Archive 4 checkpoints (1-4)

paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/results/imperial_eskd/fewshot_draw0_cibersortx/summary.json

@@ -0,0 +1,157 @@
+{
+ "dataset": "imperial_eskd",
+ "comparison": "fewshot",
+ "draw": 0,
+ "gene_mode": "cibersortx",
+ "stored_scores": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/imperial_eskd/fewshot_n5/draw0",
+ "lora_arm": "lora5",
+ "n_donors": 142,
+ "contrast": true,
+ "genes_scoring": 5927,
+ "genes_covered_by_Z_all_donors": 5727,
+ "bayesprism": {
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+  "comp_l1_by_variant": {
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+   },
+   "final_mrna": {
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+    "NK cell": 0.1119,
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+   },
+   "first_mrna": {
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+    "B cell": 0.0559,
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+    "NK cell": 0.1119,
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+  "partial_r_mean_cp10k": 0.07369220211962717,
+  "logfc_r_mean_cp10k_covered_genes": 0.3691743319993597,
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+  "deg_top50_sum_covered_genes": 32,
+  "per_type_logfc_r": {
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+   "B cell": 0.0538,
+   "Monocyte": 0.7111,
+   "NK cell": 0.1679
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+ },
+ "observed_mean_fraction": {
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+  "B cell": 0.1262,
+  "Monocyte": 0.1645,
+  "NK cell": 0.1734,
+  "DC": 0.0298,
+  "Other": 0.0127
+ },
+ "lora": {
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+  "deg_top50_sum": 116,
+  "partial_r_mean_cp10k": 0.6572469324283057
+ },
+ "broadcast": {
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+  "logfc_r_mean_cp10k_covered_genes": 0.6235197879814423,
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+ "other_arms": {
+  "zs_raw": {
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+   "logfc_r_mean_cp10k": 0.6562152314847065,
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+  "zs_pseudo": {
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+ "gates": {
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+  "broadcast_r_equal": true,
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+ "method": "cibersortx",
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+ "n_case": 102,
+ "n_control": 31,
+ "deg_per_type": {
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+  "covered": {
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+    "Monocyte": 24,
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+    "DC": 2
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+  }
+ },
+ "hires_imputed_genes": {
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+  "fewshot0|B cell": 1913,
+  "fewshot0|Monocyte": 3204,
+  "fewshot0|NK cell": 1914,
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+  "fewshot0|Other": 641
+ },
+ "tool_sha256": "b541f68dc286497e8347d487af58ff3550a383d126eeabe347c0726e4fb28799",
+ "score_ft_sha256": "ec5f40b4cea6d5062d0138f3b934abb6465e34cbfeac869c8a0906924c033aec",
+ "seconds": 2.4
+}

paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/results/imperial_eskd/fewshot_draw0_full/contrast.csv

@@ -0,0 +1,17 @@
+genes,celltype,statistic,n_genes,r_generated,r_broadcast,partial_r_generated_given_broadcast,r_generated_vs_broadcast
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+zero_filled,Monocyte,mean_cp10k,2882,0.7794221462121851,0.7641972589048694,0.3575072503395272,0.8724786833288181
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+zero_filled,NK cell,pseudobulk_log1p_cpm,2972,0.5731361487939856,0.5900041444062439,0.15598612092655417,0.8638961975153925
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+covered,NK cell,mean_cp10k,2790,0.6779527243934375,0.6254226363758821,0.34755050740306503,0.8708558527364455
+covered,NK cell,pseudobulk_log1p_cpm,2790,0.5885982345797705,0.5862273962319908,0.18611783339755497,0.8836160057507317

paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/results/imperial_eskd/fewshot_draw0_full/per_donor.csv

@@ -0,0 +1,143 @@
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paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/results/imperial_eskd/fewshot_draw0_full/summary.json

@@ -0,0 +1,147 @@
+{
+ "dataset": "imperial_eskd",
+ "comparison": "fewshot",
+ "draw": 0,
+ "gene_mode": "full",
+ "stored_scores": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/imperial_eskd/fewshot_n5/draw0",
+ "lora_arm": "lora5",
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