556111508,0.08693391438876903,0.08693391438876903,0.13366690493209435,0.06151251606202317,0.06151251606202317,0.0228734810578985,0.3761617286081182,0.3761617286081182,0.006790564689063617
|
| 13 |
+
N147_TOL,TOL,1.0438020294846577,1.0438020294846577,1.0070752102317087,1.0070752102317087,0.4285482866043613,0.07959169780179838,0.07959169780179838,0.44205607476635517,0.07265894968496646,0.07265894968496646,0.00809968847352025,0.2860418060186171,0.2860418060186171,0.4193146417445483,0.05140629140610299,0.05140629140610299,0.07102803738317758,0.0,0.0,0.0065420560747663555,0.510301255088515,0.510301255088515,0.0529595015576324
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| 14 |
+
N158_AC,AC,1.466646191735697,1.466646191735697,1.4602172557236464,1.4602172557236464,0.6579482528674313,0.04021800071086525,0.04021800071086525,0.24619898639637236,0.08289562356423719,0.08289562356423719,0.026673779674579887,0.11935275810169851,0.11935275810169851,0.6295012003200854,0.03215282443401831,0.03215282443401831,0.04934649239797279,0.04364373398193554,0.04364373398193554,0.024806615097359295,0.6817370592072451,0.6817370592072451,0.0234729261136303
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| 15 |
+
N159_BC,BC,1.0111113614532323,1.0111113614532323,1.0879237729584434,1.0879237729584434,0.2616586398518126,0.3617200543023295,0.3617200543023295,0.6996559936491136,0.09348689240566363,0.09348689240566363,0.018523418893887273,0.10970255989672623,0.10970255989672623,0.08123842286319131,0.0199960299882547,0.0199960299882547,0.173590897062715,0.0,0.0,0.014024874305371792,0.41509446340702605,0.41509446340702605,0.01296639322572109
|
| 16 |
+
N001_TOL,TOL,1.3088189478818495,1.3088189478818495,1.3655421003164623,1.3655421003164623,0.38067868504772,0.16903191084896033,0.16903191084896033,0.51926475786497,0.1027541750907022,0.1027541750907022,0.03375751148815836,0.060925768414231814,0.060925768414231814,0.21067515022976316,0.06190361385137973,0.06190361385137973,0.2163308589607635,0.07296581485228082,0.07296581485228082,0.003711558854718982,0.5324187169424451,0.5324187169424451,0.016260162601626018
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| 17 |
+
N001_FU1,FU1,1.3418478857323253,1.3418478857323253,1.346620776636923,1.346620776636923,0.2511346675463675,0.04840551699628977,0.04840551699628977,0.29601935341983726,0.10719419209142207,0.10719419209142207,0.06575764240158347,0.12603689422437167,0.12603689422437167,0.48823400043985044,0.07480078908449764,0.07480078908449764,0.13591378931163403,0.02116165042343043,0.02116165042343043,0.0010996261271167802,0.6224009571799884,0.6224009571799884,0.012975588299978007
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| 18 |
+
N002_TOL,TOL,0.9188459162897565,0.9188459162897565,0.9902192759973023,0.9902192759973023,0.2841380183602406,0.2800811709849396,0.2800811709849396,0.41579613801836024,0.1540627079097819,0.1540627079097819,0.05777144666033555,0.12024713478501263,0.12024713478501263,0.3779677113010446,0.05192964776608119,0.05192964776608119,0.1179170623615068,0.08652864316529248,0.08652864316529248,0.020101297879075657,0.3071506953888923,0.3071506953888923,0.010446343779677113
|
| 19 |
+
N002_FU1,FU1,1.2833259960115886,1.2833259960115886,1.340947795072379,1.340947795072379,0.7158525963149078,0.1262001714904653,0.1262001714904653,0.31618090452261305,0.09509741255940807,0.09509741255940807,0.07276381909547738,0.06510559416011019,0.06510559416011019,0.45587939698492463,0.061704603177801035,0.061704603177801035,0.12261306532663317,0.116636419296874,0.116636419296874,0.02271356783919598,0.5352557993153414,0.5352557993153414,0.00984924623115578
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| 20 |
+
N005_BC,BC,1.3910141090960146,1.3910141090960146,1.4391176337345213,1.4391176337345213,0.4508302143942969,0.042237126883795176,0.042237126883795176,0.7200817738638151,0.09619012479110574,0.09619012479110574,0.05016512030193427,0.13908276600559993,0.13908276600559993,0.11448340934109137,0.08125251616215881,0.08125251616215881,0.09891492373014625,0.010723081516679113,0.010723081516679113,0.007705614090265765,0.6305143846406612,0.6305143846406612,0.008649158672747287
|
| 21 |
+
N005_AC,AC,0.9219821429058441,0.9219821429058441,0.9331292802135775,0.9331292802135775,0.2285351975919992,0.36692762711388766,0.36692762711388766,0.8100786484124672,0.049691244422018326,0.049691244422018326,0.015147101660355374,0.061682233562523205,0.061682233562523205,0.07952228371686572,0.2592317882858806,0.2592317882858806,0.08243518788231867,0.0440556882618965,0.0440556882618965,0.010195164579085349,0.21841141835379374,0.21841141835379374,0.0026216137489076608
|
| 22 |
+
N022_TOL,TOL,1.1699081762453223,1.1699081762453223,1.2706449088694631,1.2706449088694631,1.0627006299643933,0.19016863876585485,0.19016863876585485,0.4864420706655711,0.09772208127226052,0.09772208127226052,0.03697617091207888,0.24952757802615388,0.24952757802615388,0.045740892906053134,0.12956092142701403,0.12956092142701403,0.4182415776499589,0.0,0.0,0.0,0.33302078050871664,0.33302078050871664,0.01259928786633799
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| 23 |
+
N022_FU1,FU1,0.6890244806167829,0.6890244806167829,0.7525846915938008,0.7525846915938008,0.3065627283800243,0.262693105611404,0.262693105611404,0.48477466504263095,0.07608848018494488,0.07608848018494488,0.048721071863580996,0.09359019804918049,0.09359019804918049,0.20259845716605765,0.23992715193033387,0.23992715193033387,0.25334957369062117,0.006577422477504879,0.006577422477504879,0.0,0.32112364174663194,0.32112364174663194,0.010556232237109216
|
| 24 |
+
N035_TOL,TOL,1.479728564840439,1.479728564840439,1.4938000332893617,1.4938000332893617,0.5679599499374218,0.0,0.0,0.2853566958698373,0.08946909763831425,0.08946909763831425,0.016896120150187734,0.0862048647167486,0.0862048647167486,0.31101376720901125,0.11226545085313197,0.11226545085313197,0.3404255319148936,0.012228606014906227,0.012228606014906227,0.01376720901126408,0.6998319807768989,0.6998319807768989,0.03254067584480601
|
| 25 |
+
N043_TOL,TOL,1.429584743736892,1.429584743736892,1.483249178567859,1.483249178567859,0.8114432658309225,0.0,0.0,0.3548698167791707,0.10689193477282512,0.10689193477282512,0.05737704918032787,0.0880189133625033,0.0880189133625033,0.04580520732883317,0.12127320190204582,0.12127320190204582,0.4811957569913211,0.014321197289600919,0.014321197289600919,0.0028929604628736743,0.6694947526730249,0.6694947526730249,0.05785920925747348
|
| 26 |
+
N043_FU1,FU1,0.7128422896818537,0.7128422896818537,0.6893581744834323,0.6893581744834323,0.6290342352827079,0.07732903145956742,0.07732903145956742,0.1638056444573756,0.11991183912131952,0.11991183912131952,0.06779167878964212,0.3362545595274355,0.3362545595274355,0.5728833284841431,0.11914277653750516,0.11914277653750516,0.14896712249054408,0.0,0.0,0.0034914169333721268,0.34736179335417233,0.34736179335417233,0.043060808844922895
|
paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/results/ji2025_chili/fewshot_draw0_cibersortx/summary.json
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|
|
|
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|
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|
|
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|
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|
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|
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|
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|
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|
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|
|
|
|
|
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|
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|
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|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"dataset": "ji2025_chili",
|
| 3 |
+
"comparison": "fewshot",
|
| 4 |
+
"draw": 0,
|
| 5 |
+
"gene_mode": "cibersortx",
|
| 6 |
+
"stored_scores": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ji2025_chili/fewshot_n5/draw0",
|
| 7 |
+
"lora_arm": "lora5",
|
| 8 |
+
"n_donors": 25,
|
| 9 |
+
"contrast": true,
|
| 10 |
+
"genes_scoring": 5752,
|
| 11 |
+
"genes_covered_by_Z_all_donors": 2278,
|
| 12 |
+
"bayesprism": {
|
| 13 |
+
"comp_l1": 1.0251969201714595,
|
| 14 |
+
"comp_l1_by_variant": {
|
| 15 |
+
"final_cells": 1.0251969201714595,
|
| 16 |
+
"first_cells": 1.0251969201714595,
|
| 17 |
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"final_mrna": 1.0722077602978095,
|
| 18 |
+
"first_mrna": 1.0722077602978095
|
| 19 |
+
},
|
| 20 |
+
"mean_fraction": {
|
| 21 |
+
"final_cells": {
|
| 22 |
+
"T cell": 0.1733,
|
| 23 |
+
"B cell": 0.1067,
|
| 24 |
+
"Monocyte": 0.1693,
|
| 25 |
+
"NK cell": 0.0948,
|
| 26 |
+
"DC": 0.0327,
|
| 27 |
+
"Other": 0.4231
|
| 28 |
+
},
|
| 29 |
+
"first_cells": {
|
| 30 |
+
"T cell": 0.1733,
|
| 31 |
+
"B cell": 0.1067,
|
| 32 |
+
"Monocyte": 0.1693,
|
| 33 |
+
"NK cell": 0.0948,
|
| 34 |
+
"DC": 0.0327,
|
| 35 |
+
"Other": 0.4231
|
| 36 |
+
},
|
| 37 |
+
"final_mrna": {
|
| 38 |
+
"T cell": 0.1532,
|
| 39 |
+
"B cell": 0.1069,
|
| 40 |
+
"Monocyte": 0.1978,
|
| 41 |
+
"NK cell": 0.0744,
|
| 42 |
+
"DC": 0.0512,
|
| 43 |
+
"Other": 0.4165
|
| 44 |
+
},
|
| 45 |
+
"first_mrna": {
|
| 46 |
+
"T cell": 0.1532,
|
| 47 |
+
"B cell": 0.1069,
|
| 48 |
+
"Monocyte": 0.1978,
|
| 49 |
+
"NK cell": 0.0744,
|
| 50 |
+
"DC": 0.0512,
|
| 51 |
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"Other": 0.4165
|
| 52 |
+
}
|
| 53 |
+
},
|
| 54 |
+
"logfc_r_mean_cp10k": 0.18216746572132886,
|
| 55 |
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"partial_r_mean_cp10k": 0.008337046485416296,
|
| 56 |
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"logfc_r_mean_cp10k_covered_genes": 0.27486610240217746,
|
| 57 |
+
"deg_top50_sum": 0,
|
| 58 |
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"deg_top50_sum_covered_genes": 0,
|
| 59 |
+
"per_type_logfc_r": {
|
| 60 |
+
"T cell": NaN,
|
| 61 |
+
"B cell": NaN,
|
| 62 |
+
"Monocyte": 0.1822,
|
| 63 |
+
"NK cell": NaN
|
| 64 |
+
}
|
| 65 |
+
},
|
| 66 |
+
"observed_mean_fraction": {
|
| 67 |
+
"T cell": 0.4958,
|
| 68 |
+
"B cell": 0.0508,
|
| 69 |
+
"Monocyte": 0.2433,
|
| 70 |
+
"NK cell": 0.1669,
|
| 71 |
+
"DC": 0.0128,
|
| 72 |
+
"Other": 0.0303
|
| 73 |
+
},
|
| 74 |
+
"lora": {
|
| 75 |
+
"comp_l1": 0.46942970758493824,
|
| 76 |
+
"coverage": 0.6992,
|
| 77 |
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"logfc_r_mean_cp10k": 0.38697985726899736,
|
| 78 |
+
"deg_top50_sum": 0,
|
| 79 |
+
"partial_r_mean_cp10k": 0.36588903106531123
|
| 80 |
+
},
|
| 81 |
+
"broadcast": {
|
| 82 |
+
"logfc_r_mean_cp10k": 0.21311861411338662,
|
| 83 |
+
"logfc_r_mean_cp10k_covered_genes": 0.3978393598014329,
|
| 84 |
+
"deg_top50_sum": 0
|
| 85 |
+
},
|
| 86 |
+
"other_arms": {
|
| 87 |
+
"zs_raw": {
|
| 88 |
+
"comp_l1": 0.7400644990694674,
|
| 89 |
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"logfc_r_mean_cp10k": 0.10251919469370015,
|
| 90 |
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"deg_top50_sum": 0
|
| 91 |
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},
|
| 92 |
+
"zs_pseudo": {
|
| 93 |
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"comp_l1": 0.16717128996574535,
|
| 94 |
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"logfc_r_mean_cp10k": 0.1840352599240339,
|
| 95 |
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"deg_top50_sum": 0
|
| 96 |
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},
|
| 97 |
+
"zs_cal": {
|
| 98 |
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"comp_l1": 0.5151446979886816,
|
| 99 |
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"logfc_r_mean_cp10k": 0.11356580338558689,
|
| 100 |
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"deg_top50_sum": 0
|
| 101 |
+
}
|
| 102 |
+
},
|
| 103 |
+
"gates": {
|
| 104 |
+
"observed_composition_equal": true,
|
| 105 |
+
"broadcast_r_equal": true,
|
| 106 |
+
"broadcast_deg_equal": true
|
| 107 |
+
},
|
| 108 |
+
"method": "cibersortx",
|
| 109 |
+
"has_cell_type_expression": true,
|
| 110 |
+
"n_case": 14,
|
| 111 |
+
"n_control": 11,
|
| 112 |
+
"deg_per_type": {
|
| 113 |
+
"zero_filled": {
|
| 114 |
+
"bp": {
|
| 115 |
+
"T cell": 0,
|
| 116 |
+
"B cell": 0,
|
| 117 |
+
"Monocyte": 0,
|
| 118 |
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"NK cell": 0,
|
| 119 |
+
"DC": 0
|
| 120 |
+
},
|
| 121 |
+
"broadcast": {
|
| 122 |
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"T cell": 0,
|
| 123 |
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"B cell": 0,
|
| 124 |
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"Monocyte": 0,
|
| 125 |
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"NK cell": 0,
|
| 126 |
+
"DC": 0
|
| 127 |
+
}
|
| 128 |
+
},
|
| 129 |
+
"covered": {
|
| 130 |
+
"bp": {
|
| 131 |
+
"T cell": null,
|
| 132 |
+
"B cell": null,
|
| 133 |
+
"Monocyte": 0,
|
| 134 |
+
"NK cell": null,
|
| 135 |
+
"DC": 0
|
| 136 |
+
},
|
| 137 |
+
"broadcast": {
|
| 138 |
+
"T cell": null,
|
| 139 |
+
"B cell": null,
|
| 140 |
+
"Monocyte": 0,
|
| 141 |
+
"NK cell": null,
|
| 142 |
+
"DC": 0
|
| 143 |
+
}
|
| 144 |
+
}
|
| 145 |
+
},
|
| 146 |
+
"hires_imputed_genes": {
|
| 147 |
+
"fewshot0|T cell": 0,
|
| 148 |
+
"fewshot0|B cell": 0,
|
| 149 |
+
"fewshot0|Monocyte": 1818,
|
| 150 |
+
"fewshot0|NK cell": 0,
|
| 151 |
+
"fewshot0|DC": 1150,
|
| 152 |
+
"fewshot0|Other": 0
|
| 153 |
+
},
|
| 154 |
+
"tool_sha256": "b541f68dc286497e8347d487af58ff3550a383d126eeabe347c0726e4fb28799",
|
| 155 |
+
"score_ft_sha256": "ec5f40b4cea6d5062d0138f3b934abb6465e34cbfeac869c8a0906924c033aec",
|
| 156 |
+
"seconds": 1.3
|
| 157 |
+
}
|
paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/results/ji2025_chili/fewshot_draw0_full/contrast.csv
ADDED
|
@@ -0,0 +1,17 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
genes,celltype,statistic,n_genes,r_generated,r_broadcast,partial_r_generated_given_broadcast,r_generated_vs_broadcast
|
| 2 |
+
zero_filled,T cell,mean_cp10k,3038,0.1547451616502733,0.21197028589936057,0.02645343129177719,0.6359062122391346
|
| 3 |
+
zero_filled,T cell,pseudobulk_log1p_cpm,3038,0.32653811032326996,0.3111080127833571,0.16860024106558325,0.6648934218706715
|
| 4 |
+
zero_filled,B cell,mean_cp10k,3233,0.07370165730549971,0.10073938447302222,-0.0041849688978377675,0.7585396998486753
|
| 5 |
+
zero_filled,B cell,pseudobulk_log1p_cpm,3233,0.018503896074305682,0.012072638770403557,0.018115050601602914,0.9097217700233557
|
| 6 |
+
zero_filled,Monocyte,mean_cp10k,3193,0.3978577950471375,0.3732268158395985,0.15958784398573686,0.8713603017384908
|
| 7 |
+
zero_filled,Monocyte,pseudobulk_log1p_cpm,3193,0.32528472738751385,0.3506580485024196,-0.032119828098788376,0.953496143298996
|
| 8 |
+
zero_filled,NK cell,mean_cp10k,3059,0.1183468724546971,0.1665379702415652,-0.02189121629602838,0.7900828257855315
|
| 9 |
+
zero_filled,NK cell,pseudobulk_log1p_cpm,3059,0.10232076624122237,0.15048321474174686,-0.09419599460079423,0.9210083503614153
|
| 10 |
+
covered,T cell,mean_cp10k,2850,0.18827251375028287,0.2026106962829452,0.060528364038855864,0.7289724577315
|
| 11 |
+
covered,T cell,pseudobulk_log1p_cpm,2850,0.3626635392763163,0.30770908362866994,0.21818029455220092,0.6907808340668499
|
| 12 |
+
covered,B cell,mean_cp10k,3047,0.0804337001903068,0.07682557584731979,0.027906809761983085,0.8656290364171891
|
| 13 |
+
covered,B cell,pseudobulk_log1p_cpm,3047,0.01768992101232229,0.00038956840969306324,0.059519521129229855,0.9567382460868479
|
| 14 |
+
covered,Monocyte,mean_cp10k,3014,0.417749852780056,0.39135447693352343,0.15931475037972617,0.9459129486126447
|
| 15 |
+
covered,Monocyte,pseudobulk_log1p_cpm,3014,0.33755886446369315,0.3395120070248064,0.015514557768182438,0.9874622023699696
|
| 16 |
+
covered,NK cell,mean_cp10k,2879,0.1499809599136388,0.14955500335144928,0.037669902939497076,0.8886279973877701
|
| 17 |
+
covered,NK cell,pseudobulk_log1p_cpm,2879,0.11248027291221192,0.1278241657123771,-0.046239345352384144,0.9688336916217964
|
paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/results/ji2025_chili/fewshot_draw0_full/per_donor.csv
ADDED
|
@@ -0,0 +1,26 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
donor,group,bp_comp_l1_final_cells,bp_comp_l1_first_cells,bp_comp_l1_final_mrna,bp_comp_l1_first_mrna,lora_comp_l1,bp_first_T cell,bp_final_T cell,obs_T cell,bp_first_B cell,bp_final_B cell,obs_B cell,bp_first_Monocyte,bp_final_Monocyte,obs_Monocyte,bp_first_NK cell,bp_final_NK cell,obs_NK cell,bp_first_DC,bp_final_DC,obs_DC,bp_first_Other,bp_final_Other,obs_Other
|
| 2 |
+
N064_TOL,TOL,0.9358000489705626,1.075573369961027,1.040247470824909,1.1404456620553625,0.3416567921003468,0.1226968998154459,0.1938243708595957,0.6517213771016813,0.12228190328985988,0.09073516201236427,0.044035228182546036,0.40483246400003026,0.4388665567786289,0.1677341873498799,0.20464020449833362,0.17871753482831693,0.07606084867894315,0.0012457987108459717,4.988161928489668e-06,0.010008006405124099,0.1443027296854844,0.0978513873591659,0.05044035228182546
|
| 3 |
+
N064_FU1,FU1,0.9633957849344825,1.112684029210057,1.04900256857876,1.1630933559880317,0.3385885383129427,0.08710606303168786,0.16264379718872843,0.6396222365314446,0.07147590476246277,0.053982709529433924,0.016527151749302426,0.36565525753107536,0.4030306680802864,0.13865636402661516,0.2265355779254446,0.22895056459235888,0.19167203262502683,0.0008962022516718197,2.590232418264567e-06,0.00472204335694355,0.24833099449765766,0.1513896703767739,0.008800171710667526
|
| 4 |
+
N038_BC,BC,1.1194100674066696,1.259651068133121,1.2202593397334436,1.3225158594644584,0.4884198500535523,0.0024793807363387,0.05464393790516138,0.5608711174580507,0.08125424089614552,0.0698507414534842,0.0046411995715815784,0.3514352273151529,0.3896004403516349,0.16565512317029632,0.1778326465466007,0.19785676198399038,0.2170653338093538,0.0020723636772762336,4.191434289645751e-06,0.034273473759371655,0.3849261408284859,0.2880439268714396,0.017493752231345947
|
| 5 |
+
N038_AC,AC,1.4011110044116855,1.4249416067800182,1.409464721727956,1.4318213123571621,0.7220804828973844,0.00020944173343154747,0.014480548799998553,0.6830985915492958,0.04761921689685479,0.044214249412054214,0.00829979879275654,0.371679292253115,0.4102680314207744,0.1290241448692153,0.14287993660610776,0.18942747059599488,0.12072434607645875,0.002359996325251476,4.190442850895688e-06,0.03194164989939638,0.43525211618523935,0.34160550932832706,0.026911468812877263
|
| 6 |
+
N055_AC,AC,0.8218349899173877,0.8952492507768457,0.9130713099611577,0.964829966963318,0.3184401114206128,6.171503524351628e-05,1.8763358656352914e-05,0.340297121634169,0.039162763136723094,0.03206496101751932,0.07799442896935933,0.47620093159700355,0.5274081522326539,0.32474466109563604,0.14149417645919687,0.18652253348140047,0.2051996285979573,0.00118318237595681,2.7095792731442484e-06,0.0060352831940575676,0.34189723139587613,0.2539828803304968,0.0457288765088208
|
| 7 |
+
N136_TOL,TOL,0.8602705115308654,0.9525708164291733,0.9517656148142499,1.0199576251301732,0.3552832674571805,0.022419245399538403,0.07490662131956471,0.48616600790513836,0.08844997162292811,0.08257148738999898,0.10013175230566534,0.41849037483786417,0.4669051884646862,0.19104084321475626,0.09454746914153403,0.0990457828456355,0.0922266139657444,0.0004606580304040472,1.9187924607327067e-06,0.0013175230566534915,0.3756322809677312,0.27656900118765376,0.12911725955204217
|
| 8 |
+
N136_FU1,FU1,0.7616485449080967,0.8304695746763573,0.8743068262060895,0.9111636516901831,0.3804728390843866,0.030383173889978004,0.0713678244822229,0.4246668944311582,0.12803069630859146,0.12211509058191743,0.14724974376494704,0.4463149559768683,0.5092982334207811,0.19337205329689103,0.10039717463425366,0.09811486904766228,0.09531943969935087,0.0006595078202727246,9.77838832111922e-07,0.0023915271609156134,0.2942144913700358,0.19910300462858416,0.13700034164673727
|
| 9 |
+
N128_BC,BC,0.933119645658242,1.0799551518440682,0.9819420915206292,1.0794348281663064,0.2148272680676575,0.005723296125435732,0.08264416961848829,0.5158892875448488,0.10702242723830341,0.0983178766011433,0.06817016914402871,0.43747520228445047,0.47588843274104,0.29420809841107126,0.13433279795874156,0.1365828888201389,0.07842132239876987,0.003504663575287797,1.5431751483305556e-06,0.03331624807790876,0.31194161281778116,0.2065650890440413,0.00999487442337263
|
| 10 |
+
N128_AC,AC,0.9464740945716679,1.1062327436128632,1.0070164399374353,1.1139059090921672,0.2926531514928123,0.02110028240215521,0.10508751697552554,0.5488389237007003,0.1273173127467213,0.1071962342031969,0.06524143015112421,0.4272520684024938,0.46106421596052405,0.2790269074824917,0.15805865594091986,0.15392043167383082,0.07077036490969407,0.004109921537819415,2.0114850467438532e-06,0.029487652045705862,0.26216175896989047,0.17272958970187588,0.006634721710283818
|
| 11 |
+
N129_BC,BC,1.058930690853926,1.2175879334150908,1.2109954980174946,1.2899264031879465,0.5696650469711694,0.025641777854935315,0.14134629561562304,0.5963718820861678,0.129706703500835,0.09588774505916305,0.11305474570780694,0.43028371436474133,0.45812800790493774,0.08357628765792031,0.15393525684995657,0.13741242773337345,0.18140589569160998,0.002688279442761967,2.2127278835698592e-06,0.013281503077421444,0.2577442679867697,0.1672233109590191,0.012309685779073534
|
| 12 |
+
N129_AC,AC,1.2237271984520097,1.4140589783222222,1.2891366139699068,1.421569306141263,0.676629973790803,0.02019010580735225,0.11865653641621603,0.7076483202287348,0.11602927374181651,0.08672970216089984,0.04932094353109364,0.3870985505964007,0.41721245859911993,0.07969978556111508,0.1854939796316613,0.17904635199258762,0.13366690493209435,0.0033022063181699264,1.665644412605568e-06,0.0228734810578985,0.2878858839045992,0.19835328518676418,0.006790564689063617
|
| 13 |
+
N147_TOL,TOL,0.706246855409517,0.9370405136223278,0.7951643196767493,0.9566445960250566,0.4285482866043613,0.002505455536502119,0.11859567519169381,0.44205607476635517,0.03893321281466801,0.037280603263618206,0.00809968847352025,0.42678997471466146,0.46480428617290115,0.4193146417445483,0.04723455876941436,0.04790587685205955,0.07102803738317758,0.0013658971072187042,1.1884757871394867e-06,0.0065420560747663555,0.48317090105753535,0.3314123700439401,0.0529595015576324
|
| 14 |
+
N158_AC,AC,0.43346808023033334,0.7732134998722116,0.36187813611196773,0.645527859513118,0.6579482528674313,0.05655124303914525,0.2057305148311166,0.24619898639637236,0.11002159806918052,0.08948559480365909,0.026673779674579887,0.4527702017725536,0.4780384986420591,0.6295012003200854,0.09008141686941697,0.06017442310550108,0.04934649239797279,0.004578607066012421,3.748225474565987e-06,0.024806615097359295,0.28599693318369124,0.1665672203921894,0.0234729261136303
|
| 15 |
+
N159_BC,BC,0.7497573700306087,1.1011583640921188,0.9429636415979759,1.2344430419069297,0.2616586398518126,0.26779670788353394,0.49156350105949365,0.6996559936491136,0.04471973852517464,0.03046288305124951,0.018523418893887273,0.24968065532552958,0.26118607940288757,0.08123842286319131,0.06672966261400795,0.020828016663514328,0.173590897062715,0.002166212473599017,1.5622788880088573e-06,0.014024874305371792,0.36890702317815494,0.19595795754396692,0.01296639322572109
|
| 16 |
+
N001_TOL,TOL,0.9205287344330741,1.1486508434522693,1.03389886378206,1.2050770611101513,0.38067868504772,0.010462752369339969,0.12541161567164094,0.51926475786497,0.08996654512542392,0.07287331320062711,0.03375751148815836,0.3060272725411881,0.3374672513509889,0.21067515022976316,0.1536611459342255,0.15362782813318787,0.2163308589607635,0.0008578556507522983,3.3646590865624178e-06,0.003711558854718982,0.4390244283790702,0.3106166269844686,0.016260162601626018
|
| 17 |
+
N001_FU1,FU1,0.5284178224153593,0.6743909221210233,0.5724973057260097,0.6230015620413389,0.2511346675463675,0.0002036416466241786,0.05424394024329161,0.29601935341983726,0.0632134797289623,0.044420811723536756,0.06575764240158347,0.45030098991549733,0.49781653804728077,0.48823400043985044,0.16549749029177022,0.20262696328371882,0.13591378931163403,0.00019705003679253798,2.9587740294961877e-06,0.0010996261271167802,0.3205873483803535,0.20088878792814255,0.012975588299978007
|
| 18 |
+
N002_TOL,TOL,0.6125263940472789,0.8651749256508015,0.682395312585252,0.8363407820820472,0.2841380183602406,0.019025509758525273,0.1296310129579682,0.41579613801836024,0.1231950268285547,0.11013280398860362,0.05777144666033555,0.35973812240959196,0.3864746582683515,0.3779677113010446,0.14737975269447368,0.14565267278532285,0.1179170623615068,0.002514052204962526,3.2259158282856264e-06,0.020101297879075657,0.3481475361038919,0.2281056260839256,0.010446343779677113
|
| 19 |
+
N002_FU1,FU1,0.6341627574603228,0.7600601228216292,0.5614174786250749,0.6731689154212483,0.7158525963149078,0.03698384986476639,0.08061261377673005,0.31618090452261305,0.08746675932826165,0.0880494981506882,0.07276381909547738,0.3780808468451935,0.3970737258418653,0.45587939698492463,0.12031831601734141,0.15634529948273568,0.12261306532663317,0.001973860535250891,6.150997976890339e-06,0.02271356783919598,0.3751763674091861,0.2779127117500038,0.00984924623115578
|
| 20 |
+
N005_BC,BC,1.372903619568311,1.45192790955275,1.401327225936372,1.4502637870700132,0.4508302143942969,0.000257786975391354,0.04133271048029029,0.7200817738638151,0.06113963253821505,0.05480217301310925,0.05016512030193427,0.40418276732915254,0.4544990935189872,0.11448340934109137,0.14850559001429361,0.18806857904000834,0.09891492373014625,0.0015656462023145462,2.8676896349395154e-06,0.007705614090265765,0.38434857694063296,0.2612945762579699,0.008649158672747287
|
| 21 |
+
N005_AC,AC,1.146954285786886,1.4101700979929277,1.2519439166766435,1.4605845798825283,0.2285351975919992,0.1144125809860741,0.24679355758143093,0.8100786484124672,0.12797943275201598,0.08512417641803018,0.015147101660355374,0.24147228425912456,0.26781848918337087,0.07952228371686572,0.3273371338985953,0.29581926910766354,0.08243518788231867,0.0007761830090145639,3.1125166786359773e-06,0.010195164579085349,0.18802238509517546,0.10444139519282582,0.0026216137489076608
|
| 22 |
+
N022_TOL,TOL,1.2739195993127523,1.3322629868780878,1.4011520135364999,1.4272563355507677,1.0627006299643933,0.010082412618795056,0.05827128927847134,0.4864420706655711,0.048914519708702274,0.02425831674058531,0.03697617091207888,0.4395720600509018,0.47337424156218594,0.045740892906053134,0.22846974225769118,0.22217041355217598,0.4182415776499589,0.0002529127316987707,2.445168562002606e-06,0.0,0.272708352632211,0.22192329369801939,0.01259928786633799
|
| 23 |
+
N022_FU1,FU1,0.5970319497485839,0.6958645813667915,0.6863507671213483,0.7612957130317531,0.3065627283800243,0.13684237435923527,0.18625869016833901,0.48477466504263095,0.08894140605515116,0.05817175481061411,0.048721071863580996,0.30374462785380213,0.33721253825168096,0.20259845716605765,0.29882647954189984,0.29502215889697675,0.25334957369062117,0.0002830570639894915,1.7567073068168895e-06,0.0,0.17136205512592215,0.12333310116508228,0.010556232237109216
|
| 24 |
+
N035_TOL,TOL,0.8653725048053105,0.9952709595839702,0.9467365344827362,1.0452880999329706,0.5679599499374218,0.00012611943458727792,0.024637884985321497,0.2853566958698373,0.03856221542371069,0.032467187021927996,0.016896120150187734,0.3515467575958977,0.3902493031553497,0.31101376720901125,0.14044787318877203,0.18222102148794458,0.3404255319148936,0.0013399643806506383,4.277920073655451e-06,0.01376720901126408,0.4679770699763817,0.3704203254293826,0.03254067584480601
|
| 25 |
+
N043_TOL,TOL,1.2385435299609688,1.4031473360459843,1.3390426924421983,1.4688144313369311,0.8114432658309225,0.014183948499551931,0.026332495565905906,0.3548698167791707,0.043871184251631945,0.041993205157451426,0.05737704918032787,0.35977529312339507,0.39426359704542213,0.04580520732883317,0.13541178498130552,0.20873412933148344,0.4811957569913211,0.0012949976582119248,3.988378368151557e-06,0.0028929604628736743,0.44546279148590373,0.3286725845213689,0.05785920925747348
|
| 26 |
+
N043_FU1,FU1,0.34028257129552253,0.5932926693090818,0.26646367868947907,0.45018761119678385,0.6290342352827079,0.019948064699906613,0.11012389806785151,0.1638056444573756,0.09823114388664948,0.07315602210561756,0.06779167878964212,0.4225666068486642,0.45991216629029413,0.5728833284841431,0.18159925263121984,0.16219108910768393,0.14896712249054408,0.0010193836717790523,3.03986898399728e-06,0.0034914169333721268,0.2766355482617806,0.19461378455956893,0.043060808844922895
|