junidude14 commited on
Commit
4f12114
·
verified ·
1 Parent(s): f4a33cb

Archive 4 checkpoints (1-4)

Browse files
paper-releases/pbisc-diffusion/updates/20261012T130738Z-strictpairs-implementation/diffusion/dataset/server_1/model8/plans/paper_figures_strictpairs_20261012/archive/20261012T130738Z-strictpairs-implementation/snapshot/backups/preflight_rejected_v1/protocol/splits/giroux2022/disease/draw3/support.json ADDED
@@ -0,0 +1,187 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ {
2
+ "schema": "pbisc.paper.strict-support.v1",
3
+ "cohort": "giroux2022",
4
+ "design": "disease_existing_draw",
5
+ "unit": "draw3_n5",
6
+ "n_pairs": 5,
7
+ "train_sample_ids": [
8
+ "450905_d0",
9
+ "BAAF62_d0",
10
+ "7085CA_d0",
11
+ "180E1A_d0",
12
+ "B85D75_d0"
13
+ ],
14
+ "train_donor_ids": [
15
+ "450905",
16
+ "BAAF62",
17
+ "7085CA",
18
+ "180E1A",
19
+ "B85D75"
20
+ ],
21
+ "test_sample_ids": [
22
+ "0B943B_d0",
23
+ "0B943B_d14",
24
+ "2AD75E_d0",
25
+ "2AD75E_d7",
26
+ "2AD75E_d14",
27
+ "82CCF5_d0",
28
+ "82CCF5_d7",
29
+ "82CCF5_d14",
30
+ "0BF51C_d0",
31
+ "0BF51C_d7",
32
+ "0BF51C_d14"
33
+ ],
34
+ "test_donor_ids": [
35
+ "0B943B",
36
+ "0B943B",
37
+ "2AD75E",
38
+ "2AD75E",
39
+ "2AD75E",
40
+ "82CCF5",
41
+ "82CCF5",
42
+ "82CCF5",
43
+ "0BF51C",
44
+ "0BF51C",
45
+ "0BF51C"
46
+ ],
47
+ "excluded_sample_ids": [
48
+ "180E1A_d14",
49
+ "180E1A_d7",
50
+ "450905_d14",
51
+ "7085CA_d14",
52
+ "7085CA_d7",
53
+ "B85D75_d7",
54
+ "BAAF62_d14",
55
+ "BAAF62_d7"
56
+ ],
57
+ "seed": null,
58
+ "selection_audit": [
59
+ {
60
+ "donor_id": "450905",
61
+ "assigned_stratum": false,
62
+ "selected_sample_id": "450905_d0",
63
+ "candidates": [
64
+ {
65
+ "sample_id": "450905_d0",
66
+ "time_value": 0.0,
67
+ "time_raw": "0",
68
+ "time_field": "timepoint",
69
+ "group": "mild"
70
+ },
71
+ {
72
+ "sample_id": "450905_d14",
73
+ "time_value": 14.0,
74
+ "time_raw": "14",
75
+ "time_field": "timepoint",
76
+ "group": "mild"
77
+ }
78
+ ]
79
+ },
80
+ {
81
+ "donor_id": "BAAF62",
82
+ "assigned_stratum": false,
83
+ "selected_sample_id": "BAAF62_d0",
84
+ "candidates": [
85
+ {
86
+ "sample_id": "BAAF62_d0",
87
+ "time_value": 0.0,
88
+ "time_raw": "0",
89
+ "time_field": "timepoint",
90
+ "group": "mild"
91
+ },
92
+ {
93
+ "sample_id": "BAAF62_d7",
94
+ "time_value": 7.0,
95
+ "time_raw": "7",
96
+ "time_field": "timepoint",
97
+ "group": "mild"
98
+ },
99
+ {
100
+ "sample_id": "BAAF62_d14",
101
+ "time_value": 14.0,
102
+ "time_raw": "14",
103
+ "time_field": "timepoint",
104
+ "group": "mild"
105
+ }
106
+ ]
107
+ },
108
+ {
109
+ "donor_id": "7085CA",
110
+ "assigned_stratum": false,
111
+ "selected_sample_id": "7085CA_d0",
112
+ "candidates": [
113
+ {
114
+ "sample_id": "7085CA_d0",
115
+ "time_value": 0.0,
116
+ "time_raw": "0",
117
+ "time_field": "timepoint",
118
+ "group": "mild"
119
+ },
120
+ {
121
+ "sample_id": "7085CA_d7",
122
+ "time_value": 7.0,
123
+ "time_raw": "7",
124
+ "time_field": "timepoint",
125
+ "group": "mild"
126
+ },
127
+ {
128
+ "sample_id": "7085CA_d14",
129
+ "time_value": 14.0,
130
+ "time_raw": "14",
131
+ "time_field": "timepoint",
132
+ "group": "mild"
133
+ }
134
+ ]
135
+ },
136
+ {
137
+ "donor_id": "180E1A",
138
+ "assigned_stratum": true,
139
+ "selected_sample_id": "180E1A_d0",
140
+ "candidates": [
141
+ {
142
+ "sample_id": "180E1A_d0",
143
+ "time_value": 0.0,
144
+ "time_raw": "0",
145
+ "time_field": "timepoint",
146
+ "group": "severe"
147
+ },
148
+ {
149
+ "sample_id": "180E1A_d7",
150
+ "time_value": 7.0,
151
+ "time_raw": "7",
152
+ "time_field": "timepoint",
153
+ "group": "severe"
154
+ },
155
+ {
156
+ "sample_id": "180E1A_d14",
157
+ "time_value": 14.0,
158
+ "time_raw": "14",
159
+ "time_field": "timepoint",
160
+ "group": "severe"
161
+ }
162
+ ]
163
+ },
164
+ {
165
+ "donor_id": "B85D75",
166
+ "assigned_stratum": true,
167
+ "selected_sample_id": "B85D75_d0",
168
+ "candidates": [
169
+ {
170
+ "sample_id": "B85D75_d0",
171
+ "time_value": 0.0,
172
+ "time_raw": "0",
173
+ "time_field": "timepoint",
174
+ "group": "severe"
175
+ },
176
+ {
177
+ "sample_id": "B85D75_d7",
178
+ "time_value": 7.0,
179
+ "time_raw": "7",
180
+ "time_field": "timepoint",
181
+ "group": "severe"
182
+ }
183
+ ]
184
+ }
185
+ ],
186
+ "sha256": "6e7e31e9963228d5a291268fad234c49a14e285b7afa181e57d8d66d80195a15"
187
+ }
paper-releases/pbisc-diffusion/updates/20261012T130738Z-strictpairs-implementation/diffusion/dataset/server_1/model8/plans/paper_figures_strictpairs_20261012/archive/20261012T130738Z-strictpairs-implementation/snapshot/backups/preflight_rejected_v1/protocol/splits/giroux2022/disease/draw4/support.json ADDED
@@ -0,0 +1,193 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ {
2
+ "schema": "pbisc.paper.strict-support.v1",
3
+ "cohort": "giroux2022",
4
+ "design": "disease_existing_draw",
5
+ "unit": "draw4_n5",
6
+ "n_pairs": 5,
7
+ "train_sample_ids": [
8
+ "BAAF62_d0",
9
+ "0B943B_d0",
10
+ "2AD75E_d0",
11
+ "82CCF5_d0",
12
+ "0BF51C_d0"
13
+ ],
14
+ "train_donor_ids": [
15
+ "BAAF62",
16
+ "0B943B",
17
+ "2AD75E",
18
+ "82CCF5",
19
+ "0BF51C"
20
+ ],
21
+ "test_sample_ids": [
22
+ "450905_d0",
23
+ "450905_d14",
24
+ "7085CA_d0",
25
+ "7085CA_d7",
26
+ "7085CA_d14",
27
+ "B85D75_d0",
28
+ "B85D75_d7",
29
+ "180E1A_d0",
30
+ "180E1A_d7",
31
+ "180E1A_d14"
32
+ ],
33
+ "test_donor_ids": [
34
+ "450905",
35
+ "450905",
36
+ "7085CA",
37
+ "7085CA",
38
+ "7085CA",
39
+ "B85D75",
40
+ "B85D75",
41
+ "180E1A",
42
+ "180E1A",
43
+ "180E1A"
44
+ ],
45
+ "excluded_sample_ids": [
46
+ "0B943B_d14",
47
+ "0BF51C_d14",
48
+ "0BF51C_d7",
49
+ "2AD75E_d14",
50
+ "2AD75E_d7",
51
+ "82CCF5_d14",
52
+ "82CCF5_d7",
53
+ "BAAF62_d14",
54
+ "BAAF62_d7"
55
+ ],
56
+ "seed": null,
57
+ "selection_audit": [
58
+ {
59
+ "donor_id": "BAAF62",
60
+ "assigned_stratum": false,
61
+ "selected_sample_id": "BAAF62_d0",
62
+ "candidates": [
63
+ {
64
+ "sample_id": "BAAF62_d0",
65
+ "time_value": 0.0,
66
+ "time_raw": "0",
67
+ "time_field": "timepoint",
68
+ "group": "mild"
69
+ },
70
+ {
71
+ "sample_id": "BAAF62_d7",
72
+ "time_value": 7.0,
73
+ "time_raw": "7",
74
+ "time_field": "timepoint",
75
+ "group": "mild"
76
+ },
77
+ {
78
+ "sample_id": "BAAF62_d14",
79
+ "time_value": 14.0,
80
+ "time_raw": "14",
81
+ "time_field": "timepoint",
82
+ "group": "mild"
83
+ }
84
+ ]
85
+ },
86
+ {
87
+ "donor_id": "0B943B",
88
+ "assigned_stratum": false,
89
+ "selected_sample_id": "0B943B_d0",
90
+ "candidates": [
91
+ {
92
+ "sample_id": "0B943B_d0",
93
+ "time_value": 0.0,
94
+ "time_raw": "0",
95
+ "time_field": "timepoint",
96
+ "group": "mild"
97
+ },
98
+ {
99
+ "sample_id": "0B943B_d14",
100
+ "time_value": 14.0,
101
+ "time_raw": "14",
102
+ "time_field": "timepoint",
103
+ "group": "mild"
104
+ }
105
+ ]
106
+ },
107
+ {
108
+ "donor_id": "2AD75E",
109
+ "assigned_stratum": false,
110
+ "selected_sample_id": "2AD75E_d0",
111
+ "candidates": [
112
+ {
113
+ "sample_id": "2AD75E_d0",
114
+ "time_value": 0.0,
115
+ "time_raw": "0",
116
+ "time_field": "timepoint",
117
+ "group": "mild"
118
+ },
119
+ {
120
+ "sample_id": "2AD75E_d7",
121
+ "time_value": 7.0,
122
+ "time_raw": "7",
123
+ "time_field": "timepoint",
124
+ "group": "mild"
125
+ },
126
+ {
127
+ "sample_id": "2AD75E_d14",
128
+ "time_value": 14.0,
129
+ "time_raw": "14",
130
+ "time_field": "timepoint",
131
+ "group": "mild"
132
+ }
133
+ ]
134
+ },
135
+ {
136
+ "donor_id": "82CCF5",
137
+ "assigned_stratum": true,
138
+ "selected_sample_id": "82CCF5_d0",
139
+ "candidates": [
140
+ {
141
+ "sample_id": "82CCF5_d0",
142
+ "time_value": 0.0,
143
+ "time_raw": "0",
144
+ "time_field": "timepoint",
145
+ "group": "severe"
146
+ },
147
+ {
148
+ "sample_id": "82CCF5_d7",
149
+ "time_value": 7.0,
150
+ "time_raw": "7",
151
+ "time_field": "timepoint",
152
+ "group": "severe"
153
+ },
154
+ {
155
+ "sample_id": "82CCF5_d14",
156
+ "time_value": 14.0,
157
+ "time_raw": "14",
158
+ "time_field": "timepoint",
159
+ "group": "severe"
160
+ }
161
+ ]
162
+ },
163
+ {
164
+ "donor_id": "0BF51C",
165
+ "assigned_stratum": true,
166
+ "selected_sample_id": "0BF51C_d0",
167
+ "candidates": [
168
+ {
169
+ "sample_id": "0BF51C_d0",
170
+ "time_value": 0.0,
171
+ "time_raw": "0",
172
+ "time_field": "timepoint",
173
+ "group": "severe"
174
+ },
175
+ {
176
+ "sample_id": "0BF51C_d7",
177
+ "time_value": 7.0,
178
+ "time_raw": "7",
179
+ "time_field": "timepoint",
180
+ "group": "severe"
181
+ },
182
+ {
183
+ "sample_id": "0BF51C_d14",
184
+ "time_value": 14.0,
185
+ "time_raw": "14",
186
+ "time_field": "timepoint",
187
+ "group": "severe"
188
+ }
189
+ ]
190
+ }
191
+ ],
192
+ "sha256": "df74fb20effc23b7784248bf76e32951803075e492251168f3d5f83dfdec81ea"
193
+ }
paper-releases/pbisc-diffusion/updates/20261012T130738Z-strictpairs-implementation/diffusion/dataset/server_1/model8/plans/paper_figures_strictpairs_20261012/archive/20261012T130738Z-strictpairs-implementation/snapshot/backups/preflight_rejected_v1/protocol/splits/immicro/healthy/fold0/n10/support.json ADDED
@@ -0,0 +1,83 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ {
2
+ "schema": "pbisc.paper.strict-support.v1",
3
+ "cohort": "immicro",
4
+ "design": "healthy_outerfold",
5
+ "unit": "fold0_n10",
6
+ "n_pairs": 10,
7
+ "train_sample_ids": [
8
+ "HS40",
9
+ "HS30",
10
+ "HS53",
11
+ "HS39",
12
+ "HS109",
13
+ "HS89",
14
+ "HS78",
15
+ "HS96",
16
+ "HS92",
17
+ "HS100"
18
+ ],
19
+ "train_donor_ids": [
20
+ "HS40",
21
+ "HS30",
22
+ "HS53",
23
+ "HS39",
24
+ "HS109",
25
+ "HS89",
26
+ "HS78",
27
+ "HS96",
28
+ "HS92",
29
+ "HS100"
30
+ ],
31
+ "test_sample_ids": [
32
+ "HS3",
33
+ "HS6",
34
+ "HS7",
35
+ "HS13",
36
+ "HS18",
37
+ "HS31",
38
+ "HS34",
39
+ "HS37",
40
+ "HS38",
41
+ "HS52",
42
+ "HS58",
43
+ "HS60",
44
+ "HS66",
45
+ "HS81",
46
+ "HS82",
47
+ "HS83",
48
+ "HS85",
49
+ "HS86",
50
+ "HS95",
51
+ "HS98",
52
+ "HS101",
53
+ "HS107"
54
+ ],
55
+ "test_donor_ids": [
56
+ "HS3",
57
+ "HS6",
58
+ "HS7",
59
+ "HS13",
60
+ "HS18",
61
+ "HS31",
62
+ "HS34",
63
+ "HS37",
64
+ "HS38",
65
+ "HS52",
66
+ "HS58",
67
+ "HS60",
68
+ "HS66",
69
+ "HS81",
70
+ "HS82",
71
+ "HS83",
72
+ "HS85",
73
+ "HS86",
74
+ "HS95",
75
+ "HS98",
76
+ "HS101",
77
+ "HS107"
78
+ ],
79
+ "excluded_sample_ids": [],
80
+ "seed": 20261012,
81
+ "selection_audit": [],
82
+ "sha256": "b76459a585604c60e588279b889094c972e621e2aa6c28ecf5aa163ffe5481bf"
83
+ }
paper-releases/pbisc-diffusion/updates/20261012T130738Z-strictpairs-implementation/diffusion/dataset/server_1/model8/plans/paper_figures_strictpairs_20261012/archive/20261012T130738Z-strictpairs-implementation/snapshot/backups/preflight_rejected_v1/protocol/splits/immicro/healthy/fold0/n20/support.json ADDED
@@ -0,0 +1,103 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ {
2
+ "schema": "pbisc.paper.strict-support.v1",
3
+ "cohort": "immicro",
4
+ "design": "healthy_outerfold",
5
+ "unit": "fold0_n20",
6
+ "n_pairs": 20,
7
+ "train_sample_ids": [
8
+ "HS40",
9
+ "HS30",
10
+ "HS53",
11
+ "HS39",
12
+ "HS109",
13
+ "HS89",
14
+ "HS78",
15
+ "HS96",
16
+ "HS92",
17
+ "HS100",
18
+ "HS35",
19
+ "HS55",
20
+ "HS50",
21
+ "HS63",
22
+ "HS57",
23
+ "HS62",
24
+ "HS105",
25
+ "HS67",
26
+ "HS1",
27
+ "HS41"
28
+ ],
29
+ "train_donor_ids": [
30
+ "HS40",
31
+ "HS30",
32
+ "HS53",
33
+ "HS39",
34
+ "HS109",
35
+ "HS89",
36
+ "HS78",
37
+ "HS96",
38
+ "HS92",
39
+ "HS100",
40
+ "HS35",
41
+ "HS55",
42
+ "HS50",
43
+ "HS63",
44
+ "HS57",
45
+ "HS62",
46
+ "HS105",
47
+ "HS67",
48
+ "HS1",
49
+ "HS41"
50
+ ],
51
+ "test_sample_ids": [
52
+ "HS3",
53
+ "HS6",
54
+ "HS7",
55
+ "HS13",
56
+ "HS18",
57
+ "HS31",
58
+ "HS34",
59
+ "HS37",
60
+ "HS38",
61
+ "HS52",
62
+ "HS58",
63
+ "HS60",
64
+ "HS66",
65
+ "HS81",
66
+ "HS82",
67
+ "HS83",
68
+ "HS85",
69
+ "HS86",
70
+ "HS95",
71
+ "HS98",
72
+ "HS101",
73
+ "HS107"
74
+ ],
75
+ "test_donor_ids": [
76
+ "HS3",
77
+ "HS6",
78
+ "HS7",
79
+ "HS13",
80
+ "HS18",
81
+ "HS31",
82
+ "HS34",
83
+ "HS37",
84
+ "HS38",
85
+ "HS52",
86
+ "HS58",
87
+ "HS60",
88
+ "HS66",
89
+ "HS81",
90
+ "HS82",
91
+ "HS83",
92
+ "HS85",
93
+ "HS86",
94
+ "HS95",
95
+ "HS98",
96
+ "HS101",
97
+ "HS107"
98
+ ],
99
+ "excluded_sample_ids": [],
100
+ "seed": 20261012,
101
+ "selection_audit": [],
102
+ "sha256": "52b20ff9322e8bf850bd0092fb61a1ad1bdbf6304ddd2b7b654ef90fe8009e7e"
103
+ }