Archive 4 checkpoints (1-4)
Browse files- paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/scsemi_budget_20261002/fold0/per_donor.csv +69 -0
- paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/scsemi_budget_20261002/fold0/summary.json +1360 -0
- paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/scsemi_budget_20261002/fold1/arms/scsemi_n10__raw/deg_top50_lists.csv +51 -0
- paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/scsemi_budget_20261002/fold1/arms/scsemi_n10__raw/generated_cells.parquet +3 -0
paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/scsemi_budget_20261002/fold0/per_donor.csv
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| 1 |
+
arm,donor,group,n_generated_cells,n_observed_cells,n_reference_cells,gen_T cell,obs_T cell,gen_B cell,obs_B cell,gen_Monocyte,obs_Monocyte,gen_NK cell,obs_NK cell,gen_DC,obs_DC,gen_Other,obs_Other,comp_l1,comp_l1_obs_loo_null,pb_r,pb_own_rank,pb_top1,precision,coverage,precision_depth_matched,coverage_depth_matched,mono_pct_gen,mono_pct_obs,median_umi_gen,median_umi_obs
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| 2 |
+
scsemi_n5__raw,Abd-PS19,ped_sepsis,1500,7984,150,0.37866666666666665,0.4622995991983968,0.102,0.11209919839679358,0.4573333333333333,0.2937124248496994,0.010666666666666666,0.05586172344689379,0.010666666666666666,0.0156563126252505,0.04066666666666666,0.06037074148296593,0.32724181696726784,0.17976211899936204,0.5903351730935619,5,False,0.9866666666666667,0.10666666666666667,0.6066666666666667,0.23333333333333334,45.733333333333334,29.37124248496994,2282.0,2111.0
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| 3 |
+
scsemi_n5__raw,Abd-PS23,ped_sepsis,1500,4309,150,0.6473333333333333,0.2529589231840334,0.07866666666666666,0.3272220932931075,0.04933333333333333,0.32142028312833604,0.01,0.013460199582269667,0.005333333333333333,0.002088651659317707,0.20933333333333334,0.08284984915293572,1.0482051520074263,0.5708838013443897,0.5499278330667601,4,False,0.96,0.12,0.7933333333333333,0.16666666666666666,4.933333333333334,32.1420283128336,2281.5,1832.0
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| 4 |
+
scsemi_n5__raw,Abd-S123,adult_sepsis,1500,6299,150,0.12733333333333333,0.16986823305286552,0.010666666666666666,0.08779171297031275,0.29733333333333334,0.5027782187648833,0.03666666666666667,0.10938244165740593,0.06533333333333333,0.0007937767899666614,0.46266666666666667,0.1293856167645658,0.795641212890935,0.7650207172461033,0.6189539873455978,2,False,1.0,0.23333333333333334,0.6066666666666667,0.4533333333333333,29.733333333333334,50.277821876488325,2283.0,2261.0
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| 5 |
+
scsemi_n5__raw,Abd-S39,adult_sepsis,1500,4291,150,0.6233333333333333,0.13819622465625728,0.07133333333333333,0.06152412025168958,0.08933333333333333,0.6933115823817292,0.017333333333333333,0.049638778839431366,0.004,0.0013982754602656724,0.19466666666666665,0.05593101841062689,1.2725673891089877,0.9633289157537908,0.6726964118978136,3,False,0.9266666666666666,0.12,0.6933333333333334,0.28,8.933333333333334,69.33115823817292,2282.0,3523.0
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| 6 |
+
scsemi_n5__raw,Abd-S47,adult_sepsis,1500,7971,150,0.808,0.7027976414502571,0.14666666666666667,0.20474219044034625,0.022,0.03224187680341237,0.007333333333333333,0.019069125580228326,0.011333333333333334,0.0006272738677706687,0.004666666666666667,0.040521891857985194,0.23181683603061107,0.6288356545294588,0.6430102000611643,1,True,0.82,0.12,0.8666666666666667,0.31333333333333335,2.1999999999999997,3.224187680341237,2282.0,2030.0
|
| 7 |
+
scsemi_n5__raw,Abd-S66,adult_sepsis,1500,7946,150,0.37066666666666664,0.49295242889504154,0.09733333333333333,0.23873647118046817,0.458,0.03788069468915178,0.042,0.18688648376541656,0.002,0.0003775484520513466,0.03,0.04316637301787063,0.8434835137175937,0.47033269157789737,0.6142455822116729,16,False,0.9466666666666667,0.06666666666666667,0.47333333333333333,0.23333333333333334,45.800000000000004,3.7880694689151775,2282.0,1821.0
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| 8 |
+
scsemi_n5__raw,HC01,adult_HC,1500,10173,150,0.6293333333333333,0.5901897178806645,0.12333333333333334,0.09938071365378945,0.16333333333333333,0.1862774009633343,0.051333333333333335,0.06772830040302762,0.012666666666666666,0.028408532389658903,0.02,0.028015334709525212,0.12619247026442534,0.3550119706716009,0.5619258230678856,11,False,0.96,0.09333333333333334,0.7066666666666667,0.26,16.333333333333332,18.62774009633343,2282.0,2276.0
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| 9 |
+
scsemi_n5__raw,HC07,adult_HC,1500,9812,150,0.5886666666666667,0.3848348960456584,0.064,0.03770892784345699,0.128,0.21962902568283735,0.194,0.3080921320831635,0.017333333333333333,0.019262128006522626,0.008,0.03047289033836119,0.4602456855551026,0.4991259018586224,0.5944366974525224,9,False,0.8733333333333333,0.1,0.43333333333333335,0.23333333333333334,12.8,21.962902568283734,2284.0,2035.0
|
| 10 |
+
scsemi_n5__raw,IC23,adult_ICU_ctrl,1500,13774,150,0.4093333333333333,0.42819805430521274,0.08066666666666666,0.11986351096268331,0.436,0.3843473210396399,0.02666666666666667,0.024466385944533178,0.02666666666666667,0.007840859590532889,0.020666666666666667,0.03528386815739799,0.14535753351725472,0.2960984586998728,0.5657353588213571,8,False,0.9866666666666667,0.14666666666666667,0.7666666666666667,0.37333333333333335,43.6,38.434732103963995,2281.0,1894.0
|
| 11 |
+
scsemi_n5__raw,PHC03,ped_HC,1500,9638,150,0.7686666666666667,0.6757626063498651,0.168,0.17804523760116206,0.025333333333333333,0.055613197758871136,0.027333333333333334,0.07273293214359826,0.004666666666666667,0.011516912222452791,0.006,0.006329113924050633,0.1858081206336032,0.5245802286446084,0.6069214585897733,7,False,0.86,0.03333333333333333,0.7266666666666667,0.11333333333333333,2.533333333333333,5.561319775887114,2283.5,1660.5
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| 12 |
+
scsemi_n5__raw,PIC04,ped_ICU_ctrl,1500,11535,150,0.42866666666666664,0.36341569137407886,0.07133333333333333,0.08253142609449501,0.43466666666666665,0.4273948851322063,0.018666666666666668,0.03233636757693975,0.006666666666666667,0.006501950585175552,0.04,0.08781967923710446,0.14537494581707847,0.46601933835481935,0.52837820699158,12,False,0.9733333333333334,0.36666666666666664,0.9466666666666667,0.24666666666666667,43.46666666666666,42.73948851322063,2281.5,1144.0
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| 13 |
+
scsemi_n5__raw,Res-PS25,ped_sepsis,1500,6203,150,0.7613333333333333,0.3562792197323876,0.172,0.42447202966306624,0.032,0.18458810253103336,0.009333333333333334,0.0095115266806384,0.008666666666666666,0.005642431081734645,0.016666666666666666,0.01950669031113977,0.8161566983717556,0.5472774959628155,0.6130134586665418,4,False,0.9066666666666666,0.08666666666666667,0.7133333333333334,0.38666666666666666,3.2,18.458810253103337,2281.0,2342.0
|
| 14 |
+
scsemi_n5__raw,Res-S139,adult_sepsis,1500,2657,150,0.31666666666666665,0.3522770041400075,0.10466666666666667,0.06925103500188182,0.47,0.26345502446368085,0.07066666666666667,0.29055325555137373,0.004666666666666667,0.00978547233722243,0.03333333333333333,0.014678208505833647,0.5212314640572073,0.4788067877633468,0.6332709333244696,12,False,0.98,0.11333333333333333,0.68,0.14,47.0,26.345502446368087,2282.0,1637.0
|
| 15 |
+
scsemi_n5__raw,Res-S26,adult_sepsis,1500,6036,150,0.5933333333333334,0.6973161033797217,0.06533333333333333,0.145791915175613,0.22133333333333333,0.023028495692511596,0.08,0.11911862160371106,0.014,0.0001656726308813784,0.026,0.0145791915175613,0.4471199469847581,0.608009358576924,0.56657354981587,9,False,0.96,0.05333333333333334,0.6666666666666666,0.16666666666666666,22.133333333333333,2.3028495692511597,2278.0,3953.0
|
| 16 |
+
scsemi_n5__raw,Res-S77,adult_sepsis,1500,7804,150,0.36533333333333334,0.685033316248078,0.09733333333333333,0.20861096873398258,0.46066666666666667,0.04651460789338801,0.037333333333333336,0.023193234238851872,0.004,0.0012813941568426447,0.035333333333333335,0.035366478728856995,0.8620215274218349,0.5993076173488051,0.6586258073007379,11,False,0.9266666666666666,0.06666666666666667,0.6733333333333333,0.38,46.06666666666667,4.651460789338801,2281.0,2095.0
|
| 17 |
+
scsemi_n5__raw,Skin-S140,adult_sepsis,1500,7668,150,0.25466666666666665,0.2646061554512259,0.01,0.23735002608242045,0.4186666666666667,0.3272039645279082,0.007333333333333333,0.042383933229003655,0.019333333333333334,0.0003912363067292645,0.29,0.12806468440271257,0.5446802295252999,0.48827750640154627,0.5987628455028509,1,True,0.9933333333333333,0.1,0.7533333333333333,0.2,41.86666666666667,32.720396452790816,2282.0,2069.5
|
| 18 |
+
scsemi_n5__raw,Uri-S147,adult_sepsis,1500,7529,150,0.716,0.5427015539912339,0.08466666666666667,0.20268295922433258,0.13266666666666665,0.18262717492362865,0.0,0.031212644441492896,0.030666666666666665,0.004648691725328729,0.036,0.036126975693983265,0.3986328419002081,0.28425560234500524,0.49975534037873737,2,False,1.0,0.07333333333333333,0.8933333333333333,0.14666666666666667,13.266666666666666,18.262717492362864,2281.0,2024.0
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| 19 |
+
scsemi_n10__raw,Abd-PS19,ped_sepsis,1500,7984,150,0.7193333333333334,0.4622995991983968,0.116,0.11209919839679358,0.058,0.2937124248496994,0.1,0.05586172344689379,0.0026666666666666666,0.0156563126252505,0.004,0.06037074148296593,0.6101456245824984,0.17976211899936204,0.5818309387256756,5,False,0.9,0.12666666666666668,0.6866666666666666,0.24666666666666667,5.800000000000001,29.37124248496994,2063.0,2111.0
|
| 20 |
+
scsemi_n10__raw,Abd-PS23,ped_sepsis,1500,4309,150,0.6666666666666666,0.2529589231840334,0.07866666666666666,0.3272220932931075,0.05,0.32142028312833604,0.009333333333333334,0.013460199582269667,0.004666666666666667,0.002088651659317707,0.19066666666666668,0.08284984915293572,1.0482051520074265,0.5708838013443897,0.5494842772299109,4,False,0.9466666666666667,0.12,0.78,0.20666666666666667,5.0,32.1420283128336,2062.0,1832.0
|
| 21 |
+
scsemi_n10__raw,Abd-S123,adult_sepsis,1500,6299,150,0.12933333333333333,0.16986823305286552,0.008666666666666666,0.08779171297031275,0.2946666666666667,0.5027782187648833,0.03666666666666667,0.10938244165740593,0.066,0.0007937767899666614,0.4646666666666667,0.1293856167645658,0.8009745462242683,0.7650207172461033,0.6182519495423113,2,False,1.0,0.25333333333333335,0.58,0.44,29.46666666666667,50.277821876488325,2062.0,2261.0
|
| 22 |
+
scsemi_n10__raw,Abd-S39,adult_sepsis,1500,4291,150,0.626,0.13819622465625728,0.066,0.06152412025168958,0.088,0.6933115823817292,0.019333333333333334,0.049638778839431366,0.004666666666666667,0.0013982754602656724,0.196,0.05593101841062689,1.2712340557756547,0.9633289157537908,0.6703509206382138,3,False,0.94,0.14,0.7066666666666667,0.26,8.799999999999999,69.33115823817292,2063.0,3523.0
|
| 23 |
+
scsemi_n10__raw,Abd-S47,adult_sepsis,1500,7971,150,0.8073333333333333,0.7027976414502571,0.14866666666666667,0.20474219044034625,0.02266666666666667,0.03224187680341237,0.004666666666666667,0.019069125580228326,0.011333333333333334,0.0006272738677706687,0.005333333333333333,0.040521891857985194,0.23048350269727766,0.6288356545294588,0.6426780620292534,1,True,0.82,0.12,0.8466666666666667,0.3933333333333333,2.2666666666666666,3.224187680341237,2064.0,2030.0
|
| 24 |
+
scsemi_n10__raw,Abd-S66,adult_sepsis,1500,7946,150,0.37,0.49295242889504154,0.098,0.23873647118046817,0.458,0.03788069468915178,0.042666666666666665,0.18688648376541656,0.0013333333333333333,0.0003775484520513466,0.03,0.04316637301787063,0.8421501803842604,0.47033269157789737,0.6120974715527667,16,False,0.9533333333333334,0.09333333333333334,0.49333333333333335,0.22,45.800000000000004,3.7880694689151775,2058.5,1821.0
|
| 25 |
+
scsemi_n10__raw,HC01,adult_HC,1500,10173,150,0.5493333333333333,0.5901897178806645,0.07333333333333333,0.09938071365378945,0.21066666666666667,0.1862774009633343,0.10266666666666667,0.06772830040302762,0.035333333333333335,0.028408532389658903,0.028666666666666667,0.028015334709525212,0.1338075297355746,0.3550119706716009,0.6566284626674332,7,False,0.7866666666666666,0.12,0.5066666666666667,0.32666666666666666,21.066666666666666,18.62774009633343,2062.5,2276.0
|
| 26 |
+
scsemi_n10__raw,HC07,adult_HC,1500,9812,150,0.578,0.3848348960456584,0.06466666666666666,0.03770892784345699,0.12666666666666668,0.21962902568283735,0.20466666666666666,0.3080921320831635,0.018,0.019262128006522626,0.008,0.03047289033836119,0.4402456855551026,0.4991259018586224,0.5939312944955693,9,False,0.8866666666666667,0.14,0.4266666666666667,0.26,12.666666666666668,21.962902568283734,2062.0,2035.0
|
| 27 |
+
scsemi_n10__raw,IC23,adult_ICU_ctrl,1500,13774,150,0.538,0.42819805430521274,0.09333333333333334,0.11986351096268331,0.2733333333333333,0.3843473210396399,0.025333333333333333,0.024466385944533178,0.014,0.007840859590532889,0.056,0.03528386815739799,0.27508833067131316,0.2960984586998728,0.6851947036283065,7,False,0.94,0.18666666666666668,0.6,0.36,27.333333333333332,38.434732103963995,2063.0,1894.0
|
| 28 |
+
scsemi_n10__raw,PHC03,ped_HC,1500,9638,150,0.7713333333333333,0.6757626063498651,0.168,0.17804523760116206,0.023333333333333334,0.055613197758871136,0.026,0.07273293214359826,0.006,0.011516912222452791,0.005333333333333333,0.006329113924050633,0.19114145396693646,0.5245802286446084,0.6077122393745884,7,False,0.8466666666666667,0.05333333333333334,0.7066666666666667,0.14,2.3333333333333335,5.561319775887114,2062.0,1660.5
|
| 29 |
+
scsemi_n10__raw,PIC04,ped_ICU_ctrl,1500,11535,150,0.42733333333333334,0.36341569137407886,0.072,0.08253142609449501,0.43533333333333335,0.4273948851322063,0.020666666666666667,0.03233636757693975,0.005333333333333333,0.006501950585175552,0.03933333333333333,0.08781967923710446,0.143712180320763,0.46601933835481935,0.5288577508060184,12,False,0.98,0.36666666666666664,0.9533333333333334,0.23333333333333334,43.53333333333333,42.73948851322063,2062.0,1144.0
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| 30 |
+
scsemi_n10__raw,Res-PS25,ped_sepsis,1500,6203,150,0.7633333333333333,0.3562792197323876,0.17133333333333334,0.42447202966306624,0.034,0.18458810253103336,0.011333333333333334,0.0095115266806384,0.006,0.005642431081734645,0.014,0.01950669031113977,0.8184669783438121,0.5472774959628155,0.6127352309131743,4,False,0.92,0.08666666666666667,0.74,0.4,3.4000000000000004,18.458810253103337,2060.0,2342.0
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| 31 |
+
scsemi_n10__raw,Res-S139,adult_sepsis,1500,2657,150,0.5853333333333334,0.3522770041400075,0.116,0.06925103500188182,0.052,0.26345502446368085,0.186,0.29055325555137373,0.004,0.00978547233722243,0.056666666666666664,0.014678208505833647,0.6435875047045541,0.4788067877633468,0.6389857712591512,7,False,0.76,0.14666666666666667,0.32,0.16,5.2,26.345502446368087,2063.0,1637.0
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| 32 |
+
scsemi_n10__raw,Res-S26,adult_sepsis,1500,6036,150,0.7473333333333333,0.6973161033797217,0.10666666666666667,0.145791915175613,0.059333333333333335,0.023028495692511596,0.08533333333333333,0.11911862160371106,0.0,0.0001656726308813784,0.0013333333333333333,0.0145791915175613,0.1726441351888667,0.608009358576924,0.5625782656413593,4,False,0.5933333333333334,0.07333333333333333,0.6,0.19333333333333333,5.933333333333334,2.3028495692511597,2064.5,3953.0
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| 33 |
+
scsemi_n10__raw,Res-S77,adult_sepsis,1500,7804,150,0.36733333333333335,0.685033316248078,0.096,0.20861096873398258,0.462,0.04651460789338801,0.034666666666666665,0.023193234238851872,0.0026666666666666666,0.0012813941568426447,0.037333333333333336,0.035366478728856995,0.8606219032974544,0.5993076173488051,0.6568658064673474,11,False,0.9333333333333333,0.07333333333333333,0.7133333333333334,0.38,46.2,4.651460789338801,2065.0,2095.0
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| 34 |
+
scsemi_n10__raw,Skin-S140,adult_sepsis,1500,7668,150,0.25066666666666665,0.2646061554512259,0.008666666666666666,0.23735002608242045,0.42,0.3272039645279082,0.005333333333333333,0.042383933229003655,0.017333333333333333,0.0003912363067292645,0.298,0.12806468440271257,0.5593468961919668,0.48827750640154627,0.6000581410961546,1,True,1.0,0.1,0.7533333333333333,0.21333333333333335,42.0,32.720396452790816,2066.0,2069.5
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| 35 |
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scsemi_n10__raw,Uri-S147,adult_sepsis,1500,7529,150,0.594,0.5427015539912339,0.08733333333333333,0.20268295922433258,0.18933333333333333,0.18262717492362865,0.009333333333333334,0.031212644441492896,0.029333333333333333,0.004648691725328729,0.09066666666666667,0.036126975693983265,0.27445787399831756,0.28425560234500524,0.5829340308101346,2,False,0.9866666666666667,0.08,0.8733333333333333,0.18,18.933333333333334,18.262717492362864,2062.0,2024.0
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| 36 |
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scsemi_n20__raw,Abd-PS19,ped_sepsis,1500,7984,150,0.43066666666666664,0.4622995991983968,0.086,0.11209919839679358,0.39666666666666667,0.2937124248496994,0.018666666666666668,0.05586172344689379,0.0033333333333333335,0.0156563126252505,0.06466666666666666,0.06037074148296593,0.21450033400133603,0.17976211899936204,0.6238784040571365,6,False,0.9933333333333333,0.12,0.6133333333333333,0.20666666666666667,39.666666666666664,29.37124248496994,2117.5,2111.0
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| 37 |
+
scsemi_n20__raw,Abd-PS23,ped_sepsis,1500,4309,150,0.39866666666666667,0.2529589231840334,0.4226666666666667,0.3272220932931075,0.06666666666666667,0.32142028312833604,0.082,0.013460199582269667,0.002,0.002088651659317707,0.028,0.08284984915293572,0.6193842345478455,0.5708838013443897,0.6674548765674739,3,False,0.8333333333333334,0.14,0.7533333333333333,0.17333333333333334,6.666666666666667,32.1420283128336,2117.0,1832.0
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| 38 |
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scsemi_n20__raw,Abd-S123,adult_sepsis,1500,6299,150,0.4073333333333333,0.16986823305286552,0.08866666666666667,0.08779171297031275,0.384,0.5027782187648833,0.04466666666666667,0.10938244165740593,0.0006666666666666666,0.0007937767899666614,0.07466666666666667,0.1293856167645658,0.47668010795364335,0.7650207172461033,0.7325496046803871,2,False,0.96,0.26,0.6933333333333334,0.4866666666666667,38.4,50.277821876488325,2118.0,2261.0
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| 39 |
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scsemi_n20__raw,Abd-S39,adult_sepsis,1500,4291,150,0.6106666666666667,0.13819622465625728,0.06933333333333333,0.06152412025168958,0.088,0.6933115823817292,0.018,0.049638778839431366,0.005333333333333333,0.0013982754602656724,0.20866666666666667,0.05593101841062689,1.2739007224423213,0.9633289157537908,0.675112798039738,3,False,0.9333333333333333,0.14666666666666667,0.6733333333333333,0.22666666666666666,8.799999999999999,69.33115823817292,2117.0,3523.0
|
| 40 |
+
scsemi_n20__raw,Abd-S47,adult_sepsis,1500,7971,150,0.5846666666666667,0.7027976414502571,0.2846666666666667,0.20474219044034625,0.07133333333333333,0.03224187680341237,0.04466666666666667,0.019069125580228326,0.012,0.0006272738677706687,0.0026666666666666666,0.040521891857985194,0.31197239994981807,0.6288356545294588,0.6513361035520289,3,False,0.94,0.11333333333333333,0.7266666666666667,0.3,7.133333333333333,3.224187680341237,2119.0,2030.0
|
| 41 |
+
scsemi_n20__raw,Abd-S66,adult_sepsis,1500,7946,150,0.37066666666666664,0.49295242889504154,0.096,0.23873647118046817,0.45866666666666667,0.03788069468915178,0.042,0.18688648376541656,0.0026666666666666666,0.0003775484520513466,0.03,0.04316637301787063,0.8461501803842604,0.47033269157789737,0.6132155416866489,16,False,0.9533333333333334,0.10666666666666667,0.44666666666666666,0.22666666666666666,45.86666666666667,3.7880694689151775,2116.0,1821.0
|
| 42 |
+
scsemi_n20__raw,HC01,adult_HC,1500,10173,150,0.5506666666666666,0.5901897178806645,0.07266666666666667,0.09938071365378945,0.21466666666666667,0.1862774009633343,0.10066666666666667,0.06772830040302762,0.03133333333333333,0.028408532389658903,0.03,0.028015334709525212,0.1324741964022413,0.3550119706716009,0.6574144784984427,7,False,0.8266666666666667,0.12,0.44666666666666666,0.3,21.46666666666667,18.62774009633343,2119.0,2276.0
|
| 43 |
+
scsemi_n20__raw,HC07,adult_HC,1500,9812,150,0.588,0.3848348960456584,0.06266666666666666,0.03770892784345699,0.126,0.21962902568283735,0.19333333333333333,0.3080921320831635,0.022,0.019262128006522626,0.008,0.03047289033836119,0.46172142954205736,0.4991259018586224,0.5938391165298176,8,False,0.8866666666666667,0.13333333333333333,0.4266666666666667,0.2866666666666667,12.6,21.962902568283734,2117.0,2035.0
|
| 44 |
+
scsemi_n20__raw,IC23,adult_ICU_ctrl,1500,13774,150,0.536,0.42819805430521274,0.094,0.11986351096268331,0.27466666666666667,0.3843473210396399,0.027333333333333334,0.024466385944533178,0.012666666666666666,0.007840859590532889,0.05533333333333333,0.03528386815739799,0.2710883306713131,0.2960984586998728,0.6835300971900045,7,False,0.9533333333333334,0.17333333333333334,0.62,0.31333333333333335,27.46666666666667,38.434732103963995,2117.0,1894.0
|
| 45 |
+
scsemi_n20__raw,PHC03,ped_HC,1500,9638,150,0.5393333333333333,0.6757626063498651,0.2633333333333333,0.17804523760116206,0.08133333333333333,0.055613197758871136,0.09333333333333334,0.07273293214359826,0.015333333333333332,0.011516912222452791,0.007333333333333333,0.006329113924050633,0.27285854603306353,0.5245802286446084,0.618276150864453,15,False,0.9333333333333333,0.04666666666666667,0.6466666666666666,0.08666666666666667,8.133333333333333,5.561319775887114,2120.0,1660.5
|
| 46 |
+
scsemi_n20__raw,PIC04,ped_ICU_ctrl,1500,11535,150,0.43,0.36341569137407886,0.07266666666666667,0.08253142609449501,0.434,0.4273948851322063,0.018666666666666668,0.03233636757693975,0.006,0.006501950585175552,0.03866666666666667,0.08781967923710446,0.1463788469874296,0.46601933835481935,0.5276812707374688,12,False,0.9666666666666667,0.3466666666666667,0.94,0.14,43.4,42.73948851322063,2116.0,1144.0
|
| 47 |
+
scsemi_n20__raw,Res-PS25,ped_sepsis,1500,6203,150,0.764,0.3562792197323876,0.17133333333333334,0.42447202966306624,0.032,0.18458810253103336,0.010666666666666666,0.0095115266806384,0.007333333333333333,0.005642431081734645,0.014666666666666666,0.01950669031113977,0.8211336450104788,0.5472774959628155,0.6120968573345883,4,False,0.9066666666666666,0.08666666666666667,0.7066666666666667,0.35333333333333333,3.2,18.458810253103337,2119.0,2342.0
|
| 48 |
+
scsemi_n20__raw,Res-S139,adult_sepsis,1500,2657,150,0.57,0.3522770041400075,0.11666666666666667,0.06925103500188182,0.051333333333333335,0.26345502446368085,0.192,0.29055325555137373,0.0033333333333333335,0.00978547233722243,0.06666666666666667,0.014678208505833647,0.6342541713712205,0.4788067877633468,0.6383647281093235,7,False,0.74,0.13333333333333333,0.32,0.17333333333333334,5.133333333333334,26.345502446368087,2117.0,1637.0
|
| 49 |
+
scsemi_n20__raw,Res-S26,adult_sepsis,1500,6036,150,0.742,0.6973161033797217,0.10733333333333334,0.145791915175613,0.058,0.023028495692511596,0.09,0.11911862160371106,0.0006666666666666666,0.0001656726308813784,0.002,0.0145791915175613,0.160312789927104,0.608009358576924,0.5621966430458235,4,False,0.64,0.07333333333333333,0.5533333333333333,0.18666666666666668,5.800000000000001,2.3028495692511597,2119.0,3953.0
|
| 50 |
+
scsemi_n20__raw,Res-S77,adult_sepsis,1500,7804,150,0.36333333333333334,0.685033316248078,0.09666666666666666,0.20861096873398258,0.462,0.04651460789338801,0.037333333333333336,0.023193234238851872,0.0033333333333333335,0.0012813941568426447,0.037333333333333336,0.035366478728856995,0.867288569964121,0.5993076173488051,0.6572289719480948,11,False,0.94,0.07333333333333333,0.66,0.36,46.2,4.651460789338801,2120.0,2095.0
|
| 51 |
+
scsemi_n20__raw,Skin-S140,adult_sepsis,1500,7668,150,0.422,0.2646061554512259,0.07666666666666666,0.23735002608242045,0.412,0.3272039645279082,0.010666666666666666,0.042383933229003655,0.0013333333333333333,0.0003912363067292645,0.07733333333333334,0.12806468440271257,0.48626395409493994,0.48827750640154627,0.6378854756306844,1,True,0.9933333333333333,0.1,0.7066666666666667,0.30666666666666664,41.199999999999996,32.720396452790816,2117.0,2069.5
|
| 52 |
+
scsemi_n20__raw,Uri-S147,adult_sepsis,1500,7529,150,0.5353333333333333,0.5427015539912339,0.27666666666666667,0.20268295922433258,0.09266666666666666,0.18262717492362865,0.076,0.031212644441492896,0.011333333333333334,0.004648691725328729,0.008,0.036126975693983265,0.2509114092176916,0.28425560234500524,0.6127154638557136,2,False,0.9,0.08,0.7666666666666667,0.26666666666666666,9.266666666666666,18.262717492362864,2119.0,2024.0
|
| 53 |
+
scsemi_n40__raw,Abd-PS19,ped_sepsis,1500,7984,150,0.43066666666666664,0.4622995991983968,0.086,0.11209919839679358,0.39666666666666667,0.2937124248496994,0.017333333333333333,0.05586172344689379,0.0026666666666666666,0.0156563126252505,0.06666666666666667,0.06037074148296593,0.21850033400133606,0.17976211899936204,0.6239026814234022,6,False,1.0,0.12,0.56,0.19333333333333333,39.666666666666664,29.37124248496994,1984.0,2111.0
|
| 54 |
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scsemi_n40__raw,Abd-PS23,ped_sepsis,1500,4309,150,0.396,0.2529589231840334,0.422,0.3272220932931075,0.06533333333333333,0.32142028312833604,0.08466666666666667,0.013460199582269667,0.0006666666666666666,0.002088651659317707,0.03133333333333333,0.08284984915293572,0.6180509012145122,0.5708838013443897,0.6683017943605515,4,False,0.86,0.12666666666666668,0.7266666666666667,0.20666666666666667,6.533333333333332,32.1420283128336,1985.0,1832.0
|
| 55 |
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scsemi_n40__raw,Abd-S123,adult_sepsis,1500,6299,150,0.524,0.16986823305286552,0.17066666666666666,0.08779171297031275,0.04933333333333333,0.5027782187648833,0.174,0.10938244165740593,0.004,0.0007937767899666614,0.078,0.1293856167645658,1.0096610043922316,0.7650207172461033,0.5751479896830505,4,False,0.8533333333333334,0.26,0.56,0.4266666666666667,4.933333333333334,50.277821876488325,1984.0,2261.0
|
| 56 |
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scsemi_n40__raw,Abd-S39,adult_sepsis,1500,4291,150,0.3433333333333333,0.13819622465625728,0.07,0.06152412025168958,0.41,0.6933115823817292,0.06866666666666667,0.049638778839431366,0.004,0.0013982754602656724,0.104,0.05593101841062689,0.5666231647634584,0.9633289157537908,0.6200946402398257,4,False,0.96,0.13333333333333333,0.5133333333333333,0.26666666666666666,41.0,69.33115823817292,1982.5,3523.0
|
| 57 |
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scsemi_n40__raw,Abd-S47,adult_sepsis,1500,7971,150,0.584,0.7027976414502571,0.284,0.20474219044034625,0.072,0.03224187680341237,0.046,0.019069125580228326,0.012666666666666666,0.0006272738677706687,0.0013333333333333333,0.040521891857985194,0.315972399949818,0.6288356545294588,0.6519985015924732,3,False,0.9,0.10666666666666667,0.7133333333333334,0.32666666666666666,7.199999999999999,3.224187680341237,1988.0,2030.0
|
| 58 |
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scsemi_n40__raw,Abd-S66,adult_sepsis,1500,7946,150,0.37,0.49295242889504154,0.09466666666666666,0.23873647118046817,0.4593333333333333,0.03788069468915178,0.042666666666666665,0.18688648376541656,0.002,0.0003775484520513466,0.03133333333333333,0.04316637301787063,0.8461501803842604,0.47033269157789737,0.6133791592943192,16,False,0.9666666666666667,0.09333333333333334,0.52,0.18666666666666668,45.93333333333333,3.7880694689151775,1984.0,1821.0
|
| 59 |
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scsemi_n40__raw,HC01,adult_HC,1500,10173,150,0.6,0.5901897178806645,0.059333333333333335,0.09938071365378945,0.13533333333333333,0.1862774009633343,0.164,0.06772830040302762,0.020666666666666667,0.028408532389658903,0.020666666666666667,0.028015334709525212,0.2121639634326157,0.3550119706716009,0.6507719414152203,6,False,0.8466666666666667,0.10666666666666667,0.44666666666666666,0.24666666666666667,13.533333333333333,18.62774009633343,1983.5,2276.0
|
| 60 |
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scsemi_n40__raw,HC07,adult_HC,1500,9812,150,0.5506666666666666,0.3848348960456584,0.066,0.03770892784345699,0.13333333333333333,0.21962902568283735,0.21733333333333332,0.3080921320831635,0.012666666666666666,0.019262128006522626,0.02,0.03047289033836119,0.3882456855551026,0.4991259018586224,0.733295046981535,2,False,0.8666666666666667,0.14,0.41333333333333333,0.26,13.333333333333334,21.962902568283734,1984.0,2035.0
|
| 61 |
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scsemi_n40__raw,IC23,adult_ICU_ctrl,1500,13774,150,0.5573333333333333,0.42819805430521274,0.17866666666666667,0.11986351096268331,0.16733333333333333,0.3843473210396399,0.012666666666666666,0.024466385944533178,0.014666666666666666,0.007840859590532889,0.06933333333333333,0.03528386815739799,0.45762741396834616,0.2960984586998728,0.661169365383995,7,False,0.9666666666666667,0.16,0.6466666666666666,0.21333333333333335,16.733333333333334,38.434732103963995,1986.0,1894.0
|
| 62 |
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scsemi_n40__raw,PHC03,ped_HC,1500,9638,150,0.5413333333333333,0.6757626063498651,0.26,0.17804523760116206,0.07933333333333334,0.055613197758871136,0.09266666666666666,0.07273293214359826,0.018666666666666668,0.011516912222452791,0.008,0.006329113924050633,0.26885854603306353,0.5245802286446084,0.6188750885967409,15,False,0.9466666666666667,0.04666666666666667,0.6266666666666667,0.11333333333333333,7.933333333333334,5.561319775887114,1984.0,1660.5
|
| 63 |
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scsemi_n40__raw,PIC04,ped_ICU_ctrl,1500,11535,150,0.42733333333333334,0.36341569137407886,0.074,0.08253142609449501,0.436,0.4273948851322063,0.018666666666666668,0.03233636757693975,0.004,0.006501950585175552,0.04,0.08781967923710446,0.1450455136540963,0.46601933835481935,0.5281693993618196,12,False,0.98,0.35333333333333333,0.9066666666666666,0.14,43.6,42.73948851322063,1987.0,1144.0
|
| 64 |
+
scsemi_n40__raw,Res-PS25,ped_sepsis,1500,6203,150,0.7646666666666667,0.3562792197323876,0.17333333333333334,0.42447202966306624,0.034,0.18458810253103336,0.011333333333333334,0.0095115266806384,0.004666666666666667,0.005642431081734645,0.012,0.01950669031113977,0.8204185071739482,0.5472774959628155,0.6116648540734297,4,False,0.8933333333333333,0.08666666666666667,0.7866666666666666,0.38666666666666666,3.4000000000000004,18.458810253103337,1986.0,2342.0
|
| 65 |
+
scsemi_n40__raw,Res-S139,adult_sepsis,1500,2657,150,0.59,0.3522770041400075,0.11666666666666667,0.06925103500188182,0.05266666666666667,0.26345502446368085,0.18266666666666667,0.29055325555137373,0.0033333333333333335,0.00978547233722243,0.05466666666666667,0.014678208505833647,0.6502541713712207,0.4788067877633468,0.6416143888009395,7,False,0.7466666666666667,0.12666666666666668,0.38666666666666666,0.18,5.266666666666667,26.345502446368087,1984.0,1637.0
|
| 66 |
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scsemi_n40__raw,Res-S26,adult_sepsis,1500,6036,150,0.75,0.6973161033797217,0.10666666666666667,0.145791915175613,0.058666666666666666,0.023028495692511596,0.08333333333333333,0.11911862160371106,0.0,0.0001656726308813784,0.0013333333333333333,0.0145791915175613,0.17664413518886676,0.608009358576924,0.5622838825105632,4,False,0.6866666666666666,0.06,0.56,0.22,5.866666666666666,2.3028495692511597,1985.0,3953.0
|
| 67 |
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scsemi_n40__raw,Res-S77,adult_sepsis,1500,7804,150,0.36533333333333334,0.685033316248078,0.096,0.20861096873398258,0.4633333333333333,0.04651460789338801,0.03666666666666667,0.023193234238851872,0.0026666666666666666,0.0012813941568426447,0.036,0.035366478728856995,0.8646219032974544,0.5993076173488051,0.6576473768691723,11,False,0.94,0.07333333333333333,0.6133333333333333,0.37333333333333335,46.33333333333333,4.651460789338801,1986.0,2095.0
|
| 68 |
+
scsemi_n40__raw,Skin-S140,adult_sepsis,1500,7668,150,0.4206666666666667,0.2646061554512259,0.07733333333333334,0.23735002608242045,0.412,0.3272039645279082,0.01,0.042383933229003655,0.0013333333333333333,0.0003912363067292645,0.07866666666666666,0.12806468440271257,0.48359728742827335,0.48827750640154627,0.6385908185041091,1,True,0.98,0.11333333333333333,0.6533333333333333,0.26,41.199999999999996,32.720396452790816,1983.0,2069.5
|
| 69 |
+
scsemi_n40__raw,Uri-S147,adult_sepsis,1500,7529,150,0.5433333333333333,0.5427015539912339,0.23933333333333334,0.20268295922433258,0.13533333333333333,0.18262717492362865,0.050666666666666665,0.031212644441492896,0.008666666666666666,0.004648691725328729,0.02266666666666667,0.036126975693983265,0.12150830123522384,0.28425560234500524,0.595544984875411,2,False,0.86,0.08,0.6666666666666666,0.29333333333333333,13.533333333333333,18.262717492362864,1984.0,2024.0
|
paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/scsemi_budget_20261002/fold0/summary.json
ADDED
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@@ -0,0 +1,1360 @@
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|
|
| 1 |
+
{
|
| 2 |
+
"schema": "paired_ft_scores.v1",
|
| 3 |
+
"dataset": "ye2026_sepsis",
|
| 4 |
+
"written_utc": "2026-10-08T02:06:11.855381+00:00",
|
| 5 |
+
"command": [
|
| 6 |
+
"/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/tools/score_ft.py",
|
| 7 |
+
"--dataset",
|
| 8 |
+
"ye2026_sepsis",
|
| 9 |
+
"--out",
|
| 10 |
+
"/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/scsemi_budget_20261002/fold0",
|
| 11 |
+
"--threads",
|
| 12 |
+
"8",
|
| 13 |
+
"--arm",
|
| 14 |
+
"scsemi_n5__raw=/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/generated/ye2026_sepsis/fold0/scsemi_n5__raw.npz",
|
| 15 |
+
"--arm",
|
| 16 |
+
"scsemi_n10__raw=/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/generated/ye2026_sepsis/fold0/scsemi_n10__raw.npz",
|
| 17 |
+
"--arm",
|
| 18 |
+
"scsemi_n20__raw=/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/generated/ye2026_sepsis/fold0/scsemi_n20__raw.npz",
|
| 19 |
+
"--arm",
|
| 20 |
+
"scsemi_n40__raw=/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/generated/ye2026_sepsis/fold0/scsemi_n40__raw.npz",
|
| 21 |
+
"--case-groups",
|
| 22 |
+
"adult_sepsis,ped_sepsis",
|
| 23 |
+
"--control-groups",
|
| 24 |
+
"adult_HC,adult_ICU_ctrl,ped_HC,ped_ICU_ctrl"
|
| 25 |
+
],
|
| 26 |
+
"arms": [
|
| 27 |
+
"scsemi_n5__raw",
|
| 28 |
+
"scsemi_n10__raw",
|
| 29 |
+
"scsemi_n20__raw",
|
| 30 |
+
"scsemi_n40__raw"
|
| 31 |
+
],
|
| 32 |
+
"donors": [
|
| 33 |
+
"Abd-PS19",
|
| 34 |
+
"Abd-PS23",
|
| 35 |
+
"Abd-S123",
|
| 36 |
+
"Abd-S39",
|
| 37 |
+
"Abd-S47",
|
| 38 |
+
"Abd-S66",
|
| 39 |
+
"HC01",
|
| 40 |
+
"HC07",
|
| 41 |
+
"IC23",
|
| 42 |
+
"PHC03",
|
| 43 |
+
"PIC04",
|
| 44 |
+
"Res-PS25",
|
| 45 |
+
"Res-S139",
|
| 46 |
+
"Res-S26",
|
| 47 |
+
"Res-S77",
|
| 48 |
+
"Skin-S140",
|
| 49 |
+
"Uri-S147"
|
| 50 |
+
],
|
| 51 |
+
"n_donors": 17,
|
| 52 |
+
"reference": {
|
| 53 |
+
"cache": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scoring_cache/ye2026_sepsis",
|
| 54 |
+
"reference_sha256": "bac12da8a241652cb75100a1b082b2be56806c9bf2fd20ce6f927f19683ea5b8",
|
| 55 |
+
"features_sha256": "0cfda4b0cf1caf5e5319d071697c228d894e992fd090e2b3ed450bd6c9887d46",
|
| 56 |
+
"n_r1_cells": 2550,
|
| 57 |
+
"pca": {
|
| 58 |
+
"n_components": 50,
|
| 59 |
+
"explained_variance_ratio_sum": 0.3596964478492737,
|
| 60 |
+
"n_fit_cells": 2550
|
| 61 |
+
},
|
| 62 |
+
"r2_control": {
|
| 63 |
+
"precision": 0.9968627450980392,
|
| 64 |
+
"coverage": 1.0,
|
| 65 |
+
"density": 2.1749019607843136,
|
| 66 |
+
"n_query": 2550,
|
| 67 |
+
"depth_matched": {
|
| 68 |
+
"precision": 0.996078431372549,
|
| 69 |
+
"coverage": 1.0,
|
| 70 |
+
"density": 2.1365882352941177
|
| 71 |
+
}
|
| 72 |
+
},
|
| 73 |
+
"observed_l1_loo_null_mean": 0.5132314215340571
|
| 74 |
+
},
|
| 75 |
+
"contrast_definition": {
|
| 76 |
+
"enabled": true,
|
| 77 |
+
"rule": "explicit --case-groups / --control-groups",
|
| 78 |
+
"group_source": "features groups",
|
| 79 |
+
"case_groups": [
|
| 80 |
+
"adult_sepsis",
|
| 81 |
+
"ped_sepsis"
|
| 82 |
+
],
|
| 83 |
+
"control_groups": [
|
| 84 |
+
"adult_HC",
|
| 85 |
+
"adult_ICU_ctrl",
|
| 86 |
+
"ped_HC",
|
| 87 |
+
"ped_ICU_ctrl"
|
| 88 |
+
],
|
| 89 |
+
"n_case_donors": 12,
|
| 90 |
+
"n_control_donors": 5,
|
| 91 |
+
"n_donors_in_neither": 0,
|
| 92 |
+
"case": [
|
| 93 |
+
true,
|
| 94 |
+
true,
|
| 95 |
+
true,
|
| 96 |
+
true,
|
| 97 |
+
true,
|
| 98 |
+
true,
|
| 99 |
+
false,
|
| 100 |
+
false,
|
| 101 |
+
false,
|
| 102 |
+
false,
|
| 103 |
+
false,
|
| 104 |
+
true,
|
| 105 |
+
true,
|
| 106 |
+
true,
|
| 107 |
+
true,
|
| 108 |
+
true,
|
| 109 |
+
true
|
| 110 |
+
],
|
| 111 |
+
"ctrl": [
|
| 112 |
+
false,
|
| 113 |
+
false,
|
| 114 |
+
false,
|
| 115 |
+
false,
|
| 116 |
+
false,
|
| 117 |
+
false,
|
| 118 |
+
true,
|
| 119 |
+
true,
|
| 120 |
+
true,
|
| 121 |
+
true,
|
| 122 |
+
true,
|
| 123 |
+
false,
|
| 124 |
+
false,
|
| 125 |
+
false,
|
| 126 |
+
false,
|
| 127 |
+
false,
|
| 128 |
+
false
|
| 129 |
+
],
|
| 130 |
+
"groups": [
|
| 131 |
+
"ped_sepsis",
|
| 132 |
+
"ped_sepsis",
|
| 133 |
+
"adult_sepsis",
|
| 134 |
+
"adult_sepsis",
|
| 135 |
+
"adult_sepsis",
|
| 136 |
+
"adult_sepsis",
|
| 137 |
+
"adult_HC",
|
| 138 |
+
"adult_HC",
|
| 139 |
+
"adult_ICU_ctrl",
|
| 140 |
+
"ped_HC",
|
| 141 |
+
"ped_ICU_ctrl",
|
| 142 |
+
"ped_sepsis",
|
| 143 |
+
"adult_sepsis",
|
| 144 |
+
"adult_sepsis",
|
| 145 |
+
"adult_sepsis",
|
| 146 |
+
"adult_sepsis",
|
| 147 |
+
"adult_sepsis"
|
| 148 |
+
]
|
| 149 |
+
},
|
| 150 |
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paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/scsemi_budget_20261002/fold1/arms/scsemi_n10__raw/deg_top50_lists.csv
ADDED
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size 194481
|