Archive 4 checkpoints (1-4)

paper-releases/pbisc-diffusion/updates/20261006T033847Z-bulkonly-lora5-k4000/diffusion/dataset/server_1/model8/plans/bulkonly_lora5_k4000_20261006/logs/imperial_eskd-d4-merge.log

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+{"output_sha256": "b286609b60048aef6987258f8e767efae1fa0e80761375662dc33afd9723637d", "cells": 214500, "bulks": 143, "seed": 24260939, "seconds": 41.8}

paper-releases/pbisc-diffusion/updates/20261006T033847Z-bulkonly-lora5-k4000/diffusion/dataset/server_1/model8/plans/bulkonly_lora5_k4000_20261006/logs/imperial_eskd-d4-pack.log

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+{"file": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/bulkonly_lora5_k4000_20261006/share/imperial_eskd/lora5k4_bulkonly_imperial_eskd_draw4.h5ad", "cells": 656000, "samples": 164, "nnz": 158864609, "bytes": 363194098}

paper-releases/pbisc-diffusion/updates/20261006T033847Z-bulkonly-lora5-k4000/diffusion/dataset/server_1/model8/plans/bulkonly_lora5_k4000_20261006/logs/imperial_eskd-d4-pgen.log

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+{"dataset": "imperial_eskd", "draw": 4, "cells": 214500, "samples": 143, "seconds": 25.9}

paper-releases/pbisc-diffusion/updates/20261006T033847Z-bulkonly-lora5-k4000/diffusion/dataset/server_1/model8/plans/bulkonly_lora5_k4000_20261006/logs/imperial_eskd-d4-score.log

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+11:34:20 imperial_eskd: 143 scored donors, 2 arm(s); fitting the observed reference
+11:34:28 reference: R1 21382 cells, PCA var 0.263, R2 control P/C 0.9696/0.9998; contrast on
+11:34:28 observed top-50 DEG lists: T 50 (sig 1194, 104+31 donors, 244943 cells), B 50 (sig 310, 104+31 donors, 46230 cells), Mono 50 (sig 305, 103+31 donors, 77634 cells), NK 50 (sig 431, 104+31 donors, 65766 cells), DC 50 (sig 295, 104+31 donors, 12690 cells)
+11:34:28 lora5: loading generated_counts (214500 cells in the NPZ, 214500 scored)
+11:34:51 lora5: Poisson read-out nnz 52263488 (whole NPZ), median library 1008; annotating
+11:35:06 lora5: L1 0.4814 (null 0.5095285177538514) P/C 0.8319/0.6369 pb r 0.8718 top1 0.028 mono 17.2% (37.7 s)
+11:35:06 lora5: top-50 DEG 113/250 (T 31, B 21, Mono 26, NK 22, DC 13); broadcast 76 (0.46 s)
+11:35:06 lora5_k4000: loading generated_counts (214500 cells in the NPZ, 214500 scored)
+11:35:27 lora5_k4000: Poisson read-out nnz 51910203 (whole NPZ), median library 996; annotating
+11:35:40 lora5_k4000: L1 0.4498 (null 0.5095285177538514) P/C 0.8285/0.6390 pb r 0.8727 top1 0.021 mono 17.3% (34.3 s)
+11:35:40 lora5_k4000: top-50 DEG 106/250 (T 32, B 15, Mono 22, NK 21, DC 16); broadcast 76 (0.42 s)
+             comp_l1  comp_l1_obs_loo_null  precision  coverage  precision_dm  coverage_dm  pb_r_median  pb_top1  mono_pct_gen  mono_pct_obs  median_umi_gen  median_umi_obs  contrast_mean_cp10k_r_gen  contrast_pseudobulk_log1p_cpm_r_gen  contrast_mean_cp10k_r_broadcast  contrast_pseudobulk_log1p_cpm_r_broadcast  deg_top50_T  deg_top50_B  deg_top50_Mono  deg_top50_NK  deg_top50_DC  deg_top50_sum  deg_top50_max  deg_top50_sum_4type  deg_top50_sum_broadcast  seconds
+lora5         0.4814                0.5095     0.8319    0.6369        0.8529       0.7896       0.8718    0.028       17.1669       17.5679          1008.0          1367.0                     0.7492                               0.5519                           0.6565                                     0.6057         31.0         21.0            26.0          22.0          13.0          113.0          250.0                100.0                     76.0     37.7
+lora5_k4000   0.4498                0.5095     0.8285    0.6390        0.8553       0.7885       0.8727    0.021       17.2503       17.5679           996.0          1367.0                     0.7418                               0.5542                           0.6565                                     0.6057         32.0         15.0            22.0          21.0          16.0          106.0          250.0                 90.0                     76.0     34.3
+11:35:41 done in 83.9 s -> /home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/bulkonly_lora5_k4000_20261006/scores/imperial_eskd/draw4
+removed the K = 1,000 copy /home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/bulkonly_lora5_k4000_20261006/ref_k1000/imperial_eskd/draw4/lora__raw.npz (sha in COPY.json)
+{"lora5": {"comp_l1": 0.4814, "coverage": 0.6369, "pb_r_median": 0.8718, "contrast_mean_cp10k_r_gen": 0.7492, "deg_top50_sum": 113}, "lora5_k4000": {"comp_l1": 0.4498, "coverage": 0.639, "pb_r_median": 0.8727, "contrast_mean_cp10k_r_gen": 0.7418, "deg_top50_sum": 106}}