Archive 4 checkpoints (1-4)
Browse files- paper-releases/pbisc-diffusion/updates/20261015T121654Z-x1-nine-core40-deck/diffusion/dataset/server_1/model8/presentations/2026-09-30--paper-summary--r00/data/x1_priority_20261015/builds/20261015T120743086141Z/sources/1e2040dde2f698cf/manifest.json +562 -0
- paper-releases/pbisc-diffusion/updates/20261015T121654Z-x1-nine-core40-deck/diffusion/dataset/server_1/model8/presentations/2026-09-30--paper-summary--r00/data/x1_priority_20261015/builds/20261015T120743086141Z/sources/8abe1204445063ea/support.json +101 -0
- paper-releases/pbisc-diffusion/updates/20261015T121654Z-x1-nine-core40-deck/diffusion/dataset/server_1/model8/presentations/2026-09-30--paper-summary--r00/data/x1_priority_20261015/builds/20261015T120743086141Z/sources/c148357c2b2207ca/score.json +61 -0
- paper-releases/pbisc-diffusion/updates/20261015T121654Z-x1-nine-core40-deck/diffusion/dataset/server_1/model8/presentations/2026-09-30--paper-summary--r00/data/x1_priority_20261015/builds/20261015T120743086141Z/sources/c678141da4c7f923/manifest.json +562 -0
paper-releases/pbisc-diffusion/updates/20261015T121654Z-x1-nine-core40-deck/diffusion/dataset/server_1/model8/presentations/2026-09-30--paper-summary--r00/data/x1_priority_20261015/builds/20261015T120743086141Z/sources/1e2040dde2f698cf/manifest.json
ADDED
|
@@ -0,0 +1,562 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"schema": "paired_ft_contrast_extra.v1",
|
| 3 |
+
"dataset": "ye2026_sepsis",
|
| 4 |
+
"design": "scored",
|
| 5 |
+
"unit": "strict",
|
| 6 |
+
"written_utc": "2026-10-12T16:43:43.234189+00:00",
|
| 7 |
+
"command": [
|
| 8 |
+
"/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/tools/score_strict.py",
|
| 9 |
+
"--support-manifest",
|
| 10 |
+
"/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/protocol/splits/ye2026_sepsis/disease/draw2/support.json",
|
| 11 |
+
"--out",
|
| 12 |
+
"/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/scores/ye2026_sepsis/disease/draw2",
|
| 13 |
+
"--action",
|
| 14 |
+
"all",
|
| 15 |
+
"--threads",
|
| 16 |
+
"4",
|
| 17 |
+
"--arm",
|
| 18 |
+
"lora=/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/generated/ye2026_sepsis/disease/draw2/lora.npz",
|
| 19 |
+
"--arm",
|
| 20 |
+
"pairedcal=/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/generated/ye2026_sepsis/disease/draw2/pairedcal.npz",
|
| 21 |
+
"--arm",
|
| 22 |
+
"scsemi=/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/generated/ye2026_sepsis/disease/draw2/scsemi.npz",
|
| 23 |
+
"--arm",
|
| 24 |
+
"raw=/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/generated/global/ye2026_sepsis/raw.npz",
|
| 25 |
+
"--arm",
|
| 26 |
+
"refcal=/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/generated/global/ye2026_sepsis/refcal.npz"
|
| 27 |
+
],
|
| 28 |
+
"threads": 4,
|
| 29 |
+
"donors": [
|
| 30 |
+
"Abd-PS04",
|
| 31 |
+
"Abd-PS05",
|
| 32 |
+
"Abd-PS07",
|
| 33 |
+
"Abd-PS19",
|
| 34 |
+
"Abd-PS20",
|
| 35 |
+
"Abd-PS23",
|
| 36 |
+
"Abd-PS27",
|
| 37 |
+
"Abd-S102",
|
| 38 |
+
"Abd-S103",
|
| 39 |
+
"Abd-S120",
|
| 40 |
+
"Abd-S123",
|
| 41 |
+
"Abd-S156",
|
| 42 |
+
"Abd-S39",
|
| 43 |
+
"Abd-S42",
|
| 44 |
+
"Abd-S47",
|
| 45 |
+
"Abd-S51",
|
| 46 |
+
"Abd-S54",
|
| 47 |
+
"Abd-S57",
|
| 48 |
+
"Abd-S66",
|
| 49 |
+
"Abd-S79",
|
| 50 |
+
"Abd-S83",
|
| 51 |
+
"Abd-S98",
|
| 52 |
+
"HC01",
|
| 53 |
+
"HC05",
|
| 54 |
+
"HC07",
|
| 55 |
+
"HC09",
|
| 56 |
+
"HC12",
|
| 57 |
+
"HC13",
|
| 58 |
+
"HC16",
|
| 59 |
+
"IC10",
|
| 60 |
+
"IC15",
|
| 61 |
+
"IC16",
|
| 62 |
+
"IC19",
|
| 63 |
+
"IC22",
|
| 64 |
+
"IC23",
|
| 65 |
+
"PHC01",
|
| 66 |
+
"PHC02",
|
| 67 |
+
"PHC03",
|
| 68 |
+
"PHC05",
|
| 69 |
+
"PIC02",
|
| 70 |
+
"PIC04",
|
| 71 |
+
"PIC05",
|
| 72 |
+
"Res-PS02",
|
| 73 |
+
"Res-PS03",
|
| 74 |
+
"Res-PS12",
|
| 75 |
+
"Res-PS16",
|
| 76 |
+
"Res-PS21",
|
| 77 |
+
"Res-PS22",
|
| 78 |
+
"Res-PS25",
|
| 79 |
+
"Res-PS26",
|
| 80 |
+
"Res-S10",
|
| 81 |
+
"Res-S125",
|
| 82 |
+
"Res-S127",
|
| 83 |
+
"Res-S139",
|
| 84 |
+
"Res-S146",
|
| 85 |
+
"Res-S149",
|
| 86 |
+
"Res-S150",
|
| 87 |
+
"Res-S164",
|
| 88 |
+
"Res-S166",
|
| 89 |
+
"Res-S174",
|
| 90 |
+
"Res-S184",
|
| 91 |
+
"Res-S19",
|
| 92 |
+
"Res-S26",
|
| 93 |
+
"Res-S40",
|
| 94 |
+
"Res-S87",
|
| 95 |
+
"Skin-S140",
|
| 96 |
+
"Skin-S142",
|
| 97 |
+
"Skin-S152",
|
| 98 |
+
"Skin-S38",
|
| 99 |
+
"Skin-S43",
|
| 100 |
+
"Skin-S46",
|
| 101 |
+
"Skin-S52",
|
| 102 |
+
"Uri-S134",
|
| 103 |
+
"Uri-S147",
|
| 104 |
+
"Uri-S157",
|
| 105 |
+
"Uri-S20",
|
| 106 |
+
"Uri-S93"
|
| 107 |
+
],
|
| 108 |
+
"n_samples": 77,
|
| 109 |
+
"contrast": {
|
| 110 |
+
"case_groups": [
|
| 111 |
+
"adult_sepsis",
|
| 112 |
+
"ped_sepsis"
|
| 113 |
+
],
|
| 114 |
+
"control_groups": [
|
| 115 |
+
"adult_HC",
|
| 116 |
+
"adult_ICU_ctrl",
|
| 117 |
+
"ped_HC",
|
| 118 |
+
"ped_ICU_ctrl"
|
| 119 |
+
],
|
| 120 |
+
"n_case_donors": 57,
|
| 121 |
+
"n_control_donors": 20
|
| 122 |
+
},
|
| 123 |
+
"calls": {
|
| 124 |
+
"/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/scores/ye2026_sepsis/disease/draw2/score": {
|
| 125 |
+
"arms": [
|
| 126 |
+
"lora",
|
| 127 |
+
"pairedcal",
|
| 128 |
+
"scsemi",
|
| 129 |
+
"raw",
|
| 130 |
+
"refcal"
|
| 131 |
+
],
|
| 132 |
+
"summary_sha256": "b5d9d1d3a0f5af919c9da94588e0d238c217fb6b6aff3250c21af8c9e25eb3ce",
|
| 133 |
+
"contrast_csv_sha256": "20b72c34d1e1f5ac6a8ca39ee25c2a55d4230172a50146bc3eff4d7ba85308a5"
|
| 134 |
+
}
|
| 135 |
+
},
|
| 136 |
+
"notes": {
|
| 137 |
+
"source_tree": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores"
|
| 138 |
+
},
|
| 139 |
+
"reference_sha256": "bac12da8a241652cb75100a1b082b2be56806c9bf2fd20ce6f927f19683ea5b8",
|
| 140 |
+
"deg_reference": {
|
| 141 |
+
"source": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scoring_cache/ye2026_sepsis/deg_reference.npz",
|
| 142 |
+
"sha256": "9886ea64da90b1db6a07984d5d61d7dab04ee0beee7d4094ee3672316c2691d0"
|
| 143 |
+
},
|
| 144 |
+
"gene_exclusion": null,
|
| 145 |
+
"n_genes_disease_scores": 5975,
|
| 146 |
+
"genes_per_type": {
|
| 147 |
+
"T cell": 3250,
|
| 148 |
+
"B cell": 3308,
|
| 149 |
+
"Monocyte": 3287,
|
| 150 |
+
"NK cell": 3233
|
| 151 |
+
},
|
| 152 |
+
"arms": {
|
| 153 |
+
"lora": {
|
| 154 |
+
"call": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/scores/ye2026_sepsis/disease/draw2/score",
|
| 155 |
+
"npz": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/generated/ye2026_sepsis/disease/draw2/lora.npz",
|
| 156 |
+
"npz_read_from": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/generated/ye2026_sepsis/disease/draw2/lora.npz",
|
| 157 |
+
"npz_sha256": "ee517a12eea1c5e67a1682caf3a8a6cb72895203214422f9a15ad3db3a950b11",
|
| 158 |
+
"receipt_verified": true,
|
| 159 |
+
"condition": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/data/ye2026_sepsis/disease/draw2/test_raw.npz",
|
| 160 |
+
"condition_sha256": "a7f4df1f36bb0f35a331030f36e42e6b1b6fb02de7471eca430bceceb884b82f",
|
| 161 |
+
"condition_label": "test_raw.npz@a7f4df1f",
|
| 162 |
+
"condition_read_from": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/data/ye2026_sepsis/disease/draw2/test_raw.npz",
|
| 163 |
+
"condition_key": "bcast:a7f4df1f36bb0f35",
|
| 164 |
+
"n_generated_cells": 115500,
|
| 165 |
+
"label": "lora",
|
| 166 |
+
"seconds": 12.2
|
| 167 |
+
},
|
| 168 |
+
"pairedcal": {
|
| 169 |
+
"call": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/scores/ye2026_sepsis/disease/draw2/score",
|
| 170 |
+
"npz": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/generated/ye2026_sepsis/disease/draw2/pairedcal.npz",
|
| 171 |
+
"npz_read_from": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/generated/ye2026_sepsis/disease/draw2/pairedcal.npz",
|
| 172 |
+
"npz_sha256": "69c4c71131a0dd07875dee834ff64c0245fb780c22b2933487e259c5cce30c09",
|
| 173 |
+
"receipt_verified": true,
|
| 174 |
+
"condition": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/data/ye2026_sepsis/disease/draw2/test_cal.npz",
|
| 175 |
+
"condition_sha256": "e1f35eed2826765c6ff9eff20b4939be0fb8670bd1a3b93ccf0a360c268f70b7",
|
| 176 |
+
"condition_label": "test_cal.npz@e1f35eed",
|
| 177 |
+
"condition_read_from": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/data/ye2026_sepsis/disease/draw2/test_cal.npz",
|
| 178 |
+
"condition_key": "bcast:e1f35eed2826765c",
|
| 179 |
+
"n_generated_cells": 115500,
|
| 180 |
+
"label": "pairedcal",
|
| 181 |
+
"seconds": 12.0
|
| 182 |
+
},
|
| 183 |
+
"scsemi": {
|
| 184 |
+
"call": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/scores/ye2026_sepsis/disease/draw2/score",
|
| 185 |
+
"npz": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/generated/ye2026_sepsis/disease/draw2/scsemi.npz",
|
| 186 |
+
"npz_read_from": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/generated/ye2026_sepsis/disease/draw2/scsemi.npz",
|
| 187 |
+
"npz_sha256": "6662fd4e121f2bd53d907cfb36f2500a15efab7e36670eb2ce7cecc7f543bc86",
|
| 188 |
+
"receipt_verified": true,
|
| 189 |
+
"condition": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/data/ye2026_sepsis/fewshot_n5/draw2/test_raw.npz",
|
| 190 |
+
"condition_sha256": "a7f4df1f36bb0f35a331030f36e42e6b1b6fb02de7471eca430bceceb884b82f",
|
| 191 |
+
"condition_label": "test_raw.npz@a7f4df1f",
|
| 192 |
+
"condition_read_from": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/data/ye2026_sepsis/fewshot_n5/draw2/test_raw.npz",
|
| 193 |
+
"condition_key": "bcast:a7f4df1f36bb0f35",
|
| 194 |
+
"n_generated_cells": 115500,
|
| 195 |
+
"label": "scsemi",
|
| 196 |
+
"seconds": 9.2
|
| 197 |
+
},
|
| 198 |
+
"raw": {
|
| 199 |
+
"call": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/scores/ye2026_sepsis/disease/draw2/score",
|
| 200 |
+
"npz": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/generated/global/ye2026_sepsis/raw.npz",
|
| 201 |
+
"npz_read_from": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/generated/global/ye2026_sepsis/raw.npz",
|
| 202 |
+
"npz_sha256": "665afa80f7749e56ee7a1c60d8452bff22a53e7bfcf87254c8e92d4d79c62b2a",
|
| 203 |
+
"receipt_verified": true,
|
| 204 |
+
"condition": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/data/external_refcal/ye2026_sepsis/conditions_raw.npz",
|
| 205 |
+
"condition_sha256": "36add186da47d10c067d7a1f0641fabf3ddba64d5e65168c5975e1e3a448c9cd",
|
| 206 |
+
"condition_label": "conditions_raw.npz@36add186",
|
| 207 |
+
"condition_read_from": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/data/external_refcal/ye2026_sepsis/conditions_raw.npz",
|
| 208 |
+
"condition_key": "bcast:36add186da47d10c",
|
| 209 |
+
"n_generated_cells": 115500,
|
| 210 |
+
"label": "raw",
|
| 211 |
+
"seconds": 13.9
|
| 212 |
+
},
|
| 213 |
+
"refcal": {
|
| 214 |
+
"call": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/scores/ye2026_sepsis/disease/draw2/score",
|
| 215 |
+
"npz": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/generated/global/ye2026_sepsis/refcal.npz",
|
| 216 |
+
"npz_read_from": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/generated/global/ye2026_sepsis/refcal.npz",
|
| 217 |
+
"npz_sha256": "64784052e0289e347e2799523b4aa4ab07b16ddba6a54353a6011d9e77852891",
|
| 218 |
+
"receipt_verified": true,
|
| 219 |
+
"condition": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/data/external_refcal/ye2026_sepsis/conditions_refcal.npz",
|
| 220 |
+
"condition_sha256": "3886924bfe4926914677850db7dac8a77a38bb0c0fc1a30ee663b2587eabc7dd",
|
| 221 |
+
"condition_label": "conditions_refcal.npz@3886924b",
|
| 222 |
+
"condition_read_from": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/data/external_refcal/ye2026_sepsis/conditions_refcal.npz",
|
| 223 |
+
"condition_key": "bcast:3886924bfe492691",
|
| 224 |
+
"n_generated_cells": 115500,
|
| 225 |
+
"label": "refcal",
|
| 226 |
+
"seconds": 12.2
|
| 227 |
+
}
|
| 228 |
+
},
|
| 229 |
+
"observed_cells": {
|
| 230 |
+
"inputs_sha256": {
|
| 231 |
+
"/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/data/ye2026_sepsis/cells_panel6k.npz": "c814b53d04ffdbe8e257f1fb35df80e7945479db95a924774522b9a967745280",
|
| 232 |
+
"/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/data/ye2026_sepsis/cells_obs.parquet": "f21b34faaa06d3ba71f2538ec7367836879d59a5c44a820ad8e6ad90bffd4eb7"
|
| 233 |
+
},
|
| 234 |
+
"labels_sha256": "ab27c027a75b7cd47ec8267d4b33bfe41e8cb6ab64190a3592db1cffa2a73ea7",
|
| 235 |
+
"n_cells_4types_scored": 529187
|
| 236 |
+
},
|
| 237 |
+
"params": {
|
| 238 |
+
"split_seeds": [
|
| 239 |
+
20260926,
|
| 240 |
+
20260927,
|
| 241 |
+
20260928,
|
| 242 |
+
20260929,
|
| 243 |
+
20260930
|
| 244 |
+
],
|
| 245 |
+
"split_rule": "per scored sample x contrast type: permutation from default_rng([seed, uint64 LE of sha256('<sample>|<type>')[:8]]) of its cells in canonical order; half A = first floor(n/2) positions, half B = the rest",
|
| 246 |
+
"cat_ks": [
|
| 247 |
+
10,
|
| 248 |
+
20,
|
| 249 |
+
50,
|
| 250 |
+
100,
|
| 251 |
+
200,
|
| 252 |
+
500
|
| 253 |
+
],
|
| 254 |
+
"rbo_p": 0.98,
|
| 255 |
+
"limma_filters": [
|
| 256 |
+
"nonzero",
|
| 257 |
+
"filterByExpr"
|
| 258 |
+
],
|
| 259 |
+
"primary_filter": "nonzero",
|
| 260 |
+
"fdr": 0.05,
|
| 261 |
+
"top_n": 50,
|
| 262 |
+
"min_detect_frac": 0.01,
|
| 263 |
+
"poisson_seed": 20260916,
|
| 264 |
+
"repro_tol": 1e-09
|
| 265 |
+
},
|
| 266 |
+
"limma": {
|
| 267 |
+
"rscript": "/home/sj_server_1/miniforge3/bin/Rscript",
|
| 268 |
+
"versions": [
|
| 269 |
+
"R version 4.5.2 (2025-10-31)",
|
| 270 |
+
"limma 3.66.0",
|
| 271 |
+
"edgeR 4.8.1"
|
| 272 |
+
],
|
| 273 |
+
"n_jobs": 68,
|
| 274 |
+
"n_not_ok": 0,
|
| 275 |
+
"seconds": 16.6,
|
| 276 |
+
"job_matrices": {
|
| 277 |
+
"obs|T cell": {
|
| 278 |
+
"key": "obs|T cell",
|
| 279 |
+
"n_samples": 77,
|
| 280 |
+
"n_case": 57,
|
| 281 |
+
"n_control": 20,
|
| 282 |
+
"n_zero_library_dropped": 0,
|
| 283 |
+
"defined": true
|
| 284 |
+
},
|
| 285 |
+
"obs|B cell": {
|
| 286 |
+
"key": "obs|B cell",
|
| 287 |
+
"n_samples": 77,
|
| 288 |
+
"n_case": 57,
|
| 289 |
+
"n_control": 20,
|
| 290 |
+
"n_zero_library_dropped": 0,
|
| 291 |
+
"defined": true
|
| 292 |
+
},
|
| 293 |
+
"obs|Monocyte": {
|
| 294 |
+
"key": "obs|Monocyte",
|
| 295 |
+
"n_samples": 77,
|
| 296 |
+
"n_case": 57,
|
| 297 |
+
"n_control": 20,
|
| 298 |
+
"n_zero_library_dropped": 0,
|
| 299 |
+
"defined": true
|
| 300 |
+
},
|
| 301 |
+
"obs|NK cell": {
|
| 302 |
+
"key": "obs|NK cell",
|
| 303 |
+
"n_samples": 77,
|
| 304 |
+
"n_case": 57,
|
| 305 |
+
"n_control": 20,
|
| 306 |
+
"n_zero_library_dropped": 0,
|
| 307 |
+
"defined": true
|
| 308 |
+
},
|
| 309 |
+
"obs|DC": {
|
| 310 |
+
"key": "obs|DC",
|
| 311 |
+
"n_samples": 73,
|
| 312 |
+
"n_case": 53,
|
| 313 |
+
"n_control": 20,
|
| 314 |
+
"n_zero_library_dropped": 0,
|
| 315 |
+
"defined": true
|
| 316 |
+
},
|
| 317 |
+
"gen:lora|T cell": {
|
| 318 |
+
"key": "gen:lora|T cell",
|
| 319 |
+
"n_samples": 77,
|
| 320 |
+
"n_case": 57,
|
| 321 |
+
"n_control": 20,
|
| 322 |
+
"n_zero_library_dropped": 0,
|
| 323 |
+
"defined": true
|
| 324 |
+
},
|
| 325 |
+
"gen:lora|B cell": {
|
| 326 |
+
"key": "gen:lora|B cell",
|
| 327 |
+
"n_samples": 77,
|
| 328 |
+
"n_case": 57,
|
| 329 |
+
"n_control": 20,
|
| 330 |
+
"n_zero_library_dropped": 0,
|
| 331 |
+
"defined": true
|
| 332 |
+
},
|
| 333 |
+
"gen:lora|Monocyte": {
|
| 334 |
+
"key": "gen:lora|Monocyte",
|
| 335 |
+
"n_samples": 75,
|
| 336 |
+
"n_case": 55,
|
| 337 |
+
"n_control": 20,
|
| 338 |
+
"n_zero_library_dropped": 0,
|
| 339 |
+
"defined": true
|
| 340 |
+
},
|
| 341 |
+
"gen:lora|NK cell": {
|
| 342 |
+
"key": "gen:lora|NK cell",
|
| 343 |
+
"n_samples": 77,
|
| 344 |
+
"n_case": 57,
|
| 345 |
+
"n_control": 20,
|
| 346 |
+
"n_zero_library_dropped": 0,
|
| 347 |
+
"defined": true
|
| 348 |
+
},
|
| 349 |
+
"gen:lora|DC": {
|
| 350 |
+
"key": "gen:lora|DC",
|
| 351 |
+
"n_samples": 54,
|
| 352 |
+
"n_case": 35,
|
| 353 |
+
"n_control": 19,
|
| 354 |
+
"n_zero_library_dropped": 0,
|
| 355 |
+
"defined": true
|
| 356 |
+
},
|
| 357 |
+
"bcast:a7f4df1f36bb0f35": {
|
| 358 |
+
"key": "bcast:a7f4df1f36bb0f35",
|
| 359 |
+
"n_samples": 77,
|
| 360 |
+
"n_case": 57,
|
| 361 |
+
"n_control": 20,
|
| 362 |
+
"n_zero_library_dropped": 0,
|
| 363 |
+
"defined": true
|
| 364 |
+
},
|
| 365 |
+
"gen:pairedcal|T cell": {
|
| 366 |
+
"key": "gen:pairedcal|T cell",
|
| 367 |
+
"n_samples": 77,
|
| 368 |
+
"n_case": 57,
|
| 369 |
+
"n_control": 20,
|
| 370 |
+
"n_zero_library_dropped": 0,
|
| 371 |
+
"defined": true
|
| 372 |
+
},
|
| 373 |
+
"gen:pairedcal|B cell": {
|
| 374 |
+
"key": "gen:pairedcal|B cell",
|
| 375 |
+
"n_samples": 77,
|
| 376 |
+
"n_case": 57,
|
| 377 |
+
"n_control": 20,
|
| 378 |
+
"n_zero_library_dropped": 0,
|
| 379 |
+
"defined": true
|
| 380 |
+
},
|
| 381 |
+
"gen:pairedcal|Monocyte": {
|
| 382 |
+
"key": "gen:pairedcal|Monocyte",
|
| 383 |
+
"n_samples": 77,
|
| 384 |
+
"n_case": 57,
|
| 385 |
+
"n_control": 20,
|
| 386 |
+
"n_zero_library_dropped": 0,
|
| 387 |
+
"defined": true
|
| 388 |
+
},
|
| 389 |
+
"gen:pairedcal|NK cell": {
|
| 390 |
+
"key": "gen:pairedcal|NK cell",
|
| 391 |
+
"n_samples": 77,
|
| 392 |
+
"n_case": 57,
|
| 393 |
+
"n_control": 20,
|
| 394 |
+
"n_zero_library_dropped": 0,
|
| 395 |
+
"defined": true
|
| 396 |
+
},
|
| 397 |
+
"gen:pairedcal|DC": {
|
| 398 |
+
"key": "gen:pairedcal|DC",
|
| 399 |
+
"n_samples": 76,
|
| 400 |
+
"n_case": 56,
|
| 401 |
+
"n_control": 20,
|
| 402 |
+
"n_zero_library_dropped": 0,
|
| 403 |
+
"defined": true
|
| 404 |
+
},
|
| 405 |
+
"bcast:e1f35eed2826765c": {
|
| 406 |
+
"key": "bcast:e1f35eed2826765c",
|
| 407 |
+
"n_samples": 77,
|
| 408 |
+
"n_case": 57,
|
| 409 |
+
"n_control": 20,
|
| 410 |
+
"n_zero_library_dropped": 0,
|
| 411 |
+
"defined": true
|
| 412 |
+
},
|
| 413 |
+
"gen:scsemi|T cell": {
|
| 414 |
+
"key": "gen:scsemi|T cell",
|
| 415 |
+
"n_samples": 77,
|
| 416 |
+
"n_case": 57,
|
| 417 |
+
"n_control": 20,
|
| 418 |
+
"n_zero_library_dropped": 0,
|
| 419 |
+
"defined": true
|
| 420 |
+
},
|
| 421 |
+
"gen:scsemi|B cell": {
|
| 422 |
+
"key": "gen:scsemi|B cell",
|
| 423 |
+
"n_samples": 76,
|
| 424 |
+
"n_case": 56,
|
| 425 |
+
"n_control": 20,
|
| 426 |
+
"n_zero_library_dropped": 0,
|
| 427 |
+
"defined": true
|
| 428 |
+
},
|
| 429 |
+
"gen:scsemi|Monocyte": {
|
| 430 |
+
"key": "gen:scsemi|Monocyte",
|
| 431 |
+
"n_samples": 75,
|
| 432 |
+
"n_case": 55,
|
| 433 |
+
"n_control": 20,
|
| 434 |
+
"n_zero_library_dropped": 0,
|
| 435 |
+
"defined": true
|
| 436 |
+
},
|
| 437 |
+
"gen:scsemi|NK cell": {
|
| 438 |
+
"key": "gen:scsemi|NK cell",
|
| 439 |
+
"n_samples": 64,
|
| 440 |
+
"n_case": 47,
|
| 441 |
+
"n_control": 17,
|
| 442 |
+
"n_zero_library_dropped": 0,
|
| 443 |
+
"defined": true
|
| 444 |
+
},
|
| 445 |
+
"gen:scsemi|DC": {
|
| 446 |
+
"key": "gen:scsemi|DC",
|
| 447 |
+
"n_samples": 73,
|
| 448 |
+
"n_case": 55,
|
| 449 |
+
"n_control": 18,
|
| 450 |
+
"n_zero_library_dropped": 0,
|
| 451 |
+
"defined": true
|
| 452 |
+
},
|
| 453 |
+
"gen:raw|T cell": {
|
| 454 |
+
"key": "gen:raw|T cell",
|
| 455 |
+
"n_samples": 77,
|
| 456 |
+
"n_case": 57,
|
| 457 |
+
"n_control": 20,
|
| 458 |
+
"n_zero_library_dropped": 0,
|
| 459 |
+
"defined": true
|
| 460 |
+
},
|
| 461 |
+
"gen:raw|B cell": {
|
| 462 |
+
"key": "gen:raw|B cell",
|
| 463 |
+
"n_samples": 77,
|
| 464 |
+
"n_case": 57,
|
| 465 |
+
"n_control": 20,
|
| 466 |
+
"n_zero_library_dropped": 0,
|
| 467 |
+
"defined": true
|
| 468 |
+
},
|
| 469 |
+
"gen:raw|Monocyte": {
|
| 470 |
+
"key": "gen:raw|Monocyte",
|
| 471 |
+
"n_samples": 77,
|
| 472 |
+
"n_case": 57,
|
| 473 |
+
"n_control": 20,
|
| 474 |
+
"n_zero_library_dropped": 0,
|
| 475 |
+
"defined": true
|
| 476 |
+
},
|
| 477 |
+
"gen:raw|NK cell": {
|
| 478 |
+
"key": "gen:raw|NK cell",
|
| 479 |
+
"n_samples": 77,
|
| 480 |
+
"n_case": 57,
|
| 481 |
+
"n_control": 20,
|
| 482 |
+
"n_zero_library_dropped": 0,
|
| 483 |
+
"defined": true
|
| 484 |
+
},
|
| 485 |
+
"gen:raw|DC": {
|
| 486 |
+
"key": "gen:raw|DC",
|
| 487 |
+
"n_samples": 77,
|
| 488 |
+
"n_case": 57,
|
| 489 |
+
"n_control": 20,
|
| 490 |
+
"n_zero_library_dropped": 0,
|
| 491 |
+
"defined": true
|
| 492 |
+
},
|
| 493 |
+
"bcast:36add186da47d10c": {
|
| 494 |
+
"key": "bcast:36add186da47d10c",
|
| 495 |
+
"n_samples": 77,
|
| 496 |
+
"n_case": 57,
|
| 497 |
+
"n_control": 20,
|
| 498 |
+
"n_zero_library_dropped": 0,
|
| 499 |
+
"defined": true
|
| 500 |
+
},
|
| 501 |
+
"gen:refcal|T cell": {
|
| 502 |
+
"key": "gen:refcal|T cell",
|
| 503 |
+
"n_samples": 77,
|
| 504 |
+
"n_case": 57,
|
| 505 |
+
"n_control": 20,
|
| 506 |
+
"n_zero_library_dropped": 0,
|
| 507 |
+
"defined": true
|
| 508 |
+
},
|
| 509 |
+
"gen:refcal|B cell": {
|
| 510 |
+
"key": "gen:refcal|B cell",
|
| 511 |
+
"n_samples": 77,
|
| 512 |
+
"n_case": 57,
|
| 513 |
+
"n_control": 20,
|
| 514 |
+
"n_zero_library_dropped": 0,
|
| 515 |
+
"defined": true
|
| 516 |
+
},
|
| 517 |
+
"gen:refcal|Monocyte": {
|
| 518 |
+
"key": "gen:refcal|Monocyte",
|
| 519 |
+
"n_samples": 77,
|
| 520 |
+
"n_case": 57,
|
| 521 |
+
"n_control": 20,
|
| 522 |
+
"n_zero_library_dropped": 0,
|
| 523 |
+
"defined": true
|
| 524 |
+
},
|
| 525 |
+
"gen:refcal|NK cell": {
|
| 526 |
+
"key": "gen:refcal|NK cell",
|
| 527 |
+
"n_samples": 77,
|
| 528 |
+
"n_case": 57,
|
| 529 |
+
"n_control": 20,
|
| 530 |
+
"n_zero_library_dropped": 0,
|
| 531 |
+
"defined": true
|
| 532 |
+
},
|
| 533 |
+
"gen:refcal|DC": {
|
| 534 |
+
"key": "gen:refcal|DC",
|
| 535 |
+
"n_samples": 77,
|
| 536 |
+
"n_case": 57,
|
| 537 |
+
"n_control": 20,
|
| 538 |
+
"n_zero_library_dropped": 0,
|
| 539 |
+
"defined": true
|
| 540 |
+
},
|
| 541 |
+
"bcast:3886924bfe492691": {
|
| 542 |
+
"key": "bcast:3886924bfe492691",
|
| 543 |
+
"n_samples": 77,
|
| 544 |
+
"n_case": 57,
|
| 545 |
+
"n_control": 20,
|
| 546 |
+
"n_zero_library_dropped": 0,
|
| 547 |
+
"defined": true
|
| 548 |
+
}
|
| 549 |
+
}
|
| 550 |
+
},
|
| 551 |
+
"repro_all_pass": true,
|
| 552 |
+
"split_half_seconds": 11.0,
|
| 553 |
+
"fetched_from_server2": [],
|
| 554 |
+
"code_sha256": {
|
| 555 |
+
"/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/tools/contrast_extra.py": "b1ae7ded945177e61c1b2971c419c3adf5f9eb5e8868d427d1ba9d0f15fbf482",
|
| 556 |
+
"/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/tools/contrast_extra_limma.R": "f0685f68ddfc00c01fc842073950981c176d980194de2aa70e324f197989f7dc",
|
| 557 |
+
"/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/tools/ft_common.py": "4a6366b0f22208cd58714fc0261b8840c643b9d4569704d560cfd93534cbc747",
|
| 558 |
+
"/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/tools/score_ft.py": "ec5f40b4cea6d5062d0138f3b934abb6465e34cbfeac869c8a0906924c033aec",
|
| 559 |
+
"/home/sj_server_1/PBISC/immun-pbmc-fm/bulk2sc-paper/scripts/evaluate_generated_vs_truth.py": "48b12d794782b840838853e93e0fc55fab00532c4b3698f4588e926b985d2881"
|
| 560 |
+
},
|
| 561 |
+
"seconds": 87.6
|
| 562 |
+
}
|
paper-releases/pbisc-diffusion/updates/20261015T121654Z-x1-nine-core40-deck/diffusion/dataset/server_1/model8/presentations/2026-09-30--paper-summary--r00/data/x1_priority_20261015/builds/20261015T120743086141Z/sources/8abe1204445063ea/support.json
ADDED
|
@@ -0,0 +1,101 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"schema": "pbisc.paper.strict-support.v1",
|
| 3 |
+
"cohort": "immicro",
|
| 4 |
+
"design": "healthy_outerfold",
|
| 5 |
+
"unit": "fold3_n20",
|
| 6 |
+
"n_pairs": 20,
|
| 7 |
+
"train_sample_ids": [
|
| 8 |
+
"HS59",
|
| 9 |
+
"HS104",
|
| 10 |
+
"HS2",
|
| 11 |
+
"HS25",
|
| 12 |
+
"HS41",
|
| 13 |
+
"HS92",
|
| 14 |
+
"HS76",
|
| 15 |
+
"HS64",
|
| 16 |
+
"HS66",
|
| 17 |
+
"HS9",
|
| 18 |
+
"HS50",
|
| 19 |
+
"HS94",
|
| 20 |
+
"HS101",
|
| 21 |
+
"HS37",
|
| 22 |
+
"HS95",
|
| 23 |
+
"HS47",
|
| 24 |
+
"HS65",
|
| 25 |
+
"HS12",
|
| 26 |
+
"HS102",
|
| 27 |
+
"HS57"
|
| 28 |
+
],
|
| 29 |
+
"train_donor_ids": [
|
| 30 |
+
"HS59",
|
| 31 |
+
"HS104",
|
| 32 |
+
"HS2",
|
| 33 |
+
"HS25",
|
| 34 |
+
"HS41",
|
| 35 |
+
"HS92",
|
| 36 |
+
"HS76",
|
| 37 |
+
"HS64",
|
| 38 |
+
"HS66",
|
| 39 |
+
"HS9",
|
| 40 |
+
"HS50",
|
| 41 |
+
"HS94",
|
| 42 |
+
"HS101",
|
| 43 |
+
"HS37",
|
| 44 |
+
"HS95",
|
| 45 |
+
"HS47",
|
| 46 |
+
"HS65",
|
| 47 |
+
"HS12",
|
| 48 |
+
"HS102",
|
| 49 |
+
"HS57"
|
| 50 |
+
],
|
| 51 |
+
"test_sample_ids": [
|
| 52 |
+
"HS1",
|
| 53 |
+
"HS4",
|
| 54 |
+
"HS10",
|
| 55 |
+
"HS15",
|
| 56 |
+
"HS23",
|
| 57 |
+
"HS29",
|
| 58 |
+
"HS30",
|
| 59 |
+
"HS40",
|
| 60 |
+
"HS49",
|
| 61 |
+
"HS53",
|
| 62 |
+
"HS61",
|
| 63 |
+
"HS62",
|
| 64 |
+
"HS63",
|
| 65 |
+
"HS69",
|
| 66 |
+
"HS78",
|
| 67 |
+
"HS79",
|
| 68 |
+
"HS89",
|
| 69 |
+
"HS90",
|
| 70 |
+
"HS100",
|
| 71 |
+
"HS106",
|
| 72 |
+
"HS110"
|
| 73 |
+
],
|
| 74 |
+
"test_donor_ids": [
|
| 75 |
+
"HS1",
|
| 76 |
+
"HS4",
|
| 77 |
+
"HS10",
|
| 78 |
+
"HS15",
|
| 79 |
+
"HS23",
|
| 80 |
+
"HS29",
|
| 81 |
+
"HS30",
|
| 82 |
+
"HS40",
|
| 83 |
+
"HS49",
|
| 84 |
+
"HS53",
|
| 85 |
+
"HS61",
|
| 86 |
+
"HS62",
|
| 87 |
+
"HS63",
|
| 88 |
+
"HS69",
|
| 89 |
+
"HS78",
|
| 90 |
+
"HS79",
|
| 91 |
+
"HS89",
|
| 92 |
+
"HS90",
|
| 93 |
+
"HS100",
|
| 94 |
+
"HS106",
|
| 95 |
+
"HS110"
|
| 96 |
+
],
|
| 97 |
+
"excluded_sample_ids": [],
|
| 98 |
+
"seed": 20261015,
|
| 99 |
+
"selection_audit": [],
|
| 100 |
+
"sha256": "ae96bceb313de5c71379681084098d5d1288078b47cc602f229d39829510d522"
|
| 101 |
+
}
|
paper-releases/pbisc-diffusion/updates/20261015T121654Z-x1-nine-core40-deck/diffusion/dataset/server_1/model8/presentations/2026-09-30--paper-summary--r00/data/x1_priority_20261015/builds/20261015T120743086141Z/sources/c148357c2b2207ca/score.json
ADDED
|
@@ -0,0 +1,61 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"state": "completed",
|
| 3 |
+
"stage": "score",
|
| 4 |
+
"at": "2026-10-15T11:42:18.145769+00:00",
|
| 5 |
+
"outputs": [
|
| 6 |
+
{
|
| 7 |
+
"path": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/recoveries/x1_priority_completion_20261015/evaluation/units/immicro/healthy/fold2/n5/lora/score/arms/lora/generated_cells.parquet",
|
| 8 |
+
"sha256": "ea7b634f9c7a08d796533c58070623c2f1aa0fd954d6582e9c455d978c4dd532",
|
| 9 |
+
"bytes": 276263
|
| 10 |
+
},
|
| 11 |
+
{
|
| 12 |
+
"path": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/recoveries/x1_priority_completion_20261015/evaluation/units/immicro/healthy/fold2/n5/lora/score/arms/lora/labels/labels.manifest.json",
|
| 13 |
+
"sha256": "ba43d9b72acbdec484759cca19fe7e25968d082616195fb74eb28d274669eaf0",
|
| 14 |
+
"bytes": 5053
|
| 15 |
+
},
|
| 16 |
+
{
|
| 17 |
+
"path": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/recoveries/x1_priority_completion_20261015/evaluation/units/immicro/healthy/fold2/n5/lora/score/arms/lora/labels/labels.parquet",
|
| 18 |
+
"sha256": "0c48e5b6718520683b59c6795bd4ac1e5aff66872c3030cb3bbc4790fe7442b8",
|
| 19 |
+
"bytes": 751788
|
| 20 |
+
},
|
| 21 |
+
{
|
| 22 |
+
"path": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/recoveries/x1_priority_completion_20261015/evaluation/units/immicro/healthy/fold2/n5/lora/score/per_donor.csv",
|
| 23 |
+
"sha256": "479190cb007562e1fe2d3720cca69b586d924ffdd8749a13abe20cb8f7605e65",
|
| 24 |
+
"bytes": 8628
|
| 25 |
+
},
|
| 26 |
+
{
|
| 27 |
+
"path": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/recoveries/x1_priority_completion_20261015/evaluation/units/immicro/healthy/fold2/n5/lora/score/summary.json",
|
| 28 |
+
"sha256": "140b5e451aad71b09b7f331401cb263876f3dc48020f4b1268bbdd22cf31b4a1",
|
| 29 |
+
"bytes": 8496
|
| 30 |
+
},
|
| 31 |
+
{
|
| 32 |
+
"path": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/recoveries/x1_priority_completion_20261015/evaluation/units/immicro/healthy/fold2/n5/lora/scoring_support.json",
|
| 33 |
+
"sha256": "d3e3b956c0c9084687ee36b6a17b74cd9c6713166280b583fcb90bc9bd1ff344",
|
| 34 |
+
"bytes": 2075
|
| 35 |
+
}
|
| 36 |
+
],
|
| 37 |
+
"support_sha256": "bd9c9fcca2102a403eec20242ecd5e3184be33095e3d37a60e0bca1c32c06c7d",
|
| 38 |
+
"binding": {
|
| 39 |
+
"arm": "lora",
|
| 40 |
+
"npz": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/generated/immicro/healthy/fold2/n5/lora.npz",
|
| 41 |
+
"npz_sha256": "9db828f963f7e4f04ede0c3e8d23ecffb5ad522fed0bdb8da3e67b621a265e04",
|
| 42 |
+
"receipt": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/generated/immicro/healthy/fold2/n5/lora.log",
|
| 43 |
+
"receipt_sha256": "27ee0a6fc79dbd7884814777dacf4c71fb10e33a7c4790d44224c84f02feca36",
|
| 44 |
+
"source_binding": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/runs/immicro/healthy/fold2/n5/lora/RUN.json",
|
| 45 |
+
"source_binding_sha256": "f6485b0944f40e535eaf1e9fd108d63aa9375293e569312632ee25d2c8d3b367",
|
| 46 |
+
"condition_npz": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/data/immicro/healthy/fold2/n5/test_raw.npz",
|
| 47 |
+
"condition_sha256": "35792517469285bed0fd17595441952e8f1880f63022e10db66e74dc36cd585f",
|
| 48 |
+
"checkpoint_sha256": "f4bcc2b5d2e63c4303a82f0888983f6760bfee883798284adf6773285c97589a",
|
| 49 |
+
"support_sha256": "bd9c9fcca2102a403eec20242ecd5e3184be33095e3d37a60e0bca1c32c06c7d"
|
| 50 |
+
},
|
| 51 |
+
"reuse": {
|
| 52 |
+
"source_summary": {
|
| 53 |
+
"path": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/recoveries/all_width_results_20261015/immicro/healthy/fold2/n5/score/summary.json",
|
| 54 |
+
"sha256": "5d91950ad7423f54c7276a0ac7032642038de607b04d7ade7c837e5e890d7a20",
|
| 55 |
+
"bytes": 7666
|
| 56 |
+
},
|
| 57 |
+
"source_arm": "lora",
|
| 58 |
+
"validated_support_sha256": "bd9c9fcca2102a403eec20242ecd5e3184be33095e3d37a60e0bca1c32c06c7d",
|
| 59 |
+
"annotation_reexecuted": false
|
| 60 |
+
}
|
| 61 |
+
}
|
paper-releases/pbisc-diffusion/updates/20261015T121654Z-x1-nine-core40-deck/diffusion/dataset/server_1/model8/presentations/2026-09-30--paper-summary--r00/data/x1_priority_20261015/builds/20261015T120743086141Z/sources/c678141da4c7f923/manifest.json
ADDED
|
@@ -0,0 +1,562 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"schema": "paired_ft_contrast_extra.v1",
|
| 3 |
+
"dataset": "ye2026_sepsis",
|
| 4 |
+
"design": "scored",
|
| 5 |
+
"unit": "strict",
|
| 6 |
+
"written_utc": "2026-10-12T15:21:23.484693+00:00",
|
| 7 |
+
"command": [
|
| 8 |
+
"/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/tools/score_strict.py",
|
| 9 |
+
"--support-manifest",
|
| 10 |
+
"/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/protocol/splits/ye2026_sepsis/disease/draw0/support.json",
|
| 11 |
+
"--out",
|
| 12 |
+
"/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/scores/ye2026_sepsis/disease/draw0",
|
| 13 |
+
"--action",
|
| 14 |
+
"all",
|
| 15 |
+
"--threads",
|
| 16 |
+
"4",
|
| 17 |
+
"--arm",
|
| 18 |
+
"lora=/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/generated/ye2026_sepsis/disease/draw0/lora.npz",
|
| 19 |
+
"--arm",
|
| 20 |
+
"pairedcal=/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/generated/ye2026_sepsis/disease/draw0/pairedcal.npz",
|
| 21 |
+
"--arm",
|
| 22 |
+
"scsemi=/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/generated/ye2026_sepsis/disease/draw0/scsemi.npz",
|
| 23 |
+
"--arm",
|
| 24 |
+
"raw=/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/generated/global/ye2026_sepsis/raw.npz",
|
| 25 |
+
"--arm",
|
| 26 |
+
"refcal=/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/generated/global/ye2026_sepsis/refcal.npz"
|
| 27 |
+
],
|
| 28 |
+
"threads": 4,
|
| 29 |
+
"donors": [
|
| 30 |
+
"Abd-PS04",
|
| 31 |
+
"Abd-PS05",
|
| 32 |
+
"Abd-PS07",
|
| 33 |
+
"Abd-PS19",
|
| 34 |
+
"Abd-PS20",
|
| 35 |
+
"Abd-PS23",
|
| 36 |
+
"Abd-PS27",
|
| 37 |
+
"Abd-S102",
|
| 38 |
+
"Abd-S103",
|
| 39 |
+
"Abd-S120",
|
| 40 |
+
"Abd-S123",
|
| 41 |
+
"Abd-S156",
|
| 42 |
+
"Abd-S39",
|
| 43 |
+
"Abd-S42",
|
| 44 |
+
"Abd-S47",
|
| 45 |
+
"Abd-S51",
|
| 46 |
+
"Abd-S54",
|
| 47 |
+
"Abd-S57",
|
| 48 |
+
"Abd-S79",
|
| 49 |
+
"Abd-S83",
|
| 50 |
+
"Abd-S98",
|
| 51 |
+
"HC01",
|
| 52 |
+
"HC05",
|
| 53 |
+
"HC09",
|
| 54 |
+
"HC12",
|
| 55 |
+
"HC13",
|
| 56 |
+
"HC16",
|
| 57 |
+
"IC10",
|
| 58 |
+
"IC15",
|
| 59 |
+
"IC16",
|
| 60 |
+
"IC19",
|
| 61 |
+
"IC22",
|
| 62 |
+
"IC23",
|
| 63 |
+
"PHC01",
|
| 64 |
+
"PHC02",
|
| 65 |
+
"PHC03",
|
| 66 |
+
"PHC05",
|
| 67 |
+
"PIC01",
|
| 68 |
+
"PIC02",
|
| 69 |
+
"PIC04",
|
| 70 |
+
"PIC05",
|
| 71 |
+
"Res-PS02",
|
| 72 |
+
"Res-PS03",
|
| 73 |
+
"Res-PS12",
|
| 74 |
+
"Res-PS16",
|
| 75 |
+
"Res-PS21",
|
| 76 |
+
"Res-PS22",
|
| 77 |
+
"Res-PS25",
|
| 78 |
+
"Res-PS26",
|
| 79 |
+
"Res-S10",
|
| 80 |
+
"Res-S125",
|
| 81 |
+
"Res-S127",
|
| 82 |
+
"Res-S136",
|
| 83 |
+
"Res-S139",
|
| 84 |
+
"Res-S146",
|
| 85 |
+
"Res-S149",
|
| 86 |
+
"Res-S164",
|
| 87 |
+
"Res-S166",
|
| 88 |
+
"Res-S174",
|
| 89 |
+
"Res-S177",
|
| 90 |
+
"Res-S184",
|
| 91 |
+
"Res-S19",
|
| 92 |
+
"Res-S26",
|
| 93 |
+
"Res-S40",
|
| 94 |
+
"Res-S87",
|
| 95 |
+
"Skin-S140",
|
| 96 |
+
"Skin-S142",
|
| 97 |
+
"Skin-S152",
|
| 98 |
+
"Skin-S38",
|
| 99 |
+
"Skin-S43",
|
| 100 |
+
"Skin-S46",
|
| 101 |
+
"Skin-S52",
|
| 102 |
+
"Uri-S134",
|
| 103 |
+
"Uri-S147",
|
| 104 |
+
"Uri-S157",
|
| 105 |
+
"Uri-S20",
|
| 106 |
+
"Uri-S93"
|
| 107 |
+
],
|
| 108 |
+
"n_samples": 77,
|
| 109 |
+
"contrast": {
|
| 110 |
+
"case_groups": [
|
| 111 |
+
"adult_sepsis",
|
| 112 |
+
"ped_sepsis"
|
| 113 |
+
],
|
| 114 |
+
"control_groups": [
|
| 115 |
+
"adult_HC",
|
| 116 |
+
"adult_ICU_ctrl",
|
| 117 |
+
"ped_HC",
|
| 118 |
+
"ped_ICU_ctrl"
|
| 119 |
+
],
|
| 120 |
+
"n_case_donors": 57,
|
| 121 |
+
"n_control_donors": 20
|
| 122 |
+
},
|
| 123 |
+
"calls": {
|
| 124 |
+
"/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/scores/ye2026_sepsis/disease/draw0/score": {
|
| 125 |
+
"arms": [
|
| 126 |
+
"lora",
|
| 127 |
+
"pairedcal",
|
| 128 |
+
"scsemi",
|
| 129 |
+
"raw",
|
| 130 |
+
"refcal"
|
| 131 |
+
],
|
| 132 |
+
"summary_sha256": "841049689ef4839a90ab6c90cf5b456aadf875104ef82c62aea0bba548dcf742",
|
| 133 |
+
"contrast_csv_sha256": "a12cf00569fe17ef31e4dc87c286eff3bcba4af502264d16670d95fd23fd9dbd"
|
| 134 |
+
}
|
| 135 |
+
},
|
| 136 |
+
"notes": {
|
| 137 |
+
"source_tree": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores"
|
| 138 |
+
},
|
| 139 |
+
"reference_sha256": "bac12da8a241652cb75100a1b082b2be56806c9bf2fd20ce6f927f19683ea5b8",
|
| 140 |
+
"deg_reference": {
|
| 141 |
+
"source": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scoring_cache/ye2026_sepsis/deg_reference.npz",
|
| 142 |
+
"sha256": "9886ea64da90b1db6a07984d5d61d7dab04ee0beee7d4094ee3672316c2691d0"
|
| 143 |
+
},
|
| 144 |
+
"gene_exclusion": null,
|
| 145 |
+
"n_genes_disease_scores": 5975,
|
| 146 |
+
"genes_per_type": {
|
| 147 |
+
"T cell": 3259,
|
| 148 |
+
"B cell": 3304,
|
| 149 |
+
"Monocyte": 3285,
|
| 150 |
+
"NK cell": 3226
|
| 151 |
+
},
|
| 152 |
+
"arms": {
|
| 153 |
+
"lora": {
|
| 154 |
+
"call": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/scores/ye2026_sepsis/disease/draw0/score",
|
| 155 |
+
"npz": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/generated/ye2026_sepsis/disease/draw0/lora.npz",
|
| 156 |
+
"npz_read_from": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/generated/ye2026_sepsis/disease/draw0/lora.npz",
|
| 157 |
+
"npz_sha256": "823ee652c0cb8be8f822bd48bbdb4d4368b8aca5a075f423159acc3c66be8842",
|
| 158 |
+
"receipt_verified": true,
|
| 159 |
+
"condition": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/data/ye2026_sepsis/disease/draw0/test_raw.npz",
|
| 160 |
+
"condition_sha256": "ae163d5eb1531842e2acea7db21a0a500f7642767566cdc639be42951543bba9",
|
| 161 |
+
"condition_label": "test_raw.npz@ae163d5e",
|
| 162 |
+
"condition_read_from": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/data/ye2026_sepsis/disease/draw0/test_raw.npz",
|
| 163 |
+
"condition_key": "bcast:ae163d5eb1531842",
|
| 164 |
+
"n_generated_cells": 115500,
|
| 165 |
+
"label": "lora",
|
| 166 |
+
"seconds": 12.2
|
| 167 |
+
},
|
| 168 |
+
"pairedcal": {
|
| 169 |
+
"call": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/scores/ye2026_sepsis/disease/draw0/score",
|
| 170 |
+
"npz": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/generated/ye2026_sepsis/disease/draw0/pairedcal.npz",
|
| 171 |
+
"npz_read_from": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/generated/ye2026_sepsis/disease/draw0/pairedcal.npz",
|
| 172 |
+
"npz_sha256": "ee533342c8f2eb0518ead360fc788db7864238e3e48146c6a6e85953543308b0",
|
| 173 |
+
"receipt_verified": true,
|
| 174 |
+
"condition": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/data/ye2026_sepsis/disease/draw0/test_cal.npz",
|
| 175 |
+
"condition_sha256": "e60564d1fa5edb4cd0bfac405e6ce84aa4a810af06ee0a2d16187219f768baaa",
|
| 176 |
+
"condition_label": "test_cal.npz@e60564d1",
|
| 177 |
+
"condition_read_from": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/data/ye2026_sepsis/disease/draw0/test_cal.npz",
|
| 178 |
+
"condition_key": "bcast:e60564d1fa5edb4c",
|
| 179 |
+
"n_generated_cells": 115500,
|
| 180 |
+
"label": "pairedcal",
|
| 181 |
+
"seconds": 11.8
|
| 182 |
+
},
|
| 183 |
+
"scsemi": {
|
| 184 |
+
"call": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/scores/ye2026_sepsis/disease/draw0/score",
|
| 185 |
+
"npz": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/generated/ye2026_sepsis/disease/draw0/scsemi.npz",
|
| 186 |
+
"npz_read_from": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/generated/ye2026_sepsis/disease/draw0/scsemi.npz",
|
| 187 |
+
"npz_sha256": "80d99f5363d0fd7b967070fe1e8e716a05c86869edd31757c4e7cac5bf7ef29f",
|
| 188 |
+
"receipt_verified": true,
|
| 189 |
+
"condition": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/data/ye2026_sepsis/fewshot_n5/draw0/test_raw.npz",
|
| 190 |
+
"condition_sha256": "ae163d5eb1531842e2acea7db21a0a500f7642767566cdc639be42951543bba9",
|
| 191 |
+
"condition_label": "test_raw.npz@ae163d5e",
|
| 192 |
+
"condition_read_from": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/data/ye2026_sepsis/fewshot_n5/draw0/test_raw.npz",
|
| 193 |
+
"condition_key": "bcast:ae163d5eb1531842",
|
| 194 |
+
"n_generated_cells": 115500,
|
| 195 |
+
"label": "scsemi",
|
| 196 |
+
"seconds": 9.1
|
| 197 |
+
},
|
| 198 |
+
"raw": {
|
| 199 |
+
"call": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/scores/ye2026_sepsis/disease/draw0/score",
|
| 200 |
+
"npz": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/generated/global/ye2026_sepsis/raw.npz",
|
| 201 |
+
"npz_read_from": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/generated/global/ye2026_sepsis/raw.npz",
|
| 202 |
+
"npz_sha256": "665afa80f7749e56ee7a1c60d8452bff22a53e7bfcf87254c8e92d4d79c62b2a",
|
| 203 |
+
"receipt_verified": true,
|
| 204 |
+
"condition": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/data/external_refcal/ye2026_sepsis/conditions_raw.npz",
|
| 205 |
+
"condition_sha256": "36add186da47d10c067d7a1f0641fabf3ddba64d5e65168c5975e1e3a448c9cd",
|
| 206 |
+
"condition_label": "conditions_raw.npz@36add186",
|
| 207 |
+
"condition_read_from": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/data/external_refcal/ye2026_sepsis/conditions_raw.npz",
|
| 208 |
+
"condition_key": "bcast:36add186da47d10c",
|
| 209 |
+
"n_generated_cells": 115500,
|
| 210 |
+
"label": "raw",
|
| 211 |
+
"seconds": 13.8
|
| 212 |
+
},
|
| 213 |
+
"refcal": {
|
| 214 |
+
"call": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/scores/ye2026_sepsis/disease/draw0/score",
|
| 215 |
+
"npz": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/generated/global/ye2026_sepsis/refcal.npz",
|
| 216 |
+
"npz_read_from": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/generated/global/ye2026_sepsis/refcal.npz",
|
| 217 |
+
"npz_sha256": "64784052e0289e347e2799523b4aa4ab07b16ddba6a54353a6011d9e77852891",
|
| 218 |
+
"receipt_verified": true,
|
| 219 |
+
"condition": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/data/external_refcal/ye2026_sepsis/conditions_refcal.npz",
|
| 220 |
+
"condition_sha256": "3886924bfe4926914677850db7dac8a77a38bb0c0fc1a30ee663b2587eabc7dd",
|
| 221 |
+
"condition_label": "conditions_refcal.npz@3886924b",
|
| 222 |
+
"condition_read_from": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/data/external_refcal/ye2026_sepsis/conditions_refcal.npz",
|
| 223 |
+
"condition_key": "bcast:3886924bfe492691",
|
| 224 |
+
"n_generated_cells": 115500,
|
| 225 |
+
"label": "refcal",
|
| 226 |
+
"seconds": 12.2
|
| 227 |
+
}
|
| 228 |
+
},
|
| 229 |
+
"observed_cells": {
|
| 230 |
+
"inputs_sha256": {
|
| 231 |
+
"/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/data/ye2026_sepsis/cells_panel6k.npz": "c814b53d04ffdbe8e257f1fb35df80e7945479db95a924774522b9a967745280",
|
| 232 |
+
"/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/data/ye2026_sepsis/cells_obs.parquet": "f21b34faaa06d3ba71f2538ec7367836879d59a5c44a820ad8e6ad90bffd4eb7"
|
| 233 |
+
},
|
| 234 |
+
"labels_sha256": "ab27c027a75b7cd47ec8267d4b33bfe41e8cb6ab64190a3592db1cffa2a73ea7",
|
| 235 |
+
"n_cells_4types_scored": 525088
|
| 236 |
+
},
|
| 237 |
+
"params": {
|
| 238 |
+
"split_seeds": [
|
| 239 |
+
20260926,
|
| 240 |
+
20260927,
|
| 241 |
+
20260928,
|
| 242 |
+
20260929,
|
| 243 |
+
20260930
|
| 244 |
+
],
|
| 245 |
+
"split_rule": "per scored sample x contrast type: permutation from default_rng([seed, uint64 LE of sha256('<sample>|<type>')[:8]]) of its cells in canonical order; half A = first floor(n/2) positions, half B = the rest",
|
| 246 |
+
"cat_ks": [
|
| 247 |
+
10,
|
| 248 |
+
20,
|
| 249 |
+
50,
|
| 250 |
+
100,
|
| 251 |
+
200,
|
| 252 |
+
500
|
| 253 |
+
],
|
| 254 |
+
"rbo_p": 0.98,
|
| 255 |
+
"limma_filters": [
|
| 256 |
+
"nonzero",
|
| 257 |
+
"filterByExpr"
|
| 258 |
+
],
|
| 259 |
+
"primary_filter": "nonzero",
|
| 260 |
+
"fdr": 0.05,
|
| 261 |
+
"top_n": 50,
|
| 262 |
+
"min_detect_frac": 0.01,
|
| 263 |
+
"poisson_seed": 20260916,
|
| 264 |
+
"repro_tol": 1e-09
|
| 265 |
+
},
|
| 266 |
+
"limma": {
|
| 267 |
+
"rscript": "/home/sj_server_1/miniforge3/bin/Rscript",
|
| 268 |
+
"versions": [
|
| 269 |
+
"R version 4.5.2 (2025-10-31)",
|
| 270 |
+
"limma 3.66.0",
|
| 271 |
+
"edgeR 4.8.1"
|
| 272 |
+
],
|
| 273 |
+
"n_jobs": 68,
|
| 274 |
+
"n_not_ok": 0,
|
| 275 |
+
"seconds": 16.4,
|
| 276 |
+
"job_matrices": {
|
| 277 |
+
"obs|T cell": {
|
| 278 |
+
"key": "obs|T cell",
|
| 279 |
+
"n_samples": 77,
|
| 280 |
+
"n_case": 57,
|
| 281 |
+
"n_control": 20,
|
| 282 |
+
"n_zero_library_dropped": 0,
|
| 283 |
+
"defined": true
|
| 284 |
+
},
|
| 285 |
+
"obs|B cell": {
|
| 286 |
+
"key": "obs|B cell",
|
| 287 |
+
"n_samples": 77,
|
| 288 |
+
"n_case": 57,
|
| 289 |
+
"n_control": 20,
|
| 290 |
+
"n_zero_library_dropped": 0,
|
| 291 |
+
"defined": true
|
| 292 |
+
},
|
| 293 |
+
"obs|Monocyte": {
|
| 294 |
+
"key": "obs|Monocyte",
|
| 295 |
+
"n_samples": 77,
|
| 296 |
+
"n_case": 57,
|
| 297 |
+
"n_control": 20,
|
| 298 |
+
"n_zero_library_dropped": 0,
|
| 299 |
+
"defined": true
|
| 300 |
+
},
|
| 301 |
+
"obs|NK cell": {
|
| 302 |
+
"key": "obs|NK cell",
|
| 303 |
+
"n_samples": 77,
|
| 304 |
+
"n_case": 57,
|
| 305 |
+
"n_control": 20,
|
| 306 |
+
"n_zero_library_dropped": 0,
|
| 307 |
+
"defined": true
|
| 308 |
+
},
|
| 309 |
+
"obs|DC": {
|
| 310 |
+
"key": "obs|DC",
|
| 311 |
+
"n_samples": 74,
|
| 312 |
+
"n_case": 54,
|
| 313 |
+
"n_control": 20,
|
| 314 |
+
"n_zero_library_dropped": 0,
|
| 315 |
+
"defined": true
|
| 316 |
+
},
|
| 317 |
+
"gen:lora|T cell": {
|
| 318 |
+
"key": "gen:lora|T cell",
|
| 319 |
+
"n_samples": 77,
|
| 320 |
+
"n_case": 57,
|
| 321 |
+
"n_control": 20,
|
| 322 |
+
"n_zero_library_dropped": 0,
|
| 323 |
+
"defined": true
|
| 324 |
+
},
|
| 325 |
+
"gen:lora|B cell": {
|
| 326 |
+
"key": "gen:lora|B cell",
|
| 327 |
+
"n_samples": 77,
|
| 328 |
+
"n_case": 57,
|
| 329 |
+
"n_control": 20,
|
| 330 |
+
"n_zero_library_dropped": 0,
|
| 331 |
+
"defined": true
|
| 332 |
+
},
|
| 333 |
+
"gen:lora|Monocyte": {
|
| 334 |
+
"key": "gen:lora|Monocyte",
|
| 335 |
+
"n_samples": 73,
|
| 336 |
+
"n_case": 53,
|
| 337 |
+
"n_control": 20,
|
| 338 |
+
"n_zero_library_dropped": 0,
|
| 339 |
+
"defined": true
|
| 340 |
+
},
|
| 341 |
+
"gen:lora|NK cell": {
|
| 342 |
+
"key": "gen:lora|NK cell",
|
| 343 |
+
"n_samples": 77,
|
| 344 |
+
"n_case": 57,
|
| 345 |
+
"n_control": 20,
|
| 346 |
+
"n_zero_library_dropped": 0,
|
| 347 |
+
"defined": true
|
| 348 |
+
},
|
| 349 |
+
"gen:lora|DC": {
|
| 350 |
+
"key": "gen:lora|DC",
|
| 351 |
+
"n_samples": 50,
|
| 352 |
+
"n_case": 34,
|
| 353 |
+
"n_control": 16,
|
| 354 |
+
"n_zero_library_dropped": 0,
|
| 355 |
+
"defined": true
|
| 356 |
+
},
|
| 357 |
+
"bcast:ae163d5eb1531842": {
|
| 358 |
+
"key": "bcast:ae163d5eb1531842",
|
| 359 |
+
"n_samples": 77,
|
| 360 |
+
"n_case": 57,
|
| 361 |
+
"n_control": 20,
|
| 362 |
+
"n_zero_library_dropped": 0,
|
| 363 |
+
"defined": true
|
| 364 |
+
},
|
| 365 |
+
"gen:pairedcal|T cell": {
|
| 366 |
+
"key": "gen:pairedcal|T cell",
|
| 367 |
+
"n_samples": 77,
|
| 368 |
+
"n_case": 57,
|
| 369 |
+
"n_control": 20,
|
| 370 |
+
"n_zero_library_dropped": 0,
|
| 371 |
+
"defined": true
|
| 372 |
+
},
|
| 373 |
+
"gen:pairedcal|B cell": {
|
| 374 |
+
"key": "gen:pairedcal|B cell",
|
| 375 |
+
"n_samples": 77,
|
| 376 |
+
"n_case": 57,
|
| 377 |
+
"n_control": 20,
|
| 378 |
+
"n_zero_library_dropped": 0,
|
| 379 |
+
"defined": true
|
| 380 |
+
},
|
| 381 |
+
"gen:pairedcal|Monocyte": {
|
| 382 |
+
"key": "gen:pairedcal|Monocyte",
|
| 383 |
+
"n_samples": 76,
|
| 384 |
+
"n_case": 56,
|
| 385 |
+
"n_control": 20,
|
| 386 |
+
"n_zero_library_dropped": 0,
|
| 387 |
+
"defined": true
|
| 388 |
+
},
|
| 389 |
+
"gen:pairedcal|NK cell": {
|
| 390 |
+
"key": "gen:pairedcal|NK cell",
|
| 391 |
+
"n_samples": 77,
|
| 392 |
+
"n_case": 57,
|
| 393 |
+
"n_control": 20,
|
| 394 |
+
"n_zero_library_dropped": 0,
|
| 395 |
+
"defined": true
|
| 396 |
+
},
|
| 397 |
+
"gen:pairedcal|DC": {
|
| 398 |
+
"key": "gen:pairedcal|DC",
|
| 399 |
+
"n_samples": 75,
|
| 400 |
+
"n_case": 55,
|
| 401 |
+
"n_control": 20,
|
| 402 |
+
"n_zero_library_dropped": 0,
|
| 403 |
+
"defined": true
|
| 404 |
+
},
|
| 405 |
+
"bcast:e60564d1fa5edb4c": {
|
| 406 |
+
"key": "bcast:e60564d1fa5edb4c",
|
| 407 |
+
"n_samples": 77,
|
| 408 |
+
"n_case": 57,
|
| 409 |
+
"n_control": 20,
|
| 410 |
+
"n_zero_library_dropped": 0,
|
| 411 |
+
"defined": true
|
| 412 |
+
},
|
| 413 |
+
"gen:scsemi|T cell": {
|
| 414 |
+
"key": "gen:scsemi|T cell",
|
| 415 |
+
"n_samples": 77,
|
| 416 |
+
"n_case": 57,
|
| 417 |
+
"n_control": 20,
|
| 418 |
+
"n_zero_library_dropped": 0,
|
| 419 |
+
"defined": true
|
| 420 |
+
},
|
| 421 |
+
"gen:scsemi|B cell": {
|
| 422 |
+
"key": "gen:scsemi|B cell",
|
| 423 |
+
"n_samples": 71,
|
| 424 |
+
"n_case": 52,
|
| 425 |
+
"n_control": 19,
|
| 426 |
+
"n_zero_library_dropped": 0,
|
| 427 |
+
"defined": true
|
| 428 |
+
},
|
| 429 |
+
"gen:scsemi|Monocyte": {
|
| 430 |
+
"key": "gen:scsemi|Monocyte",
|
| 431 |
+
"n_samples": 66,
|
| 432 |
+
"n_case": 47,
|
| 433 |
+
"n_control": 19,
|
| 434 |
+
"n_zero_library_dropped": 0,
|
| 435 |
+
"defined": true
|
| 436 |
+
},
|
| 437 |
+
"gen:scsemi|NK cell": {
|
| 438 |
+
"key": "gen:scsemi|NK cell",
|
| 439 |
+
"n_samples": 57,
|
| 440 |
+
"n_case": 42,
|
| 441 |
+
"n_control": 15,
|
| 442 |
+
"n_zero_library_dropped": 0,
|
| 443 |
+
"defined": true
|
| 444 |
+
},
|
| 445 |
+
"gen:scsemi|DC": {
|
| 446 |
+
"key": "gen:scsemi|DC",
|
| 447 |
+
"n_samples": 68,
|
| 448 |
+
"n_case": 51,
|
| 449 |
+
"n_control": 17,
|
| 450 |
+
"n_zero_library_dropped": 0,
|
| 451 |
+
"defined": true
|
| 452 |
+
},
|
| 453 |
+
"gen:raw|T cell": {
|
| 454 |
+
"key": "gen:raw|T cell",
|
| 455 |
+
"n_samples": 77,
|
| 456 |
+
"n_case": 57,
|
| 457 |
+
"n_control": 20,
|
| 458 |
+
"n_zero_library_dropped": 0,
|
| 459 |
+
"defined": true
|
| 460 |
+
},
|
| 461 |
+
"gen:raw|B cell": {
|
| 462 |
+
"key": "gen:raw|B cell",
|
| 463 |
+
"n_samples": 77,
|
| 464 |
+
"n_case": 57,
|
| 465 |
+
"n_control": 20,
|
| 466 |
+
"n_zero_library_dropped": 0,
|
| 467 |
+
"defined": true
|
| 468 |
+
},
|
| 469 |
+
"gen:raw|Monocyte": {
|
| 470 |
+
"key": "gen:raw|Monocyte",
|
| 471 |
+
"n_samples": 77,
|
| 472 |
+
"n_case": 57,
|
| 473 |
+
"n_control": 20,
|
| 474 |
+
"n_zero_library_dropped": 0,
|
| 475 |
+
"defined": true
|
| 476 |
+
},
|
| 477 |
+
"gen:raw|NK cell": {
|
| 478 |
+
"key": "gen:raw|NK cell",
|
| 479 |
+
"n_samples": 77,
|
| 480 |
+
"n_case": 57,
|
| 481 |
+
"n_control": 20,
|
| 482 |
+
"n_zero_library_dropped": 0,
|
| 483 |
+
"defined": true
|
| 484 |
+
},
|
| 485 |
+
"gen:raw|DC": {
|
| 486 |
+
"key": "gen:raw|DC",
|
| 487 |
+
"n_samples": 77,
|
| 488 |
+
"n_case": 57,
|
| 489 |
+
"n_control": 20,
|
| 490 |
+
"n_zero_library_dropped": 0,
|
| 491 |
+
"defined": true
|
| 492 |
+
},
|
| 493 |
+
"bcast:36add186da47d10c": {
|
| 494 |
+
"key": "bcast:36add186da47d10c",
|
| 495 |
+
"n_samples": 77,
|
| 496 |
+
"n_case": 57,
|
| 497 |
+
"n_control": 20,
|
| 498 |
+
"n_zero_library_dropped": 0,
|
| 499 |
+
"defined": true
|
| 500 |
+
},
|
| 501 |
+
"gen:refcal|T cell": {
|
| 502 |
+
"key": "gen:refcal|T cell",
|
| 503 |
+
"n_samples": 77,
|
| 504 |
+
"n_case": 57,
|
| 505 |
+
"n_control": 20,
|
| 506 |
+
"n_zero_library_dropped": 0,
|
| 507 |
+
"defined": true
|
| 508 |
+
},
|
| 509 |
+
"gen:refcal|B cell": {
|
| 510 |
+
"key": "gen:refcal|B cell",
|
| 511 |
+
"n_samples": 77,
|
| 512 |
+
"n_case": 57,
|
| 513 |
+
"n_control": 20,
|
| 514 |
+
"n_zero_library_dropped": 0,
|
| 515 |
+
"defined": true
|
| 516 |
+
},
|
| 517 |
+
"gen:refcal|Monocyte": {
|
| 518 |
+
"key": "gen:refcal|Monocyte",
|
| 519 |
+
"n_samples": 77,
|
| 520 |
+
"n_case": 57,
|
| 521 |
+
"n_control": 20,
|
| 522 |
+
"n_zero_library_dropped": 0,
|
| 523 |
+
"defined": true
|
| 524 |
+
},
|
| 525 |
+
"gen:refcal|NK cell": {
|
| 526 |
+
"key": "gen:refcal|NK cell",
|
| 527 |
+
"n_samples": 77,
|
| 528 |
+
"n_case": 57,
|
| 529 |
+
"n_control": 20,
|
| 530 |
+
"n_zero_library_dropped": 0,
|
| 531 |
+
"defined": true
|
| 532 |
+
},
|
| 533 |
+
"gen:refcal|DC": {
|
| 534 |
+
"key": "gen:refcal|DC",
|
| 535 |
+
"n_samples": 77,
|
| 536 |
+
"n_case": 57,
|
| 537 |
+
"n_control": 20,
|
| 538 |
+
"n_zero_library_dropped": 0,
|
| 539 |
+
"defined": true
|
| 540 |
+
},
|
| 541 |
+
"bcast:3886924bfe492691": {
|
| 542 |
+
"key": "bcast:3886924bfe492691",
|
| 543 |
+
"n_samples": 77,
|
| 544 |
+
"n_case": 57,
|
| 545 |
+
"n_control": 20,
|
| 546 |
+
"n_zero_library_dropped": 0,
|
| 547 |
+
"defined": true
|
| 548 |
+
}
|
| 549 |
+
}
|
| 550 |
+
},
|
| 551 |
+
"repro_all_pass": true,
|
| 552 |
+
"split_half_seconds": 11.0,
|
| 553 |
+
"fetched_from_server2": [],
|
| 554 |
+
"code_sha256": {
|
| 555 |
+
"/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/tools/contrast_extra.py": "b1ae7ded945177e61c1b2971c419c3adf5f9eb5e8868d427d1ba9d0f15fbf482",
|
| 556 |
+
"/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/tools/contrast_extra_limma.R": "f0685f68ddfc00c01fc842073950981c176d980194de2aa70e324f197989f7dc",
|
| 557 |
+
"/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/tools/ft_common.py": "4a6366b0f22208cd58714fc0261b8840c643b9d4569704d560cfd93534cbc747",
|
| 558 |
+
"/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/tools/score_ft.py": "ec5f40b4cea6d5062d0138f3b934abb6465e34cbfeac869c8a0906924c033aec",
|
| 559 |
+
"/home/sj_server_1/PBISC/immun-pbmc-fm/bulk2sc-paper/scripts/evaluate_generated_vs_truth.py": "48b12d794782b840838853e93e0fc55fab00532c4b3698f4588e926b985d2881"
|
| 560 |
+
},
|
| 561 |
+
"seconds": 87.0
|
| 562 |
+
}
|