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  1. paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/cibersortx/immicro/cv4/out_fractions/.run.log +70 -0
  2. paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/cibersortx/immicro/fewshot0/out_fractions/.run.log +151 -0
  3. paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/cibersortx/immicro/fewshot1/out_fractions/.run.log +151 -0
  4. paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/cibersortx/immicro/fewshot2/out_fractions/.run.log +151 -0
paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/cibersortx/immicro/cv4/out_fractions/.run.log ADDED
@@ -0,0 +1,70 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ >Running CIBERSORTxFractions...
2
+ >[Options] username: [REDACTED]
3
+ >[Options] token: [REDACTED]
4
+ >[Options] single_cell: TRUE
5
+ >[Options] refsample: refsample.txt
6
+ >[Options] mixture: mixture.txt
7
+ >[Options] rmbatchSmode: TRUE
8
+ >[Options] fraction: 0
9
+ >[Options] replicates: 5
10
+ >[Options] sampling: 0.5
11
+ >[Options] G.min: 300
12
+ >[Options] G.max: 500
13
+ >[Options] q.value: 0.01
14
+ >[Options] perm: 0
15
+ >[Options] QN: FALSE
16
+ >[Options] verbose: TRUE
17
+ >Making reference sample file.
18
+ >Making phenotype class file.
19
+ >==========Signature Matrix Settings============
20
+ >Pure samples file: /src/outdir//CIBERSORTx_refsample_inferred_refsample.txt
21
+ >Phenotype classes file: /src/outdir//CIBERSORTx_refsample_inferred_phenoclasses.txt
22
+ >Minimum number of DEGs to consider from each phenotype for signature matrix set to: 300
23
+ >Maximum number of DEGs to consider from each phenotype for signature matrix set to: 500
24
+ >Q-value for signature matrix construction set to: 0.01
25
+ >Quantile normalization of input samples is disabled
26
+ >===============================================
27
+ >C++14
28
+ >Loaded 30 columns and 16131 rows
29
+ >=============Make Signature Matrix=============
30
+ >Maximum condition number (kappa):999
31
+ >49891 DEG expressed across 6 samples were identified
32
+ >Group size: 491, Kappa: 13.298321751832
33
+ >Best kappa: 13.298321751832
34
+ >SVD UpperRightDiag: 38361.4
35
+ >SVD LowerRightDiag: 2884.68
36
+ >=============CIBERSORTx Settings===============
37
+ >Mixture file: /src/data/mixture.txt
38
+ >Signature matrix file: /src/outdir//CIBERSORTx_refsample_inferred_phenoclasses.CIBERSORTx_refsample_inferred_refsample.bm.K999.txt
39
+ >Enable verbose output
40
+ >Do S-mode batch correction
41
+ >==================CIBERSORTx===================
42
+ >Adjusting mixtures with S-mode batch correction.
43
+ >Running CIBERSORTx on unadjusted mixtures with S-mode adjusted signature matrix.
44
+ >=============CIBERSORTx Settings===============
45
+ >Mixture file: /src/data/mixture.txt
46
+ >Signature matrix file: /src/outdir//CIBERSORTx_sigmatrix_Adjusted.txt
47
+ >Enable verbose output
48
+ >==================CIBERSORTx===================
49
+ column B cell DC Monocyte NK cell Other T cell P-value Correlation RMSE %Completed
50
+ 1 0.0405906 0.0895975 0.261981 0.0226177 0.0843313 0.500882 9999 4.7619
51
+ 2 0.036669 0.11212 0.290354 0.000629363 0.123394 0.436834 9999 9.52381
52
+ 3 0.108716 0 0.146376 0 0.158354 0.586553 9999 14.2857
53
+ 4 0.14236 0 0.194981 0.0137686 0.117042 0.53185 9999 19.0476
54
+ 5 0.123136 0 0.415051 0.0350026 0.0711622 0.355649 9999 23.8095
55
+ 6 0.169379 0 0.218533 0 0.128683 0.483406 9999 28.5714
56
+ 7 0.0813904 0.0629583 0.310592 0 0.0767133 0.468346 9999 33.3333
57
+ 8 0.0784917 0.0259852 0.0593011 0 0.179261 0.656961 9999 38.0952
58
+ 9 0.108249 0.054804 0.192315 0 0.161602 0.483029 9999 42.8571
59
+ 10 0.109107 0.0408181 0.176143 0 0.140503 0.533429 9999 47.619
60
+ 11 0.127872 0 0.171718 0.0429936 0.167201 0.490215 9999 52.381
61
+ 12 0.107466 0.0138248 0.23906 0 0.185027 0.454622 9999 57.1429
62
+ 13 0.115521 0.119342 0.245832 0.0213924 0.209484 0.288429 9999 61.9048
63
+ 14 0.0638015 0.0707808 0.345228 0.0612049 0.0835781 0.375406 9999 66.6667
64
+ 15 0.108901 0 0.287228 0 0.136904 0.466967 9999 71.4286
65
+ 16 0.0477161 0.0750607 0.221588 0 0.239713 0.415922 9999 76.1905
66
+ 17 0.0764069 0.0278466 0.22307 0 0.0919392 0.580738 9999 80.9524
67
+ 18 0.0196799 0.0503076 0.155858 0 0.150626 0.623529 9999 85.7143
68
+ 19 0.0820163 0 0.241844 0.00703162 0.394321 0.274787 9999 90.4762
69
+ 20 0.0840025 0.0239991 0.251508 0.0554556 0.146192 0.438843 9999 95.2381
70
+ 21 0.0853241 0.0549992 0.351945 0.0236418 0.0887354 0.395354 9999 100
paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/cibersortx/immicro/fewshot0/out_fractions/.run.log ADDED
@@ -0,0 +1,151 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ >Running CIBERSORTxFractions...
2
+ >[Options] username: [REDACTED]
3
+ >[Options] token: [REDACTED]
4
+ >[Options] single_cell: TRUE
5
+ >[Options] refsample: refsample.txt
6
+ >[Options] mixture: mixture.txt
7
+ >[Options] rmbatchSmode: TRUE
8
+ >[Options] fraction: 0
9
+ >[Options] replicates: 5
10
+ >[Options] sampling: 0.5
11
+ >[Options] G.min: 300
12
+ >[Options] G.max: 500
13
+ >[Options] q.value: 0.01
14
+ >[Options] perm: 0
15
+ >[Options] QN: FALSE
16
+ >[Options] verbose: TRUE
17
+ >Making reference sample file.
18
+ >Making phenotype class file.
19
+ >==========Signature Matrix Settings============
20
+ >Pure samples file: /src/outdir//CIBERSORTx_refsample_inferred_refsample.txt
21
+ >Phenotype classes file: /src/outdir//CIBERSORTx_refsample_inferred_phenoclasses.txt
22
+ >Minimum number of DEGs to consider from each phenotype for signature matrix set to: 300
23
+ >Maximum number of DEGs to consider from each phenotype for signature matrix set to: 500
24
+ >Q-value for signature matrix construction set to: 0.01
25
+ >Quantile normalization of input samples is disabled
26
+ >===============================================
27
+ >C++14
28
+ >Loaded 30 columns and 16131 rows
29
+ >=============Make Signature Matrix=============
30
+ >Maximum condition number (kappa):999
31
+ >46497 DEG expressed across 6 samples were identified
32
+ >Group size: 484, Kappa: 30.405432413935
33
+ >Best kappa: 30.405432413935
34
+ >SVD UpperRightDiag: 39457
35
+ >SVD LowerRightDiag: 1297.7
36
+ >=============CIBERSORTx Settings===============
37
+ >Mixture file: /src/data/mixture.txt
38
+ >Signature matrix file: /src/outdir//CIBERSORTx_refsample_inferred_phenoclasses.CIBERSORTx_refsample_inferred_refsample.bm.K999.txt
39
+ >Enable verbose output
40
+ >Do S-mode batch correction
41
+ >==================CIBERSORTx===================
42
+ >Adjusting mixtures with S-mode batch correction.
43
+ >Running CIBERSORTx on unadjusted mixtures with S-mode adjusted signature matrix.
44
+ >=============CIBERSORTx Settings===============
45
+ >Mixture file: /src/data/mixture.txt
46
+ >Signature matrix file: /src/outdir//CIBERSORTx_sigmatrix_Adjusted.txt
47
+ >Enable verbose output
48
+ >==================CIBERSORTx===================
49
+ column B cell DC Monocyte NK cell Other T cell P-value Correlation RMSE %Completed
50
+ 1 0.0237946 0.0336395 0.217849 0.094045 0.134336 0.496336 9999 0.980392
51
+ 2 0.0465444 0.0312222 0.212418 0.112719 0.135812 0.461284 9999 1.96078
52
+ 3 0.0184401 0.114714 0.238427 0 0.0605188 0.5679 9999 2.94118
53
+ 4 0.0338807 0.00314397 0.490051 0.0832078 0.159887 0.229829 9999 3.92157
54
+ 5 0 0.318003 0.331648 0.0471981 0.0654486 0.237702 9999 4.90196
55
+ 6 0 0.0676242 0.253386 0 0.0705381 0.608451 9999 5.88235
56
+ 7 0.0368181 0.0785228 0.331355 0.0203744 0.0638151 0.469115 9999 6.86275
57
+ 8 0 0.102586 0.21923 0 0.155002 0.523181 9999 7.84314
58
+ 9 0.227799 0 0.32003 0.0214132 0.128626 0.302131 9999 8.82353
59
+ 10 0.0147025 0.0904519 0.394886 0 0.085477 0.414483 9999 9.80392
60
+ 11 0.0505832 0 0.243055 0.00093671 0.115857 0.589569 9999 10.7843
61
+ 12 0.0525615 0.0525193 0.477023 0.000207325 0.105241 0.312448 9999 11.7647
62
+ 13 0.0355918 0.110813 0.292369 0.00757943 0.0958093 0.457838 9999 12.7451
63
+ 14 0.00640267 0.0287325 0.676467 0.0265369 0.0821202 0.179741 9999 13.7255
64
+ 15 0.153063 0 0.432366 0 0.124885 0.289686 9999 14.7059
65
+ 16 0.0633592 0.00937479 0.306772 0 0.0860673 0.534427 9999 15.6863
66
+ 17 0.0382095 0 0.373665 0 0.0677776 0.520348 9999 16.6667
67
+ 18 0.137888 0 0.372014 0.059818 0.0945401 0.33574 9999 17.6471
68
+ 19 0.105807 0 0.179006 0 0.134817 0.58037 9999 18.6275
69
+ 20 0.145531 0.066394 0.23387 0 0.170925 0.383279 9999 19.6078
70
+ 21 0.107828 0.111357 0.464952 0 0.127695 0.188168 9999 20.5882
71
+ 22 0.111425 0 0.470366 0.0767933 0.118761 0.222654 9999 21.5686
72
+ 23 0.048332 0.0665664 0.556888 0.075675 0.0838969 0.168642 9999 22.549
73
+ 24 0.00147251 0.0900311 0.204469 0.0557333 0.0664535 0.581841 9999 23.5294
74
+ 25 0.122858 0 0.476607 0.031861 0.13705 0.231624 9999 24.5098
75
+ 26 0.0431607 0.00305961 0.462953 0.0386324 0.114685 0.337509 9999 25.4902
76
+ 27 0.0764367 0.136872 0.360395 0 0.0784878 0.347809 9999 26.4706
77
+ 28 0.0172258 0.092656 0.312337 0.036078 0.187601 0.354102 9999 27.451
78
+ 29 0.0585056 0.0674604 0.393058 0.00659556 0.139797 0.334584 9999 28.4314
79
+ 30 0.0710828 0 0.421928 0 0.106087 0.400902 9999 29.4118
80
+ 31 0.0900248 0.0491912 0.280485 0.0638197 0.218734 0.297745 9999 30.3922
81
+ 32 0.114791 0 0.353096 0.0616079 0.18496 0.285545 9999 31.3725
82
+ 33 0.127079 0.00484083 0.446202 0.0368338 0.129338 0.255706 9999 32.3529
83
+ 34 0.0794164 0 0.49696 0.0916406 0.133542 0.198441 9999 33.3333
84
+ 35 0.023759 0.112129 0.493922 0 0.0881582 0.282032 9999 34.3137
85
+ 36 0.0452755 0.1183 0.254841 0.0848256 0.06606 0.430698 9999 35.2941
86
+ 37 0.178277 0 0.280738 0 0.147622 0.393363 9999 36.2745
87
+ 38 0 0.103163 0.327586 0 0.0963116 0.472939 9999 37.2549
88
+ 39 0.0892607 0 0.303337 0 0.158088 0.449314 9999 38.2353
89
+ 40 0.065858 0.0218791 0.296664 0.0786698 0.104185 0.432744 9999 39.2157
90
+ 41 0.0620845 0.083872 0.216343 0.0565885 0.077494 0.503618 9999 40.1961
91
+ 42 0.0904254 0.130957 0.0429484 0.0215205 0.154394 0.559755 9999 41.1765
92
+ 43 0.0668607 0.00500536 0.193747 0.0159116 0.209047 0.509428 9999 42.1569
93
+ 44 0 0.112932 0.182006 0 0.0929874 0.612074 9999 43.1373
94
+ 45 0.0678022 0 0.226619 0 0.0963531 0.609226 9999 44.1176
95
+ 46 0.121554 0.0869279 0.114995 0 0.10351 0.573013 9999 45.098
96
+ 47 0.0999787 0.0145423 0.208931 0.0314332 0.0979737 0.547141 9999 46.0784
97
+ 48 0.0879545 0.0146541 0.279708 0 0.0851168 0.532567 9999 47.0588
98
+ 49 0.0437459 0.0640411 0.296487 0 0.13697 0.458756 9999 48.0392
99
+ 50 0.00950291 0.190694 0.144737 0.0907457 0.0525194 0.511801 9999 49.0196
100
+ 51 0.0103252 0.0512216 0.400776 0 0.0941539 0.443523 9999 50
101
+ 52 0.0172478 0.11723 0.314672 0.201359 0.029292 0.320199 9999 50.9804
102
+ 53 0.0415994 0.00732428 0.483152 0.0584243 0.107798 0.301702 9999 51.9608
103
+ 54 0.0304004 0.0578721 0.335915 0.150418 0.154725 0.27067 9999 52.9412
104
+ 55 0.0947309 0.21216 0.434249 0.0664786 0.128467 0.0639147 9999 53.9216
105
+ 56 0.0957411 0.0494782 0.221337 0.00528632 0.0911447 0.537013 9999 54.902
106
+ 57 0.0535046 0 0.280742 0 0.101123 0.56463 9999 55.8824
107
+ 58 0.0951922 0.0671779 0.25606 0.012597 0.148243 0.420729 9999 56.8627
108
+ 59 0.136157 0.0758548 0.230139 0 0.142275 0.415575 9999 57.8431
109
+ 60 0.0833404 0 0.407999 0.000137332 0.127795 0.380729 9999 58.8235
110
+ 61 0.135373 0.0332674 0.258749 0.102871 0.0823369 0.387402 9999 59.8039
111
+ 62 0.0609179 0.0560779 0.379536 0 0.0861248 0.417343 9999 60.7843
112
+ 63 0.0314582 0.149256 0.29056 0.122162 0.0435013 0.363063 9999 61.7647
113
+ 64 0.124187 0.0204492 0.23936 0.00636036 0.0844178 0.525225 9999 62.7451
114
+ 65 0.118379 0 0.236129 0.19715 0.115056 0.333286 9999 63.7255
115
+ 66 0.0595575 0.0135953 0.203463 0 0.134482 0.588902 9999 64.7059
116
+ 67 0.0942326 0.0149412 0.344903 0.00963257 0.152034 0.384257 9999 65.6863
117
+ 68 0.12823 0.145289 0.29192 0.0368792 0.100806 0.296876 9999 66.6667
118
+ 69 0.0448443 0.0862404 0.438593 0.118242 0.0308566 0.281224 9999 67.6471
119
+ 70 0.108493 0.12364 0.143099 0.121423 0.0698908 0.433455 9999 68.6275
120
+ 71 0.106943 0 0.365001 0.0376993 0.190374 0.299984 9999 69.6078
121
+ 72 0.13122 0.00384098 0.226034 0 0.202082 0.436823 9999 70.5882
122
+ 73 0.0103068 0.115983 0.234607 0 0.0928775 0.546225 9999 71.5686
123
+ 74 0.129118 0.0243347 0.226021 0 0.131058 0.489469 9999 72.549
124
+ 75 0.0609156 0.026051 0.421146 0 0.108264 0.383623 9999 73.5294
125
+ 76 0.0491433 0.122583 0.223854 0.0552169 0.0797615 0.469441 9999 74.5098
126
+ 77 0.103318 0 0.515889 0 0.116832 0.263961 9999 75.4902
127
+ 78 0.0638897 0.172163 0.303956 0.133096 0.0510887 0.275807 9999 76.4706
128
+ 79 0.0900793 0 0.371625 0 0.120906 0.41739 9999 77.451
129
+ 80 0.0309482 0.0781025 0.368978 0 0.144078 0.377893 9999 78.4314
130
+ 81 0.0225662 0.0909306 0.341851 0.0397246 0.115788 0.38914 9999 79.4118
131
+ 82 0.0405173 0.113616 0.295395 0 0.072372 0.478099 9999 80.3922
132
+ 83 0.0137172 0.0604737 0.367653 0 0.141095 0.41706 9999 81.3725
133
+ 84 0.129573 0 0.170561 0.141481 0.104395 0.453989 9999 82.3529
134
+ 85 0.101302 0 0.294485 0 0.0785963 0.525617 9999 83.3333
135
+ 86 0.0245584 0.0606403 0.165196 0 0.120965 0.628641 9999 84.3137
136
+ 87 0.111895 0.126045 0.189959 0 0.106503 0.465597 9999 85.2941
137
+ 88 0.0949942 0.100727 0.432554 0 0.134721 0.237003 9999 86.2745
138
+ 89 0.0571864 0 0.376285 0.0320949 0.225231 0.309203 9999 87.2549
139
+ 90 0.0711978 0.070855 0.566308 0.0690373 0.0772228 0.145379 9999 88.2353
140
+ 91 0.0409056 0 0.533678 0.00555243 0.109146 0.310718 9999 89.2157
141
+ 92 0.0231937 0.0173298 0.400277 0.0983982 0.0756794 0.385122 9999 90.1961
142
+ 93 0.121562 0.136647 0.310114 0 0.114026 0.317651 9999 91.1765
143
+ 94 0.108866 0.0177243 0.307117 0.0727855 0.104705 0.388802 9999 92.1569
144
+ 95 0.0700018 0.0306331 0.475 0.0379024 0.077124 0.309339 9999 93.1373
145
+ 96 0.119811 0 0.370845 0.0136803 0.156128 0.339534 9999 94.1176
146
+ 97 0.0557617 0.211709 0.461835 0.107626 0.0653654 0.0977031 9999 95.098
147
+ 98 0.0765906 0.0605865 0.159872 0 0.0691029 0.633848 9999 96.0784
148
+ 99 0.0928901 0.0424536 0.339202 0.0948055 0.154034 0.276615 9999 97.0588
149
+ 100 0.06845 0.0187871 0.388427 0 0.144947 0.379389 9999 98.0392
150
+ 101 0.182703 0.0608542 0.216305 0.0666335 0.0993377 0.374167 9999 99.0196
151
+ 102 0.113037 0.0582557 0.276272 0.0143074 0.036706 0.501422 9999 100
paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/cibersortx/immicro/fewshot1/out_fractions/.run.log ADDED
@@ -0,0 +1,151 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ >Running CIBERSORTxFractions...
2
+ >[Options] username: [REDACTED]
3
+ >[Options] token: [REDACTED]
4
+ >[Options] single_cell: TRUE
5
+ >[Options] refsample: refsample.txt
6
+ >[Options] mixture: mixture.txt
7
+ >[Options] rmbatchSmode: TRUE
8
+ >[Options] fraction: 0
9
+ >[Options] replicates: 5
10
+ >[Options] sampling: 0.5
11
+ >[Options] G.min: 300
12
+ >[Options] G.max: 500
13
+ >[Options] q.value: 0.01
14
+ >[Options] perm: 0
15
+ >[Options] QN: FALSE
16
+ >[Options] verbose: TRUE
17
+ >Making reference sample file.
18
+ >Making phenotype class file.
19
+ >==========Signature Matrix Settings============
20
+ >Pure samples file: /src/outdir//CIBERSORTx_refsample_inferred_refsample.txt
21
+ >Phenotype classes file: /src/outdir//CIBERSORTx_refsample_inferred_phenoclasses.txt
22
+ >Minimum number of DEGs to consider from each phenotype for signature matrix set to: 300
23
+ >Maximum number of DEGs to consider from each phenotype for signature matrix set to: 500
24
+ >Q-value for signature matrix construction set to: 0.01
25
+ >Quantile normalization of input samples is disabled
26
+ >===============================================
27
+ >C++14
28
+ >Loaded 30 columns and 16131 rows
29
+ >=============Make Signature Matrix=============
30
+ >Maximum condition number (kappa):999
31
+ >48965 DEG expressed across 6 samples were identified
32
+ >Group size: 498, Kappa: 27.2129219348014
33
+ >Best kappa: 27.2129219348014
34
+ >SVD UpperRightDiag: 41607.2
35
+ >SVD LowerRightDiag: 1528.95
36
+ >=============CIBERSORTx Settings===============
37
+ >Mixture file: /src/data/mixture.txt
38
+ >Signature matrix file: /src/outdir//CIBERSORTx_refsample_inferred_phenoclasses.CIBERSORTx_refsample_inferred_refsample.bm.K999.txt
39
+ >Enable verbose output
40
+ >Do S-mode batch correction
41
+ >==================CIBERSORTx===================
42
+ >Adjusting mixtures with S-mode batch correction.
43
+ >Running CIBERSORTx on unadjusted mixtures with S-mode adjusted signature matrix.
44
+ >=============CIBERSORTx Settings===============
45
+ >Mixture file: /src/data/mixture.txt
46
+ >Signature matrix file: /src/outdir//CIBERSORTx_sigmatrix_Adjusted.txt
47
+ >Enable verbose output
48
+ >==================CIBERSORTx===================
49
+ column B cell DC Monocyte NK cell Other T cell P-value Correlation RMSE %Completed
50
+ 1 0.0290006 0.029436 0.169992 0.134888 0.191842 0.444842 9999 0.980392
51
+ 2 0.0499553 0.0335549 0.175793 0.145043 0.141743 0.453911 9999 1.96078
52
+ 3 0.00276502 0.145077 0.193432 0 0.140522 0.518203 9999 2.94118
53
+ 4 0.027543 0.0471172 0.392959 0.115108 0.176074 0.2412 9999 3.92157
54
+ 5 0.0108287 0.32176 0.239356 0.0530889 0.13751 0.237456 9999 4.90196
55
+ 6 0.0091672 0.0492406 0.227948 0.0224932 0.127977 0.563173 9999 5.88235
56
+ 7 0.0505979 0.078067 0.256402 0.0617974 0.131887 0.421248 9999 6.86275
57
+ 8 0 0.0569206 0.217962 0 0.182243 0.542874 9999 7.84314
58
+ 9 0.218399 0.0311361 0.22395 0.0350473 0.184036 0.307432 9999 8.82353
59
+ 10 0 0.124865 0.332909 0.0178446 0.137051 0.38733 9999 9.80392
60
+ 11 0.053003 0 0.192955 0 0.14967 0.604372 9999 10.7843
61
+ 12 0.0432339 0.128444 0.216034 0.032291 0.162922 0.417076 9999 11.7647
62
+ 13 0.0175602 0.0482366 0.583842 0.049556 0.10948 0.191325 9999 12.7451
63
+ 14 0.0635477 0.0294984 0.238928 0 0.149452 0.518574 9999 13.7255
64
+ 15 0.0417473 0.01292 0.328509 0 0.0956145 0.521209 9999 14.7059
65
+ 16 0.141018 0.00778106 0.291898 0.0682033 0.152823 0.338277 9999 15.6863
66
+ 17 0.101726 0 0.169089 0 0.137018 0.592167 9999 16.6667
67
+ 18 0.161718 0.0638576 0.176806 0 0.220962 0.376656 9999 17.6471
68
+ 19 0.141348 0.0999085 0.375979 0.00685015 0.196266 0.179649 9999 18.6275
69
+ 20 0.103038 0.0158725 0.385019 0.0796728 0.15428 0.262117 9999 19.6078
70
+ 21 0.0346924 0.125618 0.450392 0.0690239 0.126238 0.194035 9999 20.5882
71
+ 22 0 0.0884299 0.167463 0.0814309 0.0967887 0.565887 9999 21.5686
72
+ 23 0.140516 0 0.193186 0.0554604 0.156717 0.454121 9999 22.549
73
+ 24 0.0980687 0 0.412754 0.0821843 0.109176 0.297817 9999 23.5294
74
+ 25 0.0725967 0 0.399225 0.0498043 0.148512 0.329862 9999 24.5098
75
+ 26 0.100702 0.161084 0.28212 0 0.11578 0.340314 9999 25.4902
76
+ 27 0.0345062 0.0627585 0.268937 0.095814 0.217604 0.320381 9999 26.4706
77
+ 28 0.0615035 0.106056 0.302459 0.00921137 0.148082 0.372688 9999 27.451
78
+ 29 0.0780841 0 0.352116 0.000574998 0.131956 0.437269 9999 28.4314
79
+ 30 0.0926211 0.0575025 0.235819 0.0722075 0.207093 0.334757 9999 29.4118
80
+ 31 0.106172 0 0.305777 0.111123 0.173807 0.30312 9999 30.3922
81
+ 32 0.137789 0.0384195 0.351635 0.0345998 0.177864 0.259692 9999 31.3725
82
+ 33 0.0746729 0.0473963 0.39041 0.112211 0.188756 0.186553 9999 32.3529
83
+ 34 0.0366713 0.10651 0.46615 0 0.142535 0.248134 9999 33.3333
84
+ 35 0.0494189 0.137426 0.194461 0.0929078 0.123077 0.402709 9999 34.3137
85
+ 36 0.172661 0 0.262361 0.0023523 0.169879 0.392748 9999 35.2941
86
+ 37 0.00554625 0.0761431 0.30166 0 0.141529 0.475122 9999 36.2745
87
+ 38 0.0737001 0 0.278224 0.0151893 0.149077 0.483809 9999 37.2549
88
+ 39 0.0607539 0.0273988 0.248305 0.0679369 0.116376 0.47923 9999 38.2353
89
+ 40 0.0994738 0.0336935 0.357609 0 0.115091 0.394132 9999 39.2157
90
+ 41 0.0725502 0.0744056 0.162444 0.0982309 0.135129 0.457241 9999 40.1961
91
+ 42 0.0922297 0.131066 0.025093 0.0615372 0.165168 0.524906 9999 41.1765
92
+ 43 0.0681954 0.00500581 0.153652 0.0434289 0.177276 0.552442 9999 42.1569
93
+ 44 0.0004736 0.0831966 0.178576 0.029294 0.110927 0.597533 9999 43.1373
94
+ 45 0.0654214 0.00649025 0.186793 0.0156891 0.170901 0.554705 9999 44.1176
95
+ 46 0.128202 0.105641 0.0743734 0 0.180868 0.510915 9999 45.098
96
+ 47 0.102156 0.0343265 0.174311 0.0579245 0.101403 0.529878 9999 46.0784
97
+ 48 0.087319 0.0447868 0.221774 0 0.103186 0.542934 9999 47.0588
98
+ 49 0.0788164 0.023216 0.0798098 0 0.147716 0.670442 9999 48.0392
99
+ 50 0.0609232 0.0804737 0.24515 0 0.129142 0.484311 9999 49.0196
100
+ 51 0.0261507 0.165148 0.142149 0.179272 0.07999 0.40729 9999 50
101
+ 52 0.0244383 0.0483126 0.346599 0 0.124151 0.4565 9999 50.9804
102
+ 53 0.0528118 0.0246433 0.37949 0.073279 0.182667 0.287109 9999 51.9608
103
+ 54 0.0426048 0.0523603 0.28569 0.149168 0.16346 0.306717 9999 52.9412
104
+ 55 0.0854869 0.254581 0.351574 0.0685393 0.109437 0.130382 9999 53.9216
105
+ 56 0.073077 0.0625018 0.193382 0.0338802 0.122527 0.514633 9999 54.902
106
+ 57 0.0789855 0 0.265932 0.0117839 0.123016 0.520282 9999 55.8824
107
+ 58 0.0826216 0.103545 0.183856 0 0.197063 0.432914 9999 56.8627
108
+ 59 0.142352 0.0460944 0.218988 0.00134836 0.186133 0.405084 9999 57.8431
109
+ 60 0.0810415 0.00606017 0.362742 0.00823791 0.157846 0.384073 9999 58.8235
110
+ 61 0.121526 0.067467 0.220291 0.0896045 0.112657 0.388454 9999 59.8039
111
+ 62 0.0651621 0.0761026 0.312138 0 0.137705 0.408892 9999 60.7843
112
+ 63 0.031555 0.131437 0.266034 0.117686 0.0859627 0.367325 9999 61.7647
113
+ 64 0.103499 0.0277961 0.169361 0.202057 0.140659 0.356628 9999 62.7451
114
+ 65 0.0601356 0.0175118 0.178324 0 0.185891 0.558137 9999 63.7255
115
+ 66 0.0679445 0.140233 0.128205 0.444739 0.00207982 0.216798 9999 64.7059
116
+ 67 0.0955211 0.0273357 0.183159 0.0871285 0.152983 0.453872 9999 65.6863
117
+ 68 0.101002 0.0269273 0.27835 0.00928289 0.178757 0.40568 9999 66.6667
118
+ 69 0.140074 0.107452 0.258474 0.0592966 0.187538 0.247164 9999 67.6471
119
+ 70 0.129044 0.0925855 0.119843 0.15742 0.102037 0.39907 9999 68.6275
120
+ 71 0.0996257 0 0.287076 0.0596442 0.195553 0.358101 9999 69.6078
121
+ 72 0.122922 0.0105889 0.194997 0 0.22982 0.441672 9999 70.5882
122
+ 73 0.0195415 0.109468 0.195027 0 0.127161 0.548802 9999 71.5686
123
+ 74 0.125607 0 0.218989 0 0.176648 0.478757 9999 72.549
124
+ 75 0.0649183 0.0467324 0.338514 0 0.137652 0.412183 9999 73.5294
125
+ 76 0.0594103 0.114986 0.184029 0.0642382 0.101163 0.476175 9999 74.5098
126
+ 77 0.101365 0.0119163 0.446619 0.00290998 0.155755 0.281434 9999 75.4902
127
+ 78 0.0617607 0.198417 0.237297 0.146227 0.0642541 0.292044 9999 76.4706
128
+ 79 0.0696105 0.000106648 0.336725 0.00166624 0.109616 0.482276 9999 77.451
129
+ 80 0.018575 0.111884 0.271654 0.0433453 0.185891 0.36865 9999 78.4314
130
+ 81 0.0287565 0.0754298 0.317845 0.0596395 0.163586 0.354744 9999 79.4118
131
+ 82 0.0454594 0.0954696 0.263278 0 0.155855 0.439938 9999 80.3922
132
+ 83 0.0288276 0.0683959 0.314834 0.01993 0.153786 0.414227 9999 81.3725
133
+ 84 0.128319 0 0.159067 0.133867 0.133145 0.445602 9999 82.3529
134
+ 85 0.104245 0.0167257 0.252303 0 0.0815992 0.545127 9999 83.3333
135
+ 86 0.0290303 0.0530018 0.130647 0 0.174667 0.612654 9999 84.3137
136
+ 87 0.132709 0.0998887 0.160825 0.00791467 0.15578 0.442883 9999 85.2941
137
+ 88 0.120126 0.100255 0.359674 0.000678537 0.242494 0.176773 9999 86.2745
138
+ 89 0.0406636 0.0341654 0.288114 0.0385882 0.236276 0.362193 9999 87.2549
139
+ 90 0.0807553 0.0733633 0.445403 0.0769817 0.180182 0.143315 9999 88.2353
140
+ 91 0.0143912 0.0192435 0.469524 0.0208965 0.138069 0.337876 9999 89.2157
141
+ 92 0.0167161 0.0250144 0.361109 0.135755 0.108334 0.353071 9999 90.1961
142
+ 93 0.16559 0.0954122 0.258089 0 0.21835 0.262558 9999 91.1765
143
+ 94 0.109665 0.00986608 0.269713 0.0940024 0.178047 0.338706 9999 92.1569
144
+ 95 0.0782713 0.0566054 0.399215 0.0505085 0.0981142 0.317286 9999 93.1373
145
+ 96 0.11671 0 0.298638 0.020535 0.209225 0.354892 9999 94.1176
146
+ 97 0.113356 0.165206 0.375861 0.145747 0.153633 0.0461973 9999 95.098
147
+ 98 0.100678 0.0469507 0.156069 0 0.0721464 0.624156 9999 96.0784
148
+ 99 0.110061 0.0571746 0.292435 0.155049 0.141608 0.243672 9999 97.0588
149
+ 100 0.0725408 0.0521747 0.32474 0 0.207102 0.343443 9999 98.0392
150
+ 101 0.216559 0.0449805 0.160745 0.0961036 0.15711 0.324502 9999 99.0196
151
+ 102 0.103932 0.0713152 0.242323 0.0318759 0.0859449 0.464608 9999 100
paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/cibersortx/immicro/fewshot2/out_fractions/.run.log ADDED
@@ -0,0 +1,151 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ >Running CIBERSORTxFractions...
2
+ >[Options] username: [REDACTED]
3
+ >[Options] token: [REDACTED]
4
+ >[Options] single_cell: TRUE
5
+ >[Options] refsample: refsample.txt
6
+ >[Options] mixture: mixture.txt
7
+ >[Options] rmbatchSmode: TRUE
8
+ >[Options] fraction: 0
9
+ >[Options] replicates: 5
10
+ >[Options] sampling: 0.5
11
+ >[Options] G.min: 300
12
+ >[Options] G.max: 500
13
+ >[Options] q.value: 0.01
14
+ >[Options] perm: 0
15
+ >[Options] QN: FALSE
16
+ >[Options] verbose: TRUE
17
+ >Making reference sample file.
18
+ >Making phenotype class file.
19
+ >==========Signature Matrix Settings============
20
+ >Pure samples file: /src/outdir//CIBERSORTx_refsample_inferred_refsample.txt
21
+ >Phenotype classes file: /src/outdir//CIBERSORTx_refsample_inferred_phenoclasses.txt
22
+ >Minimum number of DEGs to consider from each phenotype for signature matrix set to: 300
23
+ >Maximum number of DEGs to consider from each phenotype for signature matrix set to: 500
24
+ >Q-value for signature matrix construction set to: 0.01
25
+ >Quantile normalization of input samples is disabled
26
+ >===============================================
27
+ >C++14
28
+ >Loaded 30 columns and 16131 rows
29
+ >=============Make Signature Matrix=============
30
+ >Maximum condition number (kappa):999
31
+ >48287 DEG expressed across 6 samples were identified
32
+ >Group size: 446, Kappa: 24.0880688158891
33
+ >Best kappa: 24.0880688158891
34
+ >SVD UpperRightDiag: 37570.6
35
+ >SVD LowerRightDiag: 1559.72
36
+ >=============CIBERSORTx Settings===============
37
+ >Mixture file: /src/data/mixture.txt
38
+ >Signature matrix file: /src/outdir//CIBERSORTx_refsample_inferred_phenoclasses.CIBERSORTx_refsample_inferred_refsample.bm.K999.txt
39
+ >Enable verbose output
40
+ >Do S-mode batch correction
41
+ >==================CIBERSORTx===================
42
+ >Adjusting mixtures with S-mode batch correction.
43
+ >Running CIBERSORTx on unadjusted mixtures with S-mode adjusted signature matrix.
44
+ >=============CIBERSORTx Settings===============
45
+ >Mixture file: /src/data/mixture.txt
46
+ >Signature matrix file: /src/outdir//CIBERSORTx_sigmatrix_Adjusted.txt
47
+ >Enable verbose output
48
+ >==================CIBERSORTx===================
49
+ column B cell DC Monocyte NK cell Other T cell P-value Correlation RMSE %Completed
50
+ 1 0.0738676 0 0.25323 0.188653 0.0641717 0.420078 9999 0.980392
51
+ 2 0.0614608 0.0201246 0.231338 0.163677 0.102643 0.420757 9999 1.96078
52
+ 3 0.0301324 0.0936276 0.297601 0.00549205 0.0612606 0.511886 9999 2.94118
53
+ 4 0.0362555 0.010375 0.513861 0.107277 0.0648089 0.267422 9999 3.92157
54
+ 5 0.0756671 0.243974 0.320121 0.0625045 0.114156 0.183577 9999 4.90196
55
+ 6 0.0306733 0.0319191 0.276106 0.0178523 0.0264268 0.617023 9999 5.88235
56
+ 7 0.0808125 0.0270155 0.353277 0.0818867 0.0380659 0.418942 9999 6.86275
57
+ 8 0 0.0676317 0.27365 0 0.147862 0.510856 9999 7.84314
58
+ 9 0.231094 0 0.334942 0.0358062 0.0631038 0.335054 9999 8.82353
59
+ 10 0.0296927 0.0817312 0.414889 0.0286477 0.0823554 0.362683 9999 9.80392
60
+ 11 0.0730132 0 0.253231 0.0003457 0.104177 0.569233 9999 10.7843
61
+ 12 0.0722742 0.0526013 0.460716 0 0.0776657 0.336743 9999 11.7647
62
+ 13 0.0535058 0.0890296 0.317559 0.0417887 0.109546 0.388571 9999 12.7451
63
+ 14 0.0203139 0.0184619 0.686661 0.0340479 0.052162 0.188354 9999 13.7255
64
+ 15 0.165934 0 0.438719 0 0.0916144 0.303733 9999 14.7059
65
+ 16 0.0801034 0.0145511 0.316279 0 0.0682545 0.520812 9999 15.6863
66
+ 17 0.0437049 0 0.417886 0 0.0577227 0.480686 9999 16.6667
67
+ 18 0.168209 0 0.360724 0.0748498 0.0677671 0.32845 9999 17.6471
68
+ 19 0.141848 0 0.204751 0.00796814 0.101033 0.544399 9999 18.6275
69
+ 20 0.163418 0.0593928 0.243115 0 0.143998 0.390076 9999 19.6078
70
+ 21 0.145103 0.084055 0.461405 0.00607277 0.108083 0.195282 9999 20.5882
71
+ 22 0.11849 0 0.467527 0.0848026 0.0812635 0.247917 9999 21.5686
72
+ 23 0.00886251 0.0733643 0.224832 0.112458 0.055074 0.525408 9999 22.549
73
+ 24 0.160785 0 0.254869 0.0453438 0.0638386 0.475164 9999 23.5294
74
+ 25 0.123076 0 0.482757 0.0574833 0.0801382 0.256546 9999 24.5098
75
+ 26 0.0823205 0 0.452141 0.040673 0.10259 0.322276 9999 25.4902
76
+ 27 0.0993781 0.109022 0.399185 0 0.0620175 0.330397 9999 26.4706
77
+ 28 0.0451985 0.0533337 0.359173 0.0651043 0.169997 0.307193 9999 27.451
78
+ 29 0.104296 0.0550208 0.368687 0.028934 0.0943645 0.348697 9999 28.4314
79
+ 30 0.0796303 0 0.459451 0 0.0693307 0.391588 9999 29.4118
80
+ 31 0.0936575 0.0459748 0.302584 0.0951902 0.169924 0.29267 9999 30.3922
81
+ 32 0.119049 0 0.360513 0.0873137 0.118191 0.314932 9999 31.3725
82
+ 33 0.139465 0 0.459755 0.0454665 0.134992 0.220322 9999 32.3529
83
+ 34 0.0799208 0.0100564 0.514512 0.0961962 0.0671634 0.232151 9999 33.3333
84
+ 35 0.0570096 0.0755358 0.534206 0 0.061407 0.271842 9999 34.3137
85
+ 36 0.0686819 0.101503 0.283355 0.129482 0.0270239 0.389953 9999 35.2941
86
+ 37 0.194075 0 0.311441 0 0.0509013 0.443582 9999 36.2745
87
+ 38 0.0188546 0.0706545 0.367002 0 0.0858795 0.45761 9999 37.2549
88
+ 39 0.0961908 0 0.33016 0.0191317 0.0904147 0.464103 9999 38.2353
89
+ 40 0.10443 0.0196211 0.442664 0.00307884 0.0321251 0.398081 9999 39.2157
90
+ 41 0.107885 0 0.296834 0.167186 0.0120046 0.41609 9999 40.1961
91
+ 42 0.118388 0.106621 0.0803447 0.0661997 0.117449 0.510998 9999 41.1765
92
+ 43 0 0.0991991 0.234587 0 0.0682313 0.597983 9999 42.1569
93
+ 44 0.0976667 0 0.238575 0.0268784 0.0747926 0.562087 9999 43.1373
94
+ 45 0.152437 0.0619873 0.164181 0 0.11242 0.508974 9999 44.1176
95
+ 46 0.103539 0.0231496 0.234124 0.086621 0.0559069 0.496659 9999 45.098
96
+ 47 0.11761 0.00960081 0.297768 0 0.0755384 0.499483 9999 46.0784
97
+ 48 0.094256 0.00178978 0.109007 0 0.0976906 0.697256 9999 47.0588
98
+ 49 0.0406658 0.151127 0.172024 0.161678 0.008356 0.466148 9999 48.0392
99
+ 50 0.024097 0.0288504 0.457104 0 0.0508542 0.439094 9999 49.0196
100
+ 51 0.0357614 0.0907247 0.32202 0.192394 0.0552644 0.303836 9999 50
101
+ 52 0.0723548 0 0.44088 0.0797733 0.132647 0.274346 9999 50.9804
102
+ 53 0.0567095 0.0400531 0.334423 0.161219 0.119406 0.288189 9999 51.9608
103
+ 54 0.108958 0.195377 0.444374 0.071946 0.112936 0.0664089 9999 52.9412
104
+ 55 0.112811 0.0298088 0.259634 0.0483532 0.0738039 0.475589 9999 53.9216
105
+ 56 0.119489 0 0.310303 0 0.101659 0.468549 9999 54.902
106
+ 57 0.134704 0.0391466 0.293005 0 0.0950677 0.438077 9999 55.8824
107
+ 58 0.167266 0.0465264 0.264027 0 0.146944 0.375237 9999 56.8627
108
+ 59 0.100111 0 0.432638 0.00870564 0.131247 0.327299 9999 57.8431
109
+ 60 0.140103 0.0264565 0.282449 0.115307 0.0788429 0.356841 9999 58.8235
110
+ 61 0.0798477 0.0518536 0.387399 0 0.0891198 0.39178 9999 59.8039
111
+ 62 0.0527009 0.130443 0.298418 0.142579 0.0267184 0.34914 9999 60.7843
112
+ 63 0.138173 0.0221815 0.270056 0.0536145 0.0600502 0.455925 9999 61.7647
113
+ 64 0.128821 0 0.245204 0.239521 0.0544824 0.331972 9999 62.7451
114
+ 65 0.0709016 0 0.244381 0 0.109505 0.575212 9999 63.7255
115
+ 66 0.0983559 0.103118 0.157882 0.454963 0.0232309 0.162451 9999 64.7059
116
+ 67 0.147338 0 0.230607 0.0909984 0.112083 0.418974 9999 65.6863
117
+ 68 0.136537 0 0.338528 0.0242275 0.109132 0.391577 9999 66.6667
118
+ 69 0.145331 0.0911131 0.347289 0.0569604 0.106646 0.25266 9999 67.6471
119
+ 70 0.0572568 0.0529086 0.464485 0.118704 0.0324054 0.274239 9999 68.6275
120
+ 71 0.165028 0.0567349 0.16587 0.179861 0.0899755 0.34253 9999 69.6078
121
+ 72 0.1066 0 0.371841 0.06661 0.135413 0.319537 9999 70.5882
122
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