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1
junidude14 commited on
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1 Parent(s): 592efd9

Archive 4 checkpoints (1-4)

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Files changed (4) hide show
  1. paper-releases/pbisc-diffusion/updates/20261004T165054Z-rare-states-screen/diffusion/dataset/server_1/model8/plans/rare_states_screen_20261004/out/summary.csv +46 -0
  2. paper-releases/pbisc-diffusion/updates/20261004T165054Z-rare-states-screen/diffusion/dataset/server_1/model8/plans/rare_states_screen_20261004/out/v1_provisional_markers/contrasts.csv +61 -0
  3. paper-releases/pbisc-diffusion/updates/20261004T165054Z-rare-states-screen/diffusion/dataset/server_1/model8/plans/rare_states_screen_20261004/out/v1_provisional_markers/corpus_states.csv +265 -0
  4. paper-releases/pbisc-diffusion/updates/20261004T165054Z-rare-states-screen/diffusion/dataset/server_1/model8/plans/rare_states_screen_20261004/out/v1_provisional_markers/corpus_stdout.txt +45 -0
paper-releases/pbisc-diffusion/updates/20261004T165054Z-rare-states-screen/diffusion/dataset/server_1/model8/plans/rare_states_screen_20261004/out/summary.csv ADDED
@@ -0,0 +1,46 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ dataset,state,rule,k,thin,gen,obs_thinned,obs_native_n,gen_pct,obs_pct,gen_over_obs,spearman
2
+ dress,C1Q-high monocyte (reference),>= 2 of C1QA C1QB C1QC / ['Monocyte'],2,0.607,"110 / 3,793","529 / 4,485",586,2.9000790930661746,11.794871794871796,0.24587627093387132,0.9642857142857145
3
+ dress,Cycling T/NK,">= 2 of MKI67 TOP2A TYMS CENPF UBE2C BIRC5 / ['T cell', 'NK cell']",2,1.0,"455 / 28,601","1,295 / 26,235",1295,1.590853466662005,4.936153992757767,0.3222860285550401,0.7748062179181807
4
+ dress,Cycling activated T (CD38/HLA-DR),>= 1 of MKI67 TOP2A TYMS CENPF UBE2C BIRC5; any of CD38 HLA-DRA HLA-DRB1 / ['T cell'],1,1.0,"424 / 27,578","1,929 / 24,482",1929,1.5374573935745885,7.8792582305367205,0.1951271742327272,0.8571428571428573
5
+ dress,Proliferating T (label),AIFI L2 in ['Proliferating T cell'] / ['T cell'],,1.0,"1,001 / 27,578","4,226 / 24,482",4226,3.6297048371890637,17.261661628951884,0.2102755178042183,0.642857142857143
6
+ dress,Plasmablast (label),AIFI L2 in ['Plasma cell'] / ['ALL'],,1.0,"76 / 35,000","187 / 33,712",187,0.21714285714285714,0.5546986236355007,0.39146096256684493,0.5714285714285715
7
+ dress,Plasmablast (markers),>= 3 of JCHAIN MZB1 TNFRSF17 TXNDC5 PRDM1 IRF4 IGLL5 / ['ALL'],3,0.967,"108 / 35,000","529 / 33,712",549,0.30857142857142855,1.5691741813004272,0.19664574669187143,0.6071428571428572
8
+ dress,MS1 monocyte (IL1R2+),>= 2 of RETN ALOX5AP CYP1B1 MCEMP1 PLAC8 CLU CD163; any of IL1R2 / ['Monocyte'],2,0.607,"68 / 3,793","58 / 4,485",110,1.792776166622726,1.2931995540691192,1.386310535741884,0.594618725379069
9
+ dress,Cycling monocyte (Ye 2026),>= 1 of MKI67 TOP2A TYMS CENPF UBE2C BIRC5 / ['Monocyte'],1,0.607,"12 / 3,793","126 / 4,485",196,0.3163722646981281,2.809364548494983,0.11261346088659561,0.48181205582971587
10
+ dress,ISG-high monocyte (positive control),>= 4 of ISG15 IFI6 IFI27 IFI44L MX1 OAS1 IFIT1 IFIT3 RSAD2 SIGLEC1 / ['Monocyte'],4,0.607,"35 / 3,793","212 / 4,485",394,0.9227524387028737,4.7268673355629875,0.19521437205577305,0.2882999880625789
11
+ dress,ISG-high T,>= 4 of ISG15 IFI6 IFI27 IFI44L MX1 OAS1 IFIT1 IFIT3 RSAD2 SIGLEC1 / ['T cell'],4,1.0,"31 / 27,578","318 / 24,482",318,0.11240844151134963,1.2989134874601749,0.08654036053713401,1.0
12
+ dress,DN2 / ABC B,>= 2 of ITGAX TBX21 FCRL5 FGR TFEC SOX5 ZEB2; any of ITGAX TBX21; none of CR2 / ['B cell'],2,0.887,"23 / 1,938","89 / 2,245",98,1.1867905056759547,3.964365256124722,0.2993645713755638,0.28571428571428575
13
+ dress,HSPC,>= 2 of CD34 PRSS57 SPINK2 SMIM24 / ['ALL'],2,0.967,"11 / 35,000","33 / 33,712",33,0.03142857142857143,0.09788799240626483,0.32106666666666667,0.6174969805662239
14
+ dress,Cytotoxic CD4 T,">= 3 of GZMH GZMB GZMA PRF1 NKG7 GNLY FGFBP2 CX3CR1 ZNF683; none of CCR7 / ['Naive CD4 T cell', 'Memory CD4 T cell', 'Treg']",3,1.0,"61 / 17,909","19 / 12,541",19,0.3406108660450053,0.15150306993062754,2.248210984773901,0.1785714285714286
15
+ dress,Granulocyte-like (LDG),>= 2 of ELANE MPO CTSG CAMP LCN2 MMP9 CSF3R CXCR2 FCGR3B / ['ALL'],2,0.967,"78 / 35,000","865 / 33,712",899,0.22285714285714286,2.5658519221642146,0.0868550289017341,0.7041868508280462
16
+ dress,Platelet signal in monocytes (negative control),>= 2 of PPBP PF4 TUBB1 GP9 NRGN / ['Monocyte'],2,0.607,"18 / 3,793","53 / 4,485",90,0.4745583970471922,1.1817168338907469,0.40158385108616174,0.24851336640235752
17
+ kawasaki,C1Q-high monocyte (reference),>= 2 of C1QA C1QB C1QC / ['Monocyte'],2,1.0,"43 / 7,927","603 / 11,050",603,0.5424498549262016,5.457013574660634,0.09940416081151786,0.17297999283754734
18
+ kawasaki,Cycling T/NK,">= 2 of MKI67 TOP2A TYMS CENPF UBE2C BIRC5 / ['T cell', 'NK cell']",2,1.0,"92 / 45,425","1,163 / 63,360",1163,0.20253164556962025,1.8355429292929293,0.11033882255624368,0.33928571428571425
19
+ kawasaki,Cycling activated T (CD38/HLA-DR),>= 1 of MKI67 TOP2A TYMS CENPF UBE2C BIRC5; any of CD38 HLA-DRA HLA-DRB1 / ['T cell'],1,1.0,"94 / 42,408","1,880 / 57,032",1880,0.22165629126579892,3.296395006312246,0.06724202980569705,0.5035714285714286
20
+ kawasaki,Proliferating T (label),AIFI L2 in ['Proliferating T cell'] / ['T cell'],,1.0,"330 / 42,408","1,146 / 57,032",1146,0.77815506508206,2.009398232571188,0.38725776327888345,0.1928571428571428
21
+ kawasaki,Plasmablast (label),AIFI L2 in ['Plasma cell'] / ['ALL'],,1.0,"206 / 75,000","1,837 / 103,362",1837,0.27466666666666667,1.7772488922427971,0.15454597713663581,0.5583563931615944
22
+ kawasaki,Plasmablast (markers),>= 3 of JCHAIN MZB1 TNFRSF17 TXNDC5 PRDM1 IRF4 IGLL5 / ['ALL'],3,1.0,"403 / 75,000","6,780 / 103,362",6780,0.5373333333333333,6.559470598479131,0.08191717994100295,0.6214285714285712
23
+ kawasaki,MS1 monocyte (IL1R2+),>= 2 of RETN ALOX5AP CYP1B1 MCEMP1 PLAC8 CLU CD163; any of IL1R2 / ['Monocyte'],2,1.0,"345 / 7,927","714 / 11,050",714,4.352213952314873,6.461538461538462,0.6735569211915875,0.5481481481481483
24
+ kawasaki,Cycling monocyte (Ye 2026),>= 1 of MKI67 TOP2A TYMS CENPF UBE2C BIRC5 / ['Monocyte'],1,1.0,"15 / 7,927","366 / 11,050",366,0.18922669357890753,3.3122171945701355,0.057129917050462525,0.0063786488334384335
25
+ kawasaki,ISG-high monocyte (positive control),>= 4 of ISG15 IFI6 IFI27 IFI44L MX1 OAS1 IFIT1 IFIT3 RSAD2 SIGLEC1 / ['Monocyte'],4,1.0,"445 / 7,927","2,811 / 11,050",2811,5.613725242840923,25.43891402714932,0.2206747205029961,0.21071428571428572
26
+ kawasaki,ISG-high T,>= 4 of ISG15 IFI6 IFI27 IFI44L MX1 OAS1 IFIT1 IFIT3 RSAD2 SIGLEC1 / ['T cell'],4,1.0,"161 / 42,408","2,361 / 57,032",2361,0.3796453499339747,4.139781175480432,0.09170662260666855,0.6344126772183988
27
+ kawasaki,DN2 / ABC B,>= 2 of ITGAX TBX21 FCRL5 FGR TFEC SOX5 ZEB2; any of ITGAX TBX21; none of CR2 / ['B cell'],2,1.0,"149 / 20,998","413 / 21,517",413,0.7095913896561578,1.9194125575126644,0.36969195959398415,-0.0857142857142857
28
+ kawasaki,HSPC,>= 2 of CD34 PRSS57 SPINK2 SMIM24 / ['ALL'],2,1.0,"48 / 75,000","124 / 103,362",124,0.064,0.1199667189102378,0.5334812903225806,0.7353713953215716
29
+ kawasaki,Cytotoxic CD4 T,">= 3 of GZMH GZMB GZMA PRF1 NKG7 GNLY FGFBP2 CX3CR1 ZNF683; none of CCR7 / ['Naive CD4 T cell', 'Memory CD4 T cell', 'Treg']",3,1.0,"153 / 26,586","147 / 28,856",147,0.5754908598510494,0.5094261158857777,1.1296846429838014,0.2821428571428571
30
+ kawasaki,Granulocyte-like (LDG),>= 2 of ELANE MPO CTSG CAMP LCN2 MMP9 CSF3R CXCR2 FCGR3B / ['ALL'],2,1.0,"16 / 75,000","2,974 / 103,362",2974,0.021333333333333333,2.87726630676651,0.0074144451916610616,0.8459389534565116
31
+ kawasaki,Platelet signal in monocytes (negative control),>= 2 of PPBP PF4 TUBB1 GP9 NRGN / ['Monocyte'],2,1.0,"98 / 7,927","869 / 11,050",869,1.2362810647155291,7.864253393665158,0.1572025979874177,0.2928571428571428
32
+ sle,C1Q-high monocyte (reference),>= 2 of C1QA C1QB C1QC / ['Monocyte'],2,0.957,"109 / 21,833","1,800 / 70,901",1823,0.499244263271195,2.538751216484958,0.1966495417232833,0.425667845115014
33
+ sle,Cycling T/NK,">= 2 of MKI67 TOP2A TYMS CENPF UBE2C BIRC5 / ['T cell', 'NK cell']",2,1.0,"688 / 124,845","1,553 / 238,992",1553,0.5510833433457487,0.6498125460266453,0.8480651023366849,0.6781051352229641
34
+ sle,Cycling activated T (CD38/HLA-DR),>= 1 of MKI67 TOP2A TYMS CENPF UBE2C BIRC5; any of CD38 HLA-DRA HLA-DRB1 / ['T cell'],1,1.0,"399 / 106,521","3,133 / 216,491",3133,0.3745740276565184,1.447173323602367,0.2588314900140036,0.5743050689676349
35
+ sle,Proliferating T (label),AIFI L2 in ['Proliferating T cell'] / ['T cell'],,1.0,"561 / 106,521","1,953 / 216,491",1953,0.5266567155772102,0.9021160232988901,0.5838015310395587,0.670138401025515
36
+ sle,Plasmablast (label),AIFI L2 in ['Plasma cell'] / ['ALL'],,1.0,"85 / 168,000","1,526 / 358,235",1526,0.050595238095238096,0.42597736122936064,0.11877447653373276,0.19002519863132827
37
+ sle,Plasmablast (markers),>= 3 of MZB1 TNFRSF17 TXNDC5 PRDM1 IRF4 IGLL5 / ['ALL'],3,1.0,"92 / 168,000","3,250 / 358,235",3250,0.05476190476190476,0.9072257037977863,0.06036194139194139,0.3065829661916507
38
+ sle,MS1 monocyte (IL1R2+),>= 2 of RETN ALOX5AP CYP1B1 PLAC8 CLU CD163; any of IL1R2 / ['Monocyte'],2,0.957,"21 / 21,833","3,105 / 70,901",3231,0.09618467457518436,4.379345848436552,0.02196325156861561,-0.0305602311890414
39
+ sle,Cycling monocyte (Ye 2026),>= 1 of MKI67 TOP2A TYMS CENPF UBE2C BIRC5 / ['Monocyte'],1,0.957,"7 / 21,833","1,200 / 70,901",1254,0.032061558191728116,1.692500810989972,0.01894330447793096,0.2579767941753155
40
+ sle,ISG-high monocyte (positive control),>= 4 of ISG15 IFI6 IFI27 IFI44L MX1 OAS1 IFIT1 IFIT3 RSAD2 SIGLEC1 / ['Monocyte'],4,0.957,"7,372 / 21,833","27,715 / 70,901",28332,33.76540099848852,39.089716647155896,0.8637924215023758,0.8613807245386194
41
+ sle,ISG-high T,>= 4 of ISG15 IFI6 IFI27 IFI44L MX1 OAS1 IFIT1 IFIT3 RSAD2 SIGLEC1 / ['T cell'],4,1.0,"5,819 / 106,521","26,345 / 216,491",26345,5.462772598830278,12.169097098724658,0.44890533410262506,0.8551606288448395
42
+ sle,DN2 / ABC B,>= 2 of ITGAX TBX21 FCRL5 FGR TFEC SOX5 ZEB2; any of ITGAX TBX21; none of CR2 / ['B cell'],2,1.0,"40 / 19,311","931 / 35,488",931,0.20713582932007665,2.6234220018034264,0.07895635135242621,0.0345260411415992
43
+ sle,HSPC,>= 2 of CD34 PRSS57 SPINK2 / ['ALL'],2,1.0,"12 / 168,000","265 / 358,235",265,0.007142857142857143,0.07397378815581951,0.09655929919137465,0.12655872224310263
44
+ sle,Cytotoxic CD4 T,">= 3 of GZMH GZMB GZMA PRF1 NKG7 GNLY FGFBP2 CX3CR1 ZNF683; none of CCR7 / ['Naive CD4 T cell', 'Memory CD4 T cell', 'Treg']",3,1.0,"791 / 71,556","1,855 / 106,194",1855,1.1054279165967913,1.7468030208863023,0.632829176145982,0.650079461466437
45
+ sle,Granulocyte-like (LDG),>= 2 of ELANE MPO CTSG CAMP LCN2 MMP9 CSF3R CXCR2 FCGR3B / ['ALL'],2,1.0,"17 / 168,000","2,697 / 358,235",2697,0.01011904761904762,0.752857760966963,0.013440849179864755,0.2563692618620108
46
+ sle,Platelet signal in monocytes (negative control),>= 2 of PPBP PF4 TUBB1 GP9 NRGN / ['Monocyte'],2,0.957,"403 / 21,833","3,639 / 70,901",3788,1.845829707323776,5.13250870932709,0.3596349878509564,0.047609320138292235
paper-releases/pbisc-diffusion/updates/20261004T165054Z-rare-states-screen/diffusion/dataset/server_1/model8/plans/rare_states_screen_20261004/out/v1_provisional_markers/contrasts.csv ADDED
@@ -0,0 +1,61 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ dataset,state,contrast,obs_a,obs_b,gen_a,gen_b,obs_a_counts,obs_b_counts,gen_a_counts,gen_b_counts,obs_diff,gen_diff,same_direction
2
+ dress,C1Q-high monocyte (reference),DRESS|none - healthy|none,3.8184438040345823,1.641867624422781,2.127659574468085,0.9581881533101045,53 / 1388,32 / 1949,15 / 705,11 / 1148,2.1765761796118013,1.1694714211579806,True
3
+ dress,Plasmablast (label),DRESS|none - healthy|none,0.5663856691253951,0.02328830926874709,0.24,0.04,43 / 7592,2 / 8588,12 / 5000,2 / 5000,0.543097359856648,0.19999999999999998,True
4
+ dress,Plasmablast (markers),DRESS|none - healthy|none,12.8,1.8099547511312217,4.601226993865031,0.6116207951070336,48 / 375,12 / 663,15 / 326,2 / 327,10.990045248868778,3.989606198757997,True
5
+ dress,Progenitor (label),DRESS|none - healthy|none,0.07903055848261328,0.12808570097810898,0.14,0.06,6 / 7592,11 / 8588,7 / 5000,3 / 5000,-0.049055142495495696,0.08000000000000002,False
6
+ dress,Proliferating T (label),DRESS|none - healthy|none,43.770856507230256,1.2212792382529496,1.893939393939394,0.17391304347826086,2361 / 5394,59 / 4831,70 / 3696,5 / 2875,42.54957726897731,1.7200263504611333,True
7
+ dress,ABC / DN2 B,DRESS|none - healthy|none,5.6,6.787330316742081,3.6809815950920246,1.529051987767584,21 / 375,45 / 663,12 / 326,5 / 327,-1.1873303167420817,2.1519296073244405,False
8
+ dress,GZMK+ CD8 T,DRESS|none - healthy|none,2.442528735632184,36.642685851318944,26.062639821029084,36.831550802139034,17 / 696,764 / 2085,233 / 894,551 / 1496,-34.200157115686764,-10.76891098110995,True
9
+ dress,Cytotoxic CD4 T,DRESS|none - healthy|none,0.04743833017077799,0.09985022466300549,0.4844570044408559,0.7717750826901875,1 / 2108,2 / 2003,12 / 2477,7 / 907,-0.052411894492227495,-0.2873180782493316,True
10
+ dress,MS1 monocyte,DRESS|none - healthy|none,11.959654178674352,6.618778860954335,11.205673758865249,4.094076655052265,166 / 1388,129 / 1949,79 / 705,47 / 1148,5.340875317720017,7.111597103812984,True
11
+ dress,ISG-high monocyte,DRESS|none - healthy|none,1.8731988472622478,2.5141097998973834,0.851063829787234,0.2613240418118467,26 / 1388,49 / 1949,6 / 705,3 / 1148,-0.6409109526351355,0.5897397879753874,False
12
+ dress,Platelet-bound monocyte,DRESS|none - healthy|none,0.8645533141210374,0.6670087224217548,0.28368794326241137,0.17421602787456447,12 / 1388,13 / 1949,2 / 705,2 / 1148,0.19754459169928262,0.1094719153878469,True
13
+ dress,Granulocyte-like (LDG),DRESS|none - healthy|none,2.9241306638566913,1.7699115044247788,0.0,0.0,222 / 7592,152 / 8588,0 / 5000,0 / 5000,1.1542191594319124,0.0,False
14
+ kawasaki,C1Q-high monocyte (reference),KD_before - HC,7.034004119249997,4.110992674337189,0.47869559232578546,0.12919896640826875,344 / 5923,45 / 1123,21 / 4450,1 / 798,2.9230114449128077,0.34949662591751673,True
15
+ kawasaki,C1Q-high monocyte (reference),KD_before - KD_after,7.034004119249997,3.986112457411569,0.47869559232578546,0.8372597070796717,344 / 5923,214 / 4004,21 / 4450,21 / 2679,3.047891661838428,-0.3585641147538862,False
16
+ kawasaki,Plasmablast (label),KD_before - HC,1.437192652609059,0.7046814844440664,0.2533333333333333,0.16,498 / 36717,116 / 16203,76 / 30000,24 / 15000,0.7325111681649926,0.0933333333333333,True
17
+ kawasaki,Plasmablast (label),KD_before - KD_after,1.437192652609059,2.439870061643063,0.2533333333333333,0.35333333333333333,498 / 36717,1223 / 50442,76 / 30000,106 / 30000,-1.002677409034004,-0.10000000000000003,True
18
+ kawasaki,Plasmablast (markers),KD_before - HC,5.972684253715625,5.105429296082657,1.0499960069926881,0.696667465933949,576 / 11634,156 / 3316,93 / 11002,28 / 4266,0.8672549576329676,0.3533285410587391,True
19
+ kawasaki,Plasmablast (markers),KD_before - KD_after,5.972684253715625,14.702678589537726,1.0499960069926881,2.1126064935267608,576 / 11634,922 / 6567,93 / 11002,116 / 5730,-8.729994335822102,-1.0626104865340726,True
20
+ kawasaki,Progenitor (label),KD_before - HC,0.16205131072166423,0.04270643662449708,0.15333333333333335,0.0,58 / 36717,7 / 16203,46 / 30000,0 / 15000,0.11934487409716715,0.15333333333333335,True
21
+ kawasaki,Progenitor (label),KD_before - KD_after,0.16205131072166423,0.19255119745601157,0.15333333333333335,0.08333333333333333,58 / 36717,110 / 50442,46 / 30000,25 / 30000,-0.030499886734347337,0.07000000000000002,False
22
+ kawasaki,Proliferating T (label),KD_before - HC,1.059921430997219,1.649853224950404,0.9147467222381316,0.5476650248410975,158 / 16366,164 / 10135,125 / 13373,50 / 9110,-0.5899317939531852,0.3670816973970341,False
23
+ kawasaki,Proliferating T (label),KD_before - KD_after,1.059921430997219,2.85960133022599,0.9147467222381316,0.7812466630738043,158 / 16366,824 / 30531,125 / 13373,155 / 19925,-1.7996798992287713,0.13350005916432728,False
24
+ kawasaki,ABC / DN2 B,KD_before - HC,4.585708855474374,5.175825285366227,1.8808779907995936,1.5779730873205888,457 / 11634,167 / 3316,213 / 11002,68 / 4266,-0.5901164298918529,0.3029049034790048,False
25
+ kawasaki,ABC / DN2 B,KD_before - KD_after,4.585708855474374,4.858333305554515,1.8808779907995936,2.0967879331300394,457 / 11634,283 / 6567,213 / 11002,116 / 5730,-0.2726244500801407,-0.2159099423304458,True
26
+ kawasaki,GZMK+ CD8 T,KD_before - HC,3.0296563432945818,6.713251563573187,14.207959078971479,18.616524203054166,152 / 4930,238 / 3652,488 / 3518,583 / 3062,-3.683595220278605,-4.408565124082687,True
27
+ kawasaki,GZMK+ CD8 T,KD_before - KD_after,3.0296563432945818,6.079950429748073,14.207959078971479,16.84069576215047,152 / 4930,356 / 6789,488 / 3518,813 / 4790,-3.050294086453491,-2.632736683178992,True
28
+ kawasaki,Cytotoxic CD4 T,KD_before - HC,0.06742452799189606,0.3687105730613213,0.3624385927352259,0.3796835604696606,5 / 8948,18 / 4852,27 / 8516,17 / 4764,-0.30128604506942525,-0.017244967734434735,True
29
+ kawasaki,Cytotoxic CD4 T,KD_before - KD_after,0.06742452799189606,0.7917036307311572,0.3624385927352259,0.44582759957437607,5 / 8948,140 / 15056,27 / 8516,50 / 13306,-0.7242791027392612,-0.08338900683915018,True
30
+ kawasaki,MS1 monocyte,KD_before - HC,36.01393143063583,5.270471273857172,17.070500931509045,5.258017935856513,2642 / 5923,50 / 1123,1087 / 4450,39 / 798,30.743460156778657,11.812482995652532,True
31
+ kawasaki,MS1 monocyte,KD_before - KD_after,36.01393143063583,15.382335762311541,17.070500931509045,11.430617382415209,2642 / 5923,571 / 4004,1087 / 4450,316 / 2679,20.631595668324287,5.639883549093836,True
32
+ kawasaki,ISG-high monocyte,KD_before - HC,7.474851578870844,22.492741393304144,0.4664524697707424,0.356437148502812,395 / 5923,254 / 1123,31 / 4450,3 / 798,-15.0178898144333,0.1100153212679304,False
33
+ kawasaki,ISG-high monocyte,KD_before - KD_after,7.474851578870844,19.675234035885143,0.4664524697707424,5.259024858209335,395 / 5923,1607 / 4004,31 / 4450,246 / 2679,-12.2003824570143,-4.792572388438592,True
34
+ kawasaki,Platelet-bound monocyte,KD_before - HC,4.115611001578999,6.929474384564205,0.2613183701510794,0.19607843137254902,321 / 5923,65 / 1123,14 / 4450,2 / 798,-2.8138633829852067,0.06523993877853038,False
35
+ kawasaki,Platelet-bound monocyte,KD_before - KD_after,4.115611001578999,5.939696093085749,0.2613183701510794,0.3946740910849438,321 / 5923,263 / 4004,14 / 4450,11 / 2679,-1.8240850915067508,-0.13335572093386439,True
36
+ kawasaki,Granulocyte-like (LDG),KD_before - HC,3.63189809882348,0.27541936220397933,0.02666666666666667,0.0,1083 / 36717,45 / 16203,8 / 30000,0 / 15000,3.3564787366195006,0.02666666666666667,True
37
+ kawasaki,Granulocyte-like (LDG),KD_before - KD_after,3.63189809882348,2.3542722669038483,0.02666666666666667,0.013333333333333334,1083 / 36717,1108 / 50442,8 / 30000,4 / 30000,1.2776258319196319,0.013333333333333334,True
38
+ sle,C1Q-high monocyte (reference),aSLE - aHD,3.383472601268062,1.7682454928135858,0.6235967083522614,0.7264368510629726,348 / 9639,108 / 6619,21 / 3390,7 / 1665,1.615227108454476,-0.10284014271071118,False
39
+ sle,C1Q-high monocyte (reference),cSLE - cHD,2.281050646650716,1.697982423101878,0.5407014552349637,0.426870356715018,1225 / 45551,117 / 9092,77 / 14947,4 / 1831,0.583068223548838,0.11383109851994572,True
40
+ sle,Plasmablast (label),aSLE - aHD,0.36552998543016224,0.1808309891499833,0.014285714285714287,0.04,143 / 35392,77 / 41440,3 / 21000,6 / 15000,0.18469899628017894,-0.025714285714285714,False
41
+ sle,Plasmablast (label),cSLE - cHD,0.6485051539507586,0.26316099264685144,0.06969696969696969,0.021212121212121213,1084 / 195838,222 / 85565,69 / 99000,7 / 33000,0.38534416130390714,0.04848484848484848,True
42
+ sle,Plasmablast (markers),aSLE - aHD,16.500013238520197,2.8480611900165114,0.23611560013079808,0.39427167954659453,134 / 936,68 / 2442,3 / 911,5 / 1221,13.651952048503684,-0.15815607941579646,False
43
+ sle,Plasmablast (markers),cSLE - cHD,4.837499249314383,1.8861603179977984,0.4386988778780883,0.1680671657707645,907 / 21628,189 / 10482,57 / 12436,7 / 4743,2.9513389313165845,0.27063171210732384,True
44
+ sle,Progenitor (label),aSLE - aHD,0.13842735334114878,0.14471325394371465,0.02857142857142857,0.0,50 / 35392,60 / 41440,6 / 21000,0 / 15000,-0.006285900602565869,0.02857142857142857,False
45
+ sle,Progenitor (label),cSLE - cHD,0.08660684825366805,0.08140750595093381,0.026262626262626265,0.009090909090909092,175 / 195838,67 / 85565,26 / 99000,3 / 33000,0.005199342302734236,0.01717171717171717,True
46
+ sle,Proliferating T (label),aSLE - aHD,1.3708986046051823,0.2534686154336999,0.990682410357999,0.13759616253745005,235 / 20730,69 / 27704,108 / 12979,13 / 10265,1.1174299891714825,0.853086247820549,True
47
+ sle,Proliferating T (label),cSLE - cHD,2.0527491030841025,0.20965210952097363,0.7927259653769708,0.06110365057297782,1532 / 111977,117 / 56080,426 / 60156,14 / 23121,1.843096993563129,0.731622314803993,True
48
+ sle,ABC / DN2 B,aSLE - aHD,8.187803153412277,3.4802442512526213,0.28770384139462546,0.6632855668850429,65 / 936,85 / 2442,3 / 911,8 / 1221,4.707558902159656,-0.37558172549041746,False
49
+ sle,ABC / DN2 B,cSLE - cHD,8.536267391610334,3.8226779570914915,0.4885133318979157,0.6245669848844778,1669 / 21628,394 / 10482,63 / 12436,29 / 4743,4.713589434518843,-0.13605365298656213,False
50
+ sle,GZMK+ CD8 T,aSLE - aHD,24.631616538957925,25.38268241468318,33.082239512158836,35.04974098602877,1559 / 7125,1207 / 5039,966 / 2969,609 / 1747,-0.7510658757252564,-1.9675014738699375,True
51
+ sle,GZMK+ CD8 T,cSLE - cHD,13.338564789331889,5.851674363773847,25.409597751764686,24.94291716308551,5363 / 39111,954 / 17779,3448 / 13518,1021 / 4111,7.486890425558042,0.46668058867917495,True
52
+ sle,Cytotoxic CD4 T,aSLE - aHD,3.0375000379421655,0.7579217666747495,1.2176521298016614,0.6241258201249524,144 / 9990,96 / 17255,75 / 7915,43 / 7211,2.279578271267416,0.5935263096767089,True
53
+ sle,Cytotoxic CD4 T,cSLE - cHD,2.6399616024885604,1.3335681314879353,0.6423219693214928,0.5455871581026789,869 / 51287,362 / 27662,230 / 39554,84 / 16876,1.306393471000625,0.09673481121881389,True
54
+ sle,MS1 monocyte,aSLE - aHD,6.817585373387578,8.172496687802596,1.8053701434211031,1.047438110167643,644 / 9639,648 / 6619,70 / 3390,17 / 1665,-1.354911314415018,0.75793203325346,False
55
+ sle,MS1 monocyte,cSLE - cHD,14.36853997243897,7.823826723215752,1.6254789316843017,2.1249475888968554,7017 / 45551,668 / 9092,262 / 14947,32 / 1831,6.544713249223219,-0.49946865721255373,False
56
+ sle,ISG-high monocyte,aSLE - aHD,32.97126650473444,1.9705799173953409,19.27869624824303,0.45800477355811353,3051 / 9639,105 / 6619,778 / 3390,12 / 1665,31.000686587339096,18.820691474684917,True
57
+ sle,ISG-high monocyte,cSLE - cHD,36.027763735689675,3.640430728770639,23.587792785799493,0.8391276018945103,17241 / 45551,280 / 9092,4134 / 14947,19 / 1831,32.387333006919036,22.748665183904983,True
58
+ sle,Platelet-bound monocyte,aSLE - aHD,3.8834606385729384,1.345829615842886,1.037514823853622,0.5056195051210006,386 / 9639,95 / 6619,35 / 3390,14 / 1665,2.5376310227300527,0.5318953187326214,True
59
+ sle,Platelet-bound monocyte,cSLE - cHD,3.0734237141397407,4.053654468770077,0.794905420383384,0.38973724538018,1400 / 45551,378 / 9092,150 / 14947,10 / 1831,-0.9802307546303362,0.40516817500320396,False
60
+ sle,Granulocyte-like (LDG),aSLE - aHD,0.6408586928098662,0.3539927650156224,0.009523809523809523,0.0,216 / 35392,136 / 41440,2 / 21000,0 / 15000,0.2868659277942438,0.009523809523809523,True
61
+ sle,Granulocyte-like (LDG),cSLE - cHD,0.706673319460222,0.2354701603284065,0.00606060606060606,0.0030303030303030303,1531 / 195838,224 / 85565,6 / 99000,1 / 33000,0.47120315913181554,0.0030303030303030294,True
paper-releases/pbisc-diffusion/updates/20261004T165054Z-rare-states-screen/diffusion/dataset/server_1/model8/plans/rare_states_screen_20261004/out/v1_provisional_markers/corpus_states.csv ADDED
@@ -0,0 +1,265 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ dataset_id,state,parent_cells,missing_genes,state_cells,pct
2
+ 001_A_collection_436154da-bcf1-4130-9c8b-120ff9a888_Perez_et_al._lupus_PBMC_cell-type-specific_molecular_genetic_associations_to_lup,C1Q-high monocyte (reference),2555,,44,1.7221135029354206
3
+ 001_A_collection_436154da-bcf1-4130-9c8b-120ff9a888_Perez_et_al._lupus_PBMC_cell-type-specific_molecular_genetic_associations_to_lup,Plasmablast (label),9000,,14,0.15555555555555556
4
+ 001_A_collection_436154da-bcf1-4130-9c8b-120ff9a888_Perez_et_al._lupus_PBMC_cell-type-specific_molecular_genetic_associations_to_lup,Plasmablast (markers),1085,,12,1.1059907834101383
5
+ 001_A_collection_436154da-bcf1-4130-9c8b-120ff9a888_Perez_et_al._lupus_PBMC_cell-type-specific_molecular_genetic_associations_to_lup,Progenitor (label),9000,,5,0.05555555555555555
6
+ 001_A_collection_436154da-bcf1-4130-9c8b-120ff9a888_Perez_et_al._lupus_PBMC_cell-type-specific_molecular_genetic_associations_to_lup,Proliferating T (label),4268,,51,1.1949390815370198
7
+ 001_A_collection_436154da-bcf1-4130-9c8b-120ff9a888_Perez_et_al._lupus_PBMC_cell-type-specific_molecular_genetic_associations_to_lup,ABC / DN2 B,1085,,31,2.857142857142857
8
+ 001_A_collection_436154da-bcf1-4130-9c8b-120ff9a888_Perez_et_al._lupus_PBMC_cell-type-specific_molecular_genetic_associations_to_lup,GZMK+ CD8 T,1163,,221,19.002579535683576
9
+ 001_A_collection_436154da-bcf1-4130-9c8b-120ff9a888_Perez_et_al._lupus_PBMC_cell-type-specific_molecular_genetic_associations_to_lup,Cytotoxic CD4 T,2307,,27,1.1703511053315996
10
+ 001_A_collection_436154da-bcf1-4130-9c8b-120ff9a888_Perez_et_al._lupus_PBMC_cell-type-specific_molecular_genetic_associations_to_lup,MS1 monocyte,2555,,197,7.710371819960861
11
+ 001_A_collection_436154da-bcf1-4130-9c8b-120ff9a888_Perez_et_al._lupus_PBMC_cell-type-specific_molecular_genetic_associations_to_lup,ISG-high monocyte,2555,,342,13.385518590998043
12
+ 001_A_collection_436154da-bcf1-4130-9c8b-120ff9a888_Perez_et_al._lupus_PBMC_cell-type-specific_molecular_genetic_associations_to_lup,Platelet-bound monocyte,2555,,94,3.679060665362035
13
+ 001_A_collection_436154da-bcf1-4130-9c8b-120ff9a888_Perez_et_al._lupus_PBMC_cell-type-specific_molecular_genetic_associations_to_lup,Granulocyte-like (LDG),9000,,33,0.36666666666666664
14
+ 005_A_collection_dde06e0f-ab3b-46be-96a2-a8082383c4_OneK1K_Yazar_et_al._single-cell_eQTL_mapping,C1Q-high monocyte (reference),305,,6,1.9672131147540983
15
+ 005_A_collection_dde06e0f-ab3b-46be-96a2-a8082383c4_OneK1K_Yazar_et_al._single-cell_eQTL_mapping,Plasmablast (label),8750,,27,0.30857142857142855
16
+ 005_A_collection_dde06e0f-ab3b-46be-96a2-a8082383c4_OneK1K_Yazar_et_al._single-cell_eQTL_mapping,Plasmablast (markers),1031,,31,3.0067895247332688
17
+ 005_A_collection_dde06e0f-ab3b-46be-96a2-a8082383c4_OneK1K_Yazar_et_al._single-cell_eQTL_mapping,Progenitor (label),8750,,14,0.16
18
+ 005_A_collection_dde06e0f-ab3b-46be-96a2-a8082383c4_OneK1K_Yazar_et_al._single-cell_eQTL_mapping,Proliferating T (label),6187,,60,0.9697753353806369
19
+ 005_A_collection_dde06e0f-ab3b-46be-96a2-a8082383c4_OneK1K_Yazar_et_al._single-cell_eQTL_mapping,ABC / DN2 B,1031,,38,3.6857419980601356
20
+ 005_A_collection_dde06e0f-ab3b-46be-96a2-a8082383c4_OneK1K_Yazar_et_al._single-cell_eQTL_mapping,GZMK+ CD8 T,1236,,288,23.300970873786408
21
+ 005_A_collection_dde06e0f-ab3b-46be-96a2-a8082383c4_OneK1K_Yazar_et_al._single-cell_eQTL_mapping,Cytotoxic CD4 T,4062,,71,1.7479074347612014
22
+ 005_A_collection_dde06e0f-ab3b-46be-96a2-a8082383c4_OneK1K_Yazar_et_al._single-cell_eQTL_mapping,MS1 monocyte,305,,30,9.836065573770492
23
+ 005_A_collection_dde06e0f-ab3b-46be-96a2-a8082383c4_OneK1K_Yazar_et_al._single-cell_eQTL_mapping,ISG-high monocyte,305,,19,6.229508196721311
24
+ 005_A_collection_dde06e0f-ab3b-46be-96a2-a8082383c4_OneK1K_Yazar_et_al._single-cell_eQTL_mapping,Platelet-bound monocyte,305,,12,3.9344262295081966
25
+ 005_A_collection_dde06e0f-ab3b-46be-96a2-a8082383c4_OneK1K_Yazar_et_al._single-cell_eQTL_mapping,Granulocyte-like (LDG),8750,,14,0.16
26
+ 006_A_collection_ced320a1-29f3-47c1-a735-513c7084d5_AIDA_Asian_Immune_Diversity_Atlas,C1Q-high monocyte (reference),1413,,34,2.4062278839348905
27
+ 006_A_collection_ced320a1-29f3-47c1-a735-513c7084d5_AIDA_Asian_Immune_Diversity_Atlas,Plasmablast (label),9000,,0,0.0
28
+ 006_A_collection_ced320a1-29f3-47c1-a735-513c7084d5_AIDA_Asian_Immune_Diversity_Atlas,Plasmablast (markers),767,,50,6.51890482398957
29
+ 006_A_collection_ced320a1-29f3-47c1-a735-513c7084d5_AIDA_Asian_Immune_Diversity_Atlas,Progenitor (label),9000,,0,0.0
30
+ 006_A_collection_ced320a1-29f3-47c1-a735-513c7084d5_AIDA_Asian_Immune_Diversity_Atlas,Proliferating T (label),5814,,12,0.20639834881320948
31
+ 006_A_collection_ced320a1-29f3-47c1-a735-513c7084d5_AIDA_Asian_Immune_Diversity_Atlas,ABC / DN2 B,767,,113,14.732724902216427
32
+ 006_A_collection_ced320a1-29f3-47c1-a735-513c7084d5_AIDA_Asian_Immune_Diversity_Atlas,GZMK+ CD8 T,1828,,424,23.194748358862146
33
+ 006_A_collection_ced320a1-29f3-47c1-a735-513c7084d5_AIDA_Asian_Immune_Diversity_Atlas,Cytotoxic CD4 T,2790,,40,1.4336917562724014
34
+ 006_A_collection_ced320a1-29f3-47c1-a735-513c7084d5_AIDA_Asian_Immune_Diversity_Atlas,MS1 monocyte,1413,,203,14.366595895258316
35
+ 006_A_collection_ced320a1-29f3-47c1-a735-513c7084d5_AIDA_Asian_Immune_Diversity_Atlas,ISG-high monocyte,1413,,182,12.880396319886765
36
+ 006_A_collection_ced320a1-29f3-47c1-a735-513c7084d5_AIDA_Asian_Immune_Diversity_Atlas,Platelet-bound monocyte,1413,,24,1.6985138004246285
37
+ 006_A_collection_ced320a1-29f3-47c1-a735-513c7084d5_AIDA_Asian_Immune_Diversity_Atlas,Granulocyte-like (LDG),9000,,87,0.9666666666666667
38
+ 007_A_collection_e1a9ca56-f2ee-435d-980a-4f49ab7a95_Miao_et_al._RA_PBMC_disease_activity-associated_PBMC_subsets,C1Q-high monocyte (reference),734,,3,0.4087193460490463
39
+ 007_A_collection_e1a9ca56-f2ee-435d-980a-4f49ab7a95_Miao_et_al._RA_PBMC_disease_activity-associated_PBMC_subsets,Plasmablast (label),8000,,3,0.0375
40
+ 007_A_collection_e1a9ca56-f2ee-435d-980a-4f49ab7a95_Miao_et_al._RA_PBMC_disease_activity-associated_PBMC_subsets,Plasmablast (markers),350,,0,0.0
41
+ 007_A_collection_e1a9ca56-f2ee-435d-980a-4f49ab7a95_Miao_et_al._RA_PBMC_disease_activity-associated_PBMC_subsets,Progenitor (label),8000,,2,0.025
42
+ 007_A_collection_e1a9ca56-f2ee-435d-980a-4f49ab7a95_Miao_et_al._RA_PBMC_disease_activity-associated_PBMC_subsets,Proliferating T (label),3613,,7,0.19374481040686412
43
+ 007_A_collection_e1a9ca56-f2ee-435d-980a-4f49ab7a95_Miao_et_al._RA_PBMC_disease_activity-associated_PBMC_subsets,ABC / DN2 B,350,,3,0.8571428571428571
44
+ 007_A_collection_e1a9ca56-f2ee-435d-980a-4f49ab7a95_Miao_et_al._RA_PBMC_disease_activity-associated_PBMC_subsets,GZMK+ CD8 T,547,,33,6.03290676416819
45
+ 007_A_collection_e1a9ca56-f2ee-435d-980a-4f49ab7a95_Miao_et_al._RA_PBMC_disease_activity-associated_PBMC_subsets,Cytotoxic CD4 T,1236,,0,0.0
46
+ 007_A_collection_e1a9ca56-f2ee-435d-980a-4f49ab7a95_Miao_et_al._RA_PBMC_disease_activity-associated_PBMC_subsets,MS1 monocyte,734,,4,0.5449591280653951
47
+ 007_A_collection_e1a9ca56-f2ee-435d-980a-4f49ab7a95_Miao_et_al._RA_PBMC_disease_activity-associated_PBMC_subsets,ISG-high monocyte,734,,8,1.0899182561307903
48
+ 007_A_collection_e1a9ca56-f2ee-435d-980a-4f49ab7a95_Miao_et_al._RA_PBMC_disease_activity-associated_PBMC_subsets,Platelet-bound monocyte,734,PPBP PF4,0,0.0
49
+ 007_A_collection_e1a9ca56-f2ee-435d-980a-4f49ab7a95_Miao_et_al._RA_PBMC_disease_activity-associated_PBMC_subsets,Granulocyte-like (LDG),8000,MPO,1,0.0125
50
+ 009_A_Human_Immune_Health_Atlas_Human_Immune_Health_Atlas_AIFI_immune_dynamics_across_healthy_age,C1Q-high monocyte (reference),1310,,13,0.9923664122137404
51
+ 009_A_Human_Immune_Health_Atlas_Human_Immune_Health_Atlas_AIFI_immune_dynamics_across_healthy_age,Plasmablast (label),8000,,7,0.0875
52
+ 009_A_Human_Immune_Health_Atlas_Human_Immune_Health_Atlas_AIFI_immune_dynamics_across_healthy_age,Plasmablast (markers),794,,14,1.7632241813602014
53
+ 009_A_Human_Immune_Health_Atlas_Human_Immune_Health_Atlas_AIFI_immune_dynamics_across_healthy_age,Progenitor (label),8000,,10,0.125
54
+ 009_A_Human_Immune_Health_Atlas_Human_Immune_Health_Atlas_AIFI_immune_dynamics_across_healthy_age,Proliferating T (label),5153,,27,0.5239666213856006
55
+ 009_A_Human_Immune_Health_Atlas_Human_Immune_Health_Atlas_AIFI_immune_dynamics_across_healthy_age,ABC / DN2 B,794,,85,10.705289672544081
56
+ 009_A_Human_Immune_Health_Atlas_Human_Immune_Health_Atlas_AIFI_immune_dynamics_across_healthy_age,GZMK+ CD8 T,1256,,347,27.627388535031848
57
+ 009_A_Human_Immune_Health_Atlas_Human_Immune_Health_Atlas_AIFI_immune_dynamics_across_healthy_age,Cytotoxic CD4 T,3099,,24,0.7744433688286544
58
+ 009_A_Human_Immune_Health_Atlas_Human_Immune_Health_Atlas_AIFI_immune_dynamics_across_healthy_age,MS1 monocyte,1310,,249,19.00763358778626
59
+ 009_A_Human_Immune_Health_Atlas_Human_Immune_Health_Atlas_AIFI_immune_dynamics_across_healthy_age,ISG-high monocyte,1310,,216,16.48854961832061
60
+ 009_A_Human_Immune_Health_Atlas_Human_Immune_Health_Atlas_AIFI_immune_dynamics_across_healthy_age,Platelet-bound monocyte,1310,,22,1.6793893129770991
61
+ 009_A_Human_Immune_Health_Atlas_Human_Immune_Health_Atlas_AIFI_immune_dynamics_across_healthy_age,Granulocyte-like (LDG),8000,,107,1.3375
62
+ 010_A_collection_4a9fd4d7-d870-4265-89a5-ad51ab811d_ScaleBio_single-cell_RNA_sequencing_of_human_PBMCs,C1Q-high monocyte (reference),1491,,6,0.4024144869215292
63
+ 010_A_collection_4a9fd4d7-d870-4265-89a5-ad51ab811d_ScaleBio_single-cell_RNA_sequencing_of_human_PBMCs,Plasmablast (label),8250,,13,0.15757575757575756
64
+ 010_A_collection_4a9fd4d7-d870-4265-89a5-ad51ab811d_ScaleBio_single-cell_RNA_sequencing_of_human_PBMCs,Plasmablast (markers),1527,,6,0.3929273084479371
65
+ 010_A_collection_4a9fd4d7-d870-4265-89a5-ad51ab811d_ScaleBio_single-cell_RNA_sequencing_of_human_PBMCs,Progenitor (label),8250,,7,0.08484848484848485
66
+ 010_A_collection_4a9fd4d7-d870-4265-89a5-ad51ab811d_ScaleBio_single-cell_RNA_sequencing_of_human_PBMCs,Proliferating T (label),4533,,54,1.1912640635340834
67
+ 010_A_collection_4a9fd4d7-d870-4265-89a5-ad51ab811d_ScaleBio_single-cell_RNA_sequencing_of_human_PBMCs,ABC / DN2 B,1527,,402,26.326129666011788
68
+ 010_A_collection_4a9fd4d7-d870-4265-89a5-ad51ab811d_ScaleBio_single-cell_RNA_sequencing_of_human_PBMCs,GZMK+ CD8 T,513,,67,13.060428849902534
69
+ 010_A_collection_4a9fd4d7-d870-4265-89a5-ad51ab811d_ScaleBio_single-cell_RNA_sequencing_of_human_PBMCs,Cytotoxic CD4 T,2510,,0,0.0
70
+ 010_A_collection_4a9fd4d7-d870-4265-89a5-ad51ab811d_ScaleBio_single-cell_RNA_sequencing_of_human_PBMCs,MS1 monocyte,1491,,11,0.7377598926894702
71
+ 010_A_collection_4a9fd4d7-d870-4265-89a5-ad51ab811d_ScaleBio_single-cell_RNA_sequencing_of_human_PBMCs,ISG-high monocyte,1491,,61,4.09121395036888
72
+ 010_A_collection_4a9fd4d7-d870-4265-89a5-ad51ab811d_ScaleBio_single-cell_RNA_sequencing_of_human_PBMCs,Platelet-bound monocyte,1491,,5,0.335345405767941
73
+ 010_A_collection_4a9fd4d7-d870-4265-89a5-ad51ab811d_ScaleBio_single-cell_RNA_sequencing_of_human_PBMCs,Granulocyte-like (LDG),8250,LCN2,67,0.8121212121212121
74
+ 053_B_collection_b0cf0afa-ec40-4d65-b570-ed4ceacc68_Integrated_analysis_of_multimodal_single-cell_data_CITE-seq_PBMC,C1Q-high monocyte (reference),2491,,67,2.6896828582898435
75
+ 053_B_collection_b0cf0afa-ec40-4d65-b570-ed4ceacc68_Integrated_analysis_of_multimodal_single-cell_data_CITE-seq_PBMC,Plasmablast (label),8000,,20,0.25
76
+ 053_B_collection_b0cf0afa-ec40-4d65-b570-ed4ceacc68_Integrated_analysis_of_multimodal_single-cell_data_CITE-seq_PBMC,Plasmablast (markers),728,,54,7.417582417582418
77
+ 053_B_collection_b0cf0afa-ec40-4d65-b570-ed4ceacc68_Integrated_analysis_of_multimodal_single-cell_data_CITE-seq_PBMC,Progenitor (label),8000,,12,0.15
78
+ 053_B_collection_b0cf0afa-ec40-4d65-b570-ed4ceacc68_Integrated_analysis_of_multimodal_single-cell_data_CITE-seq_PBMC,Proliferating T (label),3508,,21,0.5986316989737742
79
+ 053_B_collection_b0cf0afa-ec40-4d65-b570-ed4ceacc68_Integrated_analysis_of_multimodal_single-cell_data_CITE-seq_PBMC,ABC / DN2 B,728,,179,24.587912087912088
80
+ 053_B_collection_b0cf0afa-ec40-4d65-b570-ed4ceacc68_Integrated_analysis_of_multimodal_single-cell_data_CITE-seq_PBMC,GZMK+ CD8 T,1027,,213,20.74001947419669
81
+ 053_B_collection_b0cf0afa-ec40-4d65-b570-ed4ceacc68_Integrated_analysis_of_multimodal_single-cell_data_CITE-seq_PBMC,Cytotoxic CD4 T,1819,,62,3.4084661902144036
82
+ 053_B_collection_b0cf0afa-ec40-4d65-b570-ed4ceacc68_Integrated_analysis_of_multimodal_single-cell_data_CITE-seq_PBMC,MS1 monocyte,2491,,720,28.90405459654757
83
+ 053_B_collection_b0cf0afa-ec40-4d65-b570-ed4ceacc68_Integrated_analysis_of_multimodal_single-cell_data_CITE-seq_PBMC,ISG-high monocyte,2491,,871,34.96587715776796
84
+ 053_B_collection_b0cf0afa-ec40-4d65-b570-ed4ceacc68_Integrated_analysis_of_multimodal_single-cell_data_CITE-seq_PBMC,Platelet-bound monocyte,2491,,138,5.539943797671618
85
+ 053_B_collection_b0cf0afa-ec40-4d65-b570-ed4ceacc68_Integrated_analysis_of_multimodal_single-cell_data_CITE-seq_PBMC,Granulocyte-like (LDG),8000,,352,4.4
86
+ 058_B_collection_eb735cc9-d0a7-48fa-b255-db726bf365_COVID_PBMC_nasal_swab_donors_with_immunodeficiencies_and_autoimmune_conditions,C1Q-high monocyte (reference),2448,,64,2.6143790849673203
87
+ 058_B_collection_eb735cc9-d0a7-48fa-b255-db726bf365_COVID_PBMC_nasal_swab_donors_with_immunodeficiencies_and_autoimmune_conditions,Plasmablast (label),8000,,93,1.1625
88
+ 058_B_collection_eb735cc9-d0a7-48fa-b255-db726bf365_COVID_PBMC_nasal_swab_donors_with_immunodeficiencies_and_autoimmune_conditions,Plasmablast (markers),846,,106,12.529550827423169
89
+ 058_B_collection_eb735cc9-d0a7-48fa-b255-db726bf365_COVID_PBMC_nasal_swab_donors_with_immunodeficiencies_and_autoimmune_conditions,Progenitor (label),8000,,31,0.3875
90
+ 058_B_collection_eb735cc9-d0a7-48fa-b255-db726bf365_COVID_PBMC_nasal_swab_donors_with_immunodeficiencies_and_autoimmune_conditions,Proliferating T (label),3442,,91,2.643811737361999
91
+ 058_B_collection_eb735cc9-d0a7-48fa-b255-db726bf365_COVID_PBMC_nasal_swab_donors_with_immunodeficiencies_and_autoimmune_conditions,ABC / DN2 B,846,,87,10.28368794326241
92
+ 058_B_collection_eb735cc9-d0a7-48fa-b255-db726bf365_COVID_PBMC_nasal_swab_donors_with_immunodeficiencies_and_autoimmune_conditions,GZMK+ CD8 T,874,,168,19.221967963386728
93
+ 058_B_collection_eb735cc9-d0a7-48fa-b255-db726bf365_COVID_PBMC_nasal_swab_donors_with_immunodeficiencies_and_autoimmune_conditions,Cytotoxic CD4 T,1679,,17,1.0125074449076832
94
+ 058_B_collection_eb735cc9-d0a7-48fa-b255-db726bf365_COVID_PBMC_nasal_swab_donors_with_immunodeficiencies_and_autoimmune_conditions,MS1 monocyte,2448,,667,27.24673202614379
95
+ 058_B_collection_eb735cc9-d0a7-48fa-b255-db726bf365_COVID_PBMC_nasal_swab_donors_with_immunodeficiencies_and_autoimmune_conditions,ISG-high monocyte,2448,,282,11.519607843137255
96
+ 058_B_collection_eb735cc9-d0a7-48fa-b255-db726bf365_COVID_PBMC_nasal_swab_donors_with_immunodeficiencies_and_autoimmune_conditions,Platelet-bound monocyte,2448,,185,7.55718954248366
97
+ 058_B_collection_eb735cc9-d0a7-48fa-b255-db726bf365_COVID_PBMC_nasal_swab_donors_with_immunodeficiencies_and_autoimmune_conditions,Granulocyte-like (LDG),8000,,155,1.9375
98
+ 061_A_GSE274680_Savage_Allen_RA_at-risk_longitudinal_progression_PBMC_multi-omic_cohort,C1Q-high monocyte (reference),1498,,21,1.4018691588785046
99
+ 061_A_GSE274680_Savage_Allen_RA_at-risk_longitudinal_progression_PBMC_multi-omic_cohort,Plasmablast (label),8000,,5,0.0625
100
+ 061_A_GSE274680_Savage_Allen_RA_at-risk_longitudinal_progression_PBMC_multi-omic_cohort,Plasmablast (markers),880,,27,3.0681818181818183
101
+ 061_A_GSE274680_Savage_Allen_RA_at-risk_longitudinal_progression_PBMC_multi-omic_cohort,Progenitor (label),8000,,5,0.0625
102
+ 061_A_GSE274680_Savage_Allen_RA_at-risk_longitudinal_progression_PBMC_multi-omic_cohort,Proliferating T (label),4765,,27,0.5666316894018888
103
+ 061_A_GSE274680_Savage_Allen_RA_at-risk_longitudinal_progression_PBMC_multi-omic_cohort,ABC / DN2 B,880,,101,11.477272727272727
104
+ 061_A_GSE274680_Savage_Allen_RA_at-risk_longitudinal_progression_PBMC_multi-omic_cohort,GZMK+ CD8 T,1235,,374,30.2834008097166
105
+ 061_A_GSE274680_Savage_Allen_RA_at-risk_longitudinal_progression_PBMC_multi-omic_cohort,Cytotoxic CD4 T,2643,,31,1.172909572455543
106
+ 061_A_GSE274680_Savage_Allen_RA_at-risk_longitudinal_progression_PBMC_multi-omic_cohort,MS1 monocyte,1498,,292,19.492656875834445
107
+ 061_A_GSE274680_Savage_Allen_RA_at-risk_longitudinal_progression_PBMC_multi-omic_cohort,ISG-high monocyte,1498,,168,11.214953271028037
108
+ 061_A_GSE274680_Savage_Allen_RA_at-risk_longitudinal_progression_PBMC_multi-omic_cohort,Platelet-bound monocyte,1498,,58,3.871829105473965
109
+ 061_A_GSE274680_Savage_Allen_RA_at-risk_longitudinal_progression_PBMC_multi-omic_cohort,Granulocyte-like (LDG),8000,,137,1.7125
110
+ 065_A_GSE271896_GSE271896_Sound_Life_deep_longitudinal_immune_profiling,C1Q-high monocyte (reference),1797,,15,0.8347245409015025
111
+ 065_A_GSE271896_GSE271896_Sound_Life_deep_longitudinal_immune_profiling,Plasmablast (label),8000,,0,0.0
112
+ 065_A_GSE271896_GSE271896_Sound_Life_deep_longitudinal_immune_profiling,Plasmablast (markers),410,,5,1.2195121951219512
113
+ 065_A_GSE271896_GSE271896_Sound_Life_deep_longitudinal_immune_profiling,Progenitor (label),8000,,8,0.1
114
+ 065_A_GSE271896_GSE271896_Sound_Life_deep_longitudinal_immune_profiling,Proliferating T (label),5210,,50,0.9596928982725528
115
+ 065_A_GSE271896_GSE271896_Sound_Life_deep_longitudinal_immune_profiling,ABC / DN2 B,410,,36,8.78048780487805
116
+ 065_A_GSE271896_GSE271896_Sound_Life_deep_longitudinal_immune_profiling,GZMK+ CD8 T,1967,,322,16.370106761565836
117
+ 065_A_GSE271896_GSE271896_Sound_Life_deep_longitudinal_immune_profiling,Cytotoxic CD4 T,2297,,8,0.348280365694384
118
+ 065_A_GSE271896_GSE271896_Sound_Life_deep_longitudinal_immune_profiling,MS1 monocyte,1797,,413,22.982749026154703
119
+ 065_A_GSE271896_GSE271896_Sound_Life_deep_longitudinal_immune_profiling,ISG-high monocyte,1797,,374,20.812465219810797
120
+ 065_A_GSE271896_GSE271896_Sound_Life_deep_longitudinal_immune_profiling,Platelet-bound monocyte,1797,,21,1.1686143572621035
121
+ 065_A_GSE271896_GSE271896_Sound_Life_deep_longitudinal_immune_profiling,Granulocyte-like (LDG),8000,,184,2.3
122
+ 071_C_JDM_CITE-seq_PBMC_CELLxGENE_JDM_CITE-seq_PBMC_CELLxGENE,C1Q-high monocyte (reference),1259,,4,0.3177124702144559
123
+ 071_C_JDM_CITE-seq_PBMC_CELLxGENE_JDM_CITE-seq_PBMC_CELLxGENE,Plasmablast (label),8000,,27,0.3375
124
+ 071_C_JDM_CITE-seq_PBMC_CELLxGENE_JDM_CITE-seq_PBMC_CELLxGENE,Plasmablast (markers),1202,,50,4.159733777038269
125
+ 071_C_JDM_CITE-seq_PBMC_CELLxGENE_JDM_CITE-seq_PBMC_CELLxGENE,Progenitor (label),8000,,11,0.1375
126
+ 071_C_JDM_CITE-seq_PBMC_CELLxGENE_JDM_CITE-seq_PBMC_CELLxGENE,Proliferating T (label),4758,,28,0.5884825556956704
127
+ 071_C_JDM_CITE-seq_PBMC_CELLxGENE_JDM_CITE-seq_PBMC_CELLxGENE,ABC / DN2 B,1202,,157,13.061564059900167
128
+ 071_C_JDM_CITE-seq_PBMC_CELLxGENE_JDM_CITE-seq_PBMC_CELLxGENE,GZMK+ CD8 T,1492,,66,4.423592493297587
129
+ 071_C_JDM_CITE-seq_PBMC_CELLxGENE_JDM_CITE-seq_PBMC_CELLxGENE,Cytotoxic CD4 T,2819,,10,0.35473572188719404
130
+ 071_C_JDM_CITE-seq_PBMC_CELLxGENE_JDM_CITE-seq_PBMC_CELLxGENE,MS1 monocyte,1259,,317,25.17871326449563
131
+ 071_C_JDM_CITE-seq_PBMC_CELLxGENE_JDM_CITE-seq_PBMC_CELLxGENE,ISG-high monocyte,1259,,303,24.066719618745037
132
+ 071_C_JDM_CITE-seq_PBMC_CELLxGENE_JDM_CITE-seq_PBMC_CELLxGENE,Platelet-bound monocyte,1259,,63,5.003971405877681
133
+ 071_C_JDM_CITE-seq_PBMC_CELLxGENE_JDM_CITE-seq_PBMC_CELLxGENE,Granulocyte-like (LDG),8000,,102,1.275
134
+ 074_A_COMBAT_CELLxGENE_collection_COMBAT_CELLxGENE_collection,C1Q-high monocyte (reference),2510,,96,3.8247011952191237
135
+ 074_A_COMBAT_CELLxGENE_collection_COMBAT_CELLxGENE_collection,Plasmablast (label),8000,,95,1.1875
136
+ 074_A_COMBAT_CELLxGENE_collection_COMBAT_CELLxGENE_collection,Plasmablast (markers),541,,104,19.22365988909427
137
+ 074_A_COMBAT_CELLxGENE_collection_COMBAT_CELLxGENE_collection,Progenitor (label),8000,,16,0.2
138
+ 074_A_COMBAT_CELLxGENE_collection_COMBAT_CELLxGENE_collection,Proliferating T (label),4035,,178,4.411400247831475
139
+ 074_A_COMBAT_CELLxGENE_collection_COMBAT_CELLxGENE_collection,ABC / DN2 B,541,,48,8.872458410351202
140
+ 074_A_COMBAT_CELLxGENE_collection_COMBAT_CELLxGENE_collection,GZMK+ CD8 T,1006,,294,29.22465208747515
141
+ 074_A_COMBAT_CELLxGENE_collection_COMBAT_CELLxGENE_collection,Cytotoxic CD4 T,2475,,26,1.0505050505050506
142
+ 074_A_COMBAT_CELLxGENE_collection_COMBAT_CELLxGENE_collection,MS1 monocyte,2510,,878,34.9800796812749
143
+ 074_A_COMBAT_CELLxGENE_collection_COMBAT_CELLxGENE_collection,ISG-high monocyte,2510,,724,28.844621513944222
144
+ 074_A_COMBAT_CELLxGENE_collection_COMBAT_CELLxGENE_collection,Platelet-bound monocyte,2510,,3,0.11952191235059761
145
+ 074_A_COMBAT_CELLxGENE_collection_COMBAT_CELLxGENE_collection,Granulocyte-like (LDG),8000,,192,2.4
146
+ 081_B_Single-cell_atlas_of_peripheral_immune_respon_Single-cell_atlas_of_peripheral_immune_response_to_SARS-CoV-2,C1Q-high monocyte (reference),2313,,16,0.6917423259835711
147
+ 081_B_Single-cell_atlas_of_peripheral_immune_respon_Single-cell_atlas_of_peripheral_immune_response_to_SARS-CoV-2,Plasmablast (label),8000,,188,2.35
148
+ 081_B_Single-cell_atlas_of_peripheral_immune_respon_Single-cell_atlas_of_peripheral_immune_response_to_SARS-CoV-2,Plasmablast (markers),819,,138,16.84981684981685
149
+ 081_B_Single-cell_atlas_of_peripheral_immune_respon_Single-cell_atlas_of_peripheral_immune_response_to_SARS-CoV-2,Progenitor (label),8000,,24,0.3
150
+ 081_B_Single-cell_atlas_of_peripheral_immune_respon_Single-cell_atlas_of_peripheral_immune_response_to_SARS-CoV-2,Proliferating T (label),2816,,189,6.7116477272727275
151
+ 081_B_Single-cell_atlas_of_peripheral_immune_respon_Single-cell_atlas_of_peripheral_immune_response_to_SARS-CoV-2,ABC / DN2 B,819,,68,8.302808302808304
152
+ 081_B_Single-cell_atlas_of_peripheral_immune_respon_Single-cell_atlas_of_peripheral_immune_response_to_SARS-CoV-2,GZMK+ CD8 T,1092,,30,2.7472527472527473
153
+ 081_B_Single-cell_atlas_of_peripheral_immune_respon_Single-cell_atlas_of_peripheral_immune_response_to_SARS-CoV-2,Cytotoxic CD4 T,933,,4,0.4287245444801715
154
+ 081_B_Single-cell_atlas_of_peripheral_immune_respon_Single-cell_atlas_of_peripheral_immune_response_to_SARS-CoV-2,MS1 monocyte,2313,,444,19.195849546044098
155
+ 081_B_Single-cell_atlas_of_peripheral_immune_respon_Single-cell_atlas_of_peripheral_immune_response_to_SARS-CoV-2,ISG-high monocyte,2313,,815,35.23562472978816
156
+ 081_B_Single-cell_atlas_of_peripheral_immune_respon_Single-cell_atlas_of_peripheral_immune_response_to_SARS-CoV-2,Platelet-bound monocyte,2313,,58,2.5075659316904453
157
+ 081_B_Single-cell_atlas_of_peripheral_immune_respon_Single-cell_atlas_of_peripheral_immune_response_to_SARS-CoV-2,Granulocyte-like (LDG),8000,,185,2.3125
158
+ 093_C_Local_and_systemic_SARS-CoV-2_response_CELLxG_Local_and_systemic_SARS-CoV-2_response_CELLxGENE,C1Q-high monocyte (reference),1369,,32,2.337472607742878
159
+ 093_C_Local_and_systemic_SARS-CoV-2_response_CELLxG_Local_and_systemic_SARS-CoV-2_response_CELLxGENE,Plasmablast (label),8000,,37,0.4625
160
+ 093_C_Local_and_systemic_SARS-CoV-2_response_CELLxG_Local_and_systemic_SARS-CoV-2_response_CELLxGENE,Plasmablast (markers),1020,,46,4.509803921568627
161
+ 093_C_Local_and_systemic_SARS-CoV-2_response_CELLxG_Local_and_systemic_SARS-CoV-2_response_CELLxGENE,Progenitor (label),8000,,26,0.325
162
+ 093_C_Local_and_systemic_SARS-CoV-2_response_CELLxG_Local_and_systemic_SARS-CoV-2_response_CELLxGENE,Proliferating T (label),4398,,16,0.36380172805820826
163
+ 093_C_Local_and_systemic_SARS-CoV-2_response_CELLxG_Local_and_systemic_SARS-CoV-2_response_CELLxGENE,ABC / DN2 B,1020,,100,9.803921568627452
164
+ 093_C_Local_and_systemic_SARS-CoV-2_response_CELLxG_Local_and_systemic_SARS-CoV-2_response_CELLxGENE,GZMK+ CD8 T,1339,,187,13.965646004480956
165
+ 093_C_Local_and_systemic_SARS-CoV-2_response_CELLxG_Local_and_systemic_SARS-CoV-2_response_CELLxGENE,Cytotoxic CD4 T,2022,,6,0.29673590504451036
166
+ 093_C_Local_and_systemic_SARS-CoV-2_response_CELLxG_Local_and_systemic_SARS-CoV-2_response_CELLxGENE,MS1 monocyte,1369,,185,13.513513513513514
167
+ 093_C_Local_and_systemic_SARS-CoV-2_response_CELLxG_Local_and_systemic_SARS-CoV-2_response_CELLxGENE,ISG-high monocyte,1369,,297,21.694667640613588
168
+ 093_C_Local_and_systemic_SARS-CoV-2_response_CELLxG_Local_and_systemic_SARS-CoV-2_response_CELLxGENE,Platelet-bound monocyte,1369,,49,3.579254930606282
169
+ 093_C_Local_and_systemic_SARS-CoV-2_response_CELLxG_Local_and_systemic_SARS-CoV-2_response_CELLxGENE,Granulocyte-like (LDG),8000,,54,0.675
170
+ 200_A_GSE275067_Immunobiology_of_Aging_Cohort_PBMC_Profiling,C1Q-high monocyte (reference),1007,,12,1.1916583912611718
171
+ 200_A_GSE275067_Immunobiology_of_Aging_Cohort_PBMC_Profiling,Plasmablast (label),8000,,0,0.0
172
+ 200_A_GSE275067_Immunobiology_of_Aging_Cohort_PBMC_Profiling,Plasmablast (markers),0,,0,
173
+ 200_A_GSE275067_Immunobiology_of_Aging_Cohort_PBMC_Profiling,Progenitor (label),8000,,10,0.125
174
+ 200_A_GSE275067_Immunobiology_of_Aging_Cohort_PBMC_Profiling,Proliferating T (label),4943,,110,2.2253692089823995
175
+ 200_A_GSE275067_Immunobiology_of_Aging_Cohort_PBMC_Profiling,ABC / DN2 B,0,,0,
176
+ 200_A_GSE275067_Immunobiology_of_Aging_Cohort_PBMC_Profiling,GZMK+ CD8 T,2019,,297,14.710252600297176
177
+ 200_A_GSE275067_Immunobiology_of_Aging_Cohort_PBMC_Profiling,Cytotoxic CD4 T,2235,,35,1.5659955257270695
178
+ 200_A_GSE275067_Immunobiology_of_Aging_Cohort_PBMC_Profiling,MS1 monocyte,1007,,205,20.357497517378352
179
+ 200_A_GSE275067_Immunobiology_of_Aging_Cohort_PBMC_Profiling,ISG-high monocyte,1007,,286,28.401191658391262
180
+ 200_A_GSE275067_Immunobiology_of_Aging_Cohort_PBMC_Profiling,Platelet-bound monocyte,1007,,43,4.270109235352532
181
+ 200_A_GSE275067_Immunobiology_of_Aging_Cohort_PBMC_Profiling,Granulocyte-like (LDG),8000,,186,2.325
182
+ 202_B_GSE161918_Time-resolved_Systems_Immunology_Reveals_a_Late_Juncture_Linked_to_Fatal_COVID-1,C1Q-high monocyte (reference),2783,,54,1.9403521379805966
183
+ 202_B_GSE161918_Time-resolved_Systems_Immunology_Reveals_a_Late_Juncture_Linked_to_Fatal_COVID-1,Plasmablast (label),8000,,19,0.2375
184
+ 202_B_GSE161918_Time-resolved_Systems_Immunology_Reveals_a_Late_Juncture_Linked_to_Fatal_COVID-1,Plasmablast (markers),600,,21,3.5
185
+ 202_B_GSE161918_Time-resolved_Systems_Immunology_Reveals_a_Late_Juncture_Linked_to_Fatal_COVID-1,Progenitor (label),8000,,6,0.075
186
+ 202_B_GSE161918_Time-resolved_Systems_Immunology_Reveals_a_Late_Juncture_Linked_to_Fatal_COVID-1,Proliferating T (label),3547,,15,0.422892585283338
187
+ 202_B_GSE161918_Time-resolved_Systems_Immunology_Reveals_a_Late_Juncture_Linked_to_Fatal_COVID-1,ABC / DN2 B,600,,30,5.0
188
+ 202_B_GSE161918_Time-resolved_Systems_Immunology_Reveals_a_Late_Juncture_Linked_to_Fatal_COVID-1,GZMK+ CD8 T,911,,223,24.478594950603732
189
+ 202_B_GSE161918_Time-resolved_Systems_Immunology_Reveals_a_Late_Juncture_Linked_to_Fatal_COVID-1,Cytotoxic CD4 T,1805,,37,2.0498614958448753
190
+ 202_B_GSE161918_Time-resolved_Systems_Immunology_Reveals_a_Late_Juncture_Linked_to_Fatal_COVID-1,MS1 monocyte,2783,,830,29.82393100970176
191
+ 202_B_GSE161918_Time-resolved_Systems_Immunology_Reveals_a_Late_Juncture_Linked_to_Fatal_COVID-1,ISG-high monocyte,2783,,301,10.815666546891844
192
+ 202_B_GSE161918_Time-resolved_Systems_Immunology_Reveals_a_Late_Juncture_Linked_to_Fatal_COVID-1,Platelet-bound monocyte,2783,,19,0.6827164929931728
193
+ 202_B_GSE161918_Time-resolved_Systems_Immunology_Reveals_a_Late_Juncture_Linked_to_Fatal_COVID-1,Granulocyte-like (LDG),8000,,131,1.6375
194
+ 203_B_CELLxGENE_665714af_Ancestral_and_environmental_diversity_shape_the_immune_landscape_in_Indonesia,C1Q-high monocyte (reference),1089,,17,1.5610651974288339
195
+ 203_B_CELLxGENE_665714af_Ancestral_and_environmental_diversity_shape_the_immune_landscape_in_Indonesia,Plasmablast (label),8000,,49,0.6125
196
+ 203_B_CELLxGENE_665714af_Ancestral_and_environmental_diversity_shape_the_immune_landscape_in_Indonesia,Plasmablast (markers),919,,66,7.181719260065289
197
+ 203_B_CELLxGENE_665714af_Ancestral_and_environmental_diversity_shape_the_immune_landscape_in_Indonesia,Progenitor (label),8000,,0,0.0
198
+ 203_B_CELLxGENE_665714af_Ancestral_and_environmental_diversity_shape_the_immune_landscape_in_Indonesia,Proliferating T (label),5010,,9,0.17964071856287425
199
+ 203_B_CELLxGENE_665714af_Ancestral_and_environmental_diversity_shape_the_immune_landscape_in_Indonesia,ABC / DN2 B,919,,135,14.689880304678999
200
+ 203_B_CELLxGENE_665714af_Ancestral_and_environmental_diversity_shape_the_immune_landscape_in_Indonesia,GZMK+ CD8 T,1696,,251,14.799528301886792
201
+ 203_B_CELLxGENE_665714af_Ancestral_and_environmental_diversity_shape_the_immune_landscape_in_Indonesia,Cytotoxic CD4 T,1841,,17,0.9234111895708854
202
+ 203_B_CELLxGENE_665714af_Ancestral_and_environmental_diversity_shape_the_immune_landscape_in_Indonesia,MS1 monocyte,1089,,104,9.550045913682277
203
+ 203_B_CELLxGENE_665714af_Ancestral_and_environmental_diversity_shape_the_immune_landscape_in_Indonesia,ISG-high monocyte,1089,,75,6.887052341597796
204
+ 203_B_CELLxGENE_665714af_Ancestral_and_environmental_diversity_shape_the_immune_landscape_in_Indonesia,Platelet-bound monocyte,1089,,23,2.1120293847566574
205
+ 203_B_CELLxGENE_665714af_Ancestral_and_environmental_diversity_shape_the_immune_landscape_in_Indonesia,Granulocyte-like (LDG),8000,,37,0.4625
206
+ 204_B_CELLxGENE_cHSPC_aging_MDS_Human_circulating_hematopoietic_stem_and_progenitor_cells_in_aging_cytopenia_and,C1Q-high monocyte (reference),342,,2,0.5847953216374269
207
+ 204_B_CELLxGENE_cHSPC_aging_MDS_Human_circulating_hematopoietic_stem_and_progenitor_cells_in_aging_cytopenia_and,Plasmablast (label),8750,,4,0.045714285714285714
208
+ 204_B_CELLxGENE_cHSPC_aging_MDS_Human_circulating_hematopoietic_stem_and_progenitor_cells_in_aging_cytopenia_and,Plasmablast (markers),1856,,13,0.7004310344827587
209
+ 204_B_CELLxGENE_cHSPC_aging_MDS_Human_circulating_hematopoietic_stem_and_progenitor_cells_in_aging_cytopenia_and,Progenitor (label),8750,,5633,64.37714285714286
210
+ 204_B_CELLxGENE_cHSPC_aging_MDS_Human_circulating_hematopoietic_stem_and_progenitor_cells_in_aging_cytopenia_and,Proliferating T (label),807,,5,0.6195786864931846
211
+ 204_B_CELLxGENE_cHSPC_aging_MDS_Human_circulating_hematopoietic_stem_and_progenitor_cells_in_aging_cytopenia_and,ABC / DN2 B,1856,,210,11.314655172413794
212
+ 204_B_CELLxGENE_cHSPC_aging_MDS_Human_circulating_hematopoietic_stem_and_progenitor_cells_in_aging_cytopenia_and,GZMK+ CD8 T,8,,0,0.0
213
+ 204_B_CELLxGENE_cHSPC_aging_MDS_Human_circulating_hematopoietic_stem_and_progenitor_cells_in_aging_cytopenia_and,Cytotoxic CD4 T,784,,0,0.0
214
+ 204_B_CELLxGENE_cHSPC_aging_MDS_Human_circulating_hematopoietic_stem_and_progenitor_cells_in_aging_cytopenia_and,MS1 monocyte,342,,30,8.771929824561404
215
+ 204_B_CELLxGENE_cHSPC_aging_MDS_Human_circulating_hematopoietic_stem_and_progenitor_cells_in_aging_cytopenia_and,ISG-high monocyte,342,,43,12.573099415204679
216
+ 204_B_CELLxGENE_cHSPC_aging_MDS_Human_circulating_hematopoietic_stem_and_progenitor_cells_in_aging_cytopenia_and,Platelet-bound monocyte,342,,39,11.403508771929825
217
+ 204_B_CELLxGENE_cHSPC_aging_MDS_Human_circulating_hematopoietic_stem_and_progenitor_cells_in_aging_cytopenia_and,Granulocyte-like (LDG),8750,,143,1.6342857142857143
218
+ 300b_A_GSE132802_DRESS_DiHS_PBMC_only_scRNAseq,C1Q-high monocyte (reference),1084,,162,14.944649446494465
219
+ 300b_A_GSE132802_DRESS_DiHS_PBMC_only_scRNAseq,Plasmablast (label),8000,,69,0.8625
220
+ 300b_A_GSE132802_DRESS_DiHS_PBMC_only_scRNAseq,Plasmablast (markers),554,,68,12.274368231046932
221
+ 300b_A_GSE132802_DRESS_DiHS_PBMC_only_scRNAseq,Progenitor (label),8000,,14,0.175
222
+ 300b_A_GSE132802_DRESS_DiHS_PBMC_only_scRNAseq,Proliferating T (label),5745,,1226,21.34029590948651
223
+ 300b_A_GSE132802_DRESS_DiHS_PBMC_only_scRNAseq,ABC / DN2 B,554,,54,9.747292418772563
224
+ 300b_A_GSE132802_DRESS_DiHS_PBMC_only_scRNAseq,GZMK+ CD8 T,1301,,157,12.067640276710224
225
+ 300b_A_GSE132802_DRESS_DiHS_PBMC_only_scRNAseq,Cytotoxic CD4 T,2775,,5,0.18018018018018017
226
+ 300b_A_GSE132802_DRESS_DiHS_PBMC_only_scRNAseq,MS1 monocyte,1084,,238,21.95571955719557
227
+ 300b_A_GSE132802_DRESS_DiHS_PBMC_only_scRNAseq,ISG-high monocyte,1084,,79,7.287822878228782
228
+ 300b_A_GSE132802_DRESS_DiHS_PBMC_only_scRNAseq,Platelet-bound monocyte,1084,,14,1.2915129151291513
229
+ 300b_A_GSE132802_DRESS_DiHS_PBMC_only_scRNAseq,Granulocyte-like (LDG),8000,,129,1.6125
230
+ 301_A_GSE163121_SLE_healthy_Bcell_PBMC_scRNAseq,C1Q-high monocyte (reference),262,C1QC,0,0.0
231
+ 301_A_GSE163121_SLE_healthy_Bcell_PBMC_scRNAseq,Plasmablast (label),8000,,111,1.3875
232
+ 301_A_GSE163121_SLE_healthy_Bcell_PBMC_scRNAseq,Plasmablast (markers),6960,,125,1.7959770114942528
233
+ 301_A_GSE163121_SLE_healthy_Bcell_PBMC_scRNAseq,Progenitor (label),8000,,15,0.1875
234
+ 301_A_GSE163121_SLE_healthy_Bcell_PBMC_scRNAseq,Proliferating T (label),539,,1,0.18552875695732837
235
+ 301_A_GSE163121_SLE_healthy_Bcell_PBMC_scRNAseq,ABC / DN2 B,6960,,858,12.327586206896552
236
+ 301_A_GSE163121_SLE_healthy_Bcell_PBMC_scRNAseq,GZMK+ CD8 T,100,,4,4.0
237
+ 301_A_GSE163121_SLE_healthy_Bcell_PBMC_scRNAseq,Cytotoxic CD4 T,294,,0,0.0
238
+ 301_A_GSE163121_SLE_healthy_Bcell_PBMC_scRNAseq,MS1 monocyte,262,,63,24.045801526717558
239
+ 301_A_GSE163121_SLE_healthy_Bcell_PBMC_scRNAseq,ISG-high monocyte,262,,16,6.106870229007634
240
+ 301_A_GSE163121_SLE_healthy_Bcell_PBMC_scRNAseq,Platelet-bound monocyte,262,,16,6.106870229007634
241
+ 301_A_GSE163121_SLE_healthy_Bcell_PBMC_scRNAseq,Granulocyte-like (LDG),8000,,9,0.1125
242
+ 302_A_GSE314010_SLE_IL36_stim_PBMC_scRNAseq,C1Q-high monocyte (reference),1335,,76,5.692883895131086
243
+ 302_A_GSE314010_SLE_IL36_stim_PBMC_scRNAseq,Plasmablast (label),8000,,9,0.1125
244
+ 302_A_GSE314010_SLE_IL36_stim_PBMC_scRNAseq,Plasmablast (markers),747,,22,2.9451137884872827
245
+ 302_A_GSE314010_SLE_IL36_stim_PBMC_scRNAseq,Progenitor (label),8000,,3,0.0375
246
+ 302_A_GSE314010_SLE_IL36_stim_PBMC_scRNAseq,Proliferating T (label),5193,,3,0.057770075101097634
247
+ 302_A_GSE314010_SLE_IL36_stim_PBMC_scRNAseq,ABC / DN2 B,747,,66,8.835341365461847
248
+ 302_A_GSE314010_SLE_IL36_stim_PBMC_scRNAseq,GZMK+ CD8 T,1770,,247,13.954802259887005
249
+ 302_A_GSE314010_SLE_IL36_stim_PBMC_scRNAseq,Cytotoxic CD4 T,2254,,14,0.6211180124223602
250
+ 302_A_GSE314010_SLE_IL36_stim_PBMC_scRNAseq,MS1 monocyte,1335,,120,8.98876404494382
251
+ 302_A_GSE314010_SLE_IL36_stim_PBMC_scRNAseq,ISG-high monocyte,1335,,241,18.05243445692884
252
+ 302_A_GSE314010_SLE_IL36_stim_PBMC_scRNAseq,Platelet-bound monocyte,1335,,6,0.449438202247191
253
+ 302_A_GSE314010_SLE_IL36_stim_PBMC_scRNAseq,Granulocyte-like (LDG),8000,,44,0.55
254
+ 304_A_Parse_10M_PBMC_12donor_90cytokines,C1Q-high monocyte (reference),1371,,64,4.6681254558716265
255
+ 304_A_Parse_10M_PBMC_12donor_90cytokines,Plasmablast (label),8000,,47,0.5875
256
+ 304_A_Parse_10M_PBMC_12donor_90cytokines,Plasmablast (markers),858,,9,1.048951048951049
257
+ 304_A_Parse_10M_PBMC_12donor_90cytokines,Progenitor (label),8000,,44,0.55
258
+ 304_A_Parse_10M_PBMC_12donor_90cytokines,Proliferating T (label),5107,,65,1.2727628744859996
259
+ 304_A_Parse_10M_PBMC_12donor_90cytokines,ABC / DN2 B,858,,139,16.2004662004662
260
+ 304_A_Parse_10M_PBMC_12donor_90cytokines,GZMK+ CD8 T,1295,,61,4.710424710424711
261
+ 304_A_Parse_10M_PBMC_12donor_90cytokines,Cytotoxic CD4 T,2711,,1,0.03688675765400221
262
+ 304_A_Parse_10M_PBMC_12donor_90cytokines,MS1 monocyte,1371,,27,1.9693654266958425
263
+ 304_A_Parse_10M_PBMC_12donor_90cytokines,ISG-high monocyte,1371,,961,70.09482129832239
264
+ 304_A_Parse_10M_PBMC_12donor_90cytokines,Platelet-bound monocyte,1371,GP9,10,0.7293946024799417
265
+ 304_A_Parse_10M_PBMC_12donor_90cytokines,Granulocyte-like (LDG),8000,CAMP LCN2,8,0.1
paper-releases/pbisc-diffusion/updates/20261004T165054Z-rare-states-screen/diffusion/dataset/server_1/model8/plans/rare_states_screen_20261004/out/v1_provisional_markers/corpus_stdout.txt ADDED
@@ -0,0 +1,45 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ state ABC / DN2 B C1Q-high monocyte (reference) Cytotoxic CD4 T GZMK+ CD8 T Granulocyte-like (LDG) ISG-high monocyte MS1 monocyte Plasmablast (label) Plasmablast (markers) Platelet-bound monocyte Progenitor (label) Proliferating T (label)
2
+ short
3
+ 001_A_collection_436154da-bcf1-4130-9c8b 2.86 1.72 1.17 19.00 0.37 13.39 7.71 0.16 1.11 3.68 0.06 1.19
4
+ 005_A_collection_dde06e0f-ab3b-46be-96a2 3.69 1.97 1.75 23.30 0.16 6.23 9.84 0.31 3.01 3.93 0.16 0.97
5
+ 006_A_collection_ced320a1-29f3-47c1-a735 14.73 2.41 1.43 23.19 0.97 12.88 14.37 0.00 6.52 1.70 0.00 0.21
6
+ 007_A_collection_e1a9ca56-f2ee-435d-980a 0.86 0.41 0.00 6.03 0.01 1.09 0.54 0.04 0.00 0.00 0.02 0.19
7
+ 009_A_Human_Immune_Health_Atlas_Human_Im 10.71 0.99 0.77 27.63 1.34 16.49 19.01 0.09 1.76 1.68 0.12 0.52
8
+ 010_A_collection_4a9fd4d7-d870-4265-89a5 26.33 0.40 0.00 13.06 0.81 4.09 0.74 0.16 0.39 0.34 0.08 1.19
9
+ 053_B_collection_b0cf0afa-ec40-4d65-b570 24.59 2.69 3.41 20.74 4.40 34.97 28.90 0.25 7.42 5.54 0.15 0.60
10
+ 058_B_collection_eb735cc9-d0a7-48fa-b255 10.28 2.61 1.01 19.22 1.94 11.52 27.25 1.16 12.53 7.56 0.39 2.64
11
+ 061_A_GSE274680_Savage_Allen_RA_at-risk_ 11.48 1.40 1.17 30.28 1.71 11.21 19.49 0.06 3.07 3.87 0.06 0.57
12
+ 065_A_GSE271896_GSE271896_Sound_Life_dee 8.78 0.83 0.35 16.37 2.30 20.81 22.98 0.00 1.22 1.17 0.10 0.96
13
+ 071_C_JDM_CITE-seq_PBMC_CELLxGENE_JDM_CI 13.06 0.32 0.35 4.42 1.27 24.07 25.18 0.34 4.16 5.00 0.14 0.59
14
+ 074_A_COMBAT_CELLxGENE_collection_COMBAT 8.87 3.82 1.05 29.22 2.40 28.84 34.98 1.19 19.22 0.12 0.20 4.41
15
+ 081_B_Single-cell_atlas_of_peripheral_im 8.30 0.69 0.43 2.75 2.31 35.24 19.20 2.35 16.85 2.51 0.30 6.71
16
+ 093_C_Local_and_systemic_SARS-CoV-2_resp 9.80 2.34 0.30 13.97 0.68 21.69 13.51 0.46 4.51 3.58 0.32 0.36
17
+ 200_A_GSE275067_Immunobiology_of_Aging_C NaN 1.19 1.57 14.71 2.33 28.40 20.36 0.00 NaN 4.27 0.12 2.23
18
+ 202_B_GSE161918_Time-resolved_Systems_Im 5.00 1.94 2.05 24.48 1.64 10.82 29.82 0.24 3.50 0.68 0.08 0.42
19
+ 203_B_CELLxGENE_665714af_Ancestral_and_e 14.69 1.56 0.92 14.80 0.46 6.89 9.55 0.61 7.18 2.11 0.00 0.18
20
+ 204_B_CELLxGENE_cHSPC_aging_MDS_Human_ci 11.31 0.58 0.00 0.00 1.63 12.57 8.77 0.05 0.70 11.40 64.38 0.62
21
+ 300b_A_GSE132802_DRESS_DiHS_PBMC_only_sc 9.75 14.94 0.18 12.07 1.61 7.29 21.96 0.86 12.27 1.29 0.18 21.34
22
+ 301_A_GSE163121_SLE_healthy_Bcell_PBMC_s 12.33 0.00 0.00 4.00 0.11 6.11 24.05 1.39 1.80 6.11 0.19 0.19
23
+ 302_A_GSE314010_SLE_IL36_stim_PBMC_scRNA 8.84 5.69 0.62 13.95 0.55 18.05 8.99 0.11 2.95 0.45 0.04 0.06
24
+ 304_A_Parse_10M_PBMC_12donor_90cytokines 16.20 4.67 0.04 4.71 0.10 70.09 1.97 0.59 1.05 0.73 0.55 1.27
25
+ state_cells parent_cells pct
26
+ state
27
+ ABC / DN2 B 2940 24494 12.003
28
+ C1Q-high monocyte (reference) 808 32766 2.466
29
+ Cytotoxic CD4 T 435 47390 0.918
30
+ GZMK+ CD8 T 4274 25675 16.647
31
+ Granulocyte-like (LDG) 2357 179750 1.311
32
+ ISG-high monocyte 6664 32766 20.338
33
+ MS1 monocyte 6227 32766 19.004
34
+ Plasmablast (label) 837 179750 0.466
35
+ Plasmablast (markers) 967 24494 3.948
36
+ Platelet-bound monocyte 902 32766 2.753
37
+ Progenitor (label) 5896 179750 3.280
38
+ Proliferating T (label) 2245 93391 2.404
39
+ dataset_id state missing_genes
40
+ 007_A_collection_e1a9ca56-f2ee-435d-980a-4f49ab7a95_Miao_et_al._RA_PBMC_disease_activity-associated_PBMC_subsets Platelet-bound monocyte PPBP PF4
41
+ 007_A_collection_e1a9ca56-f2ee-435d-980a-4f49ab7a95_Miao_et_al._RA_PBMC_disease_activity-associated_PBMC_subsets Granulocyte-like (LDG) MPO
42
+ 010_A_collection_4a9fd4d7-d870-4265-89a5-ad51ab811d_ScaleBio_single-cell_RNA_sequencing_of_human_PBMCs Granulocyte-like (LDG) LCN2
43
+ 301_A_GSE163121_SLE_healthy_Bcell_PBMC_scRNAseq C1Q-high monocyte (reference) C1QC
44
+ 304_A_Parse_10M_PBMC_12donor_90cytokines Platelet-bound monocyte GP9
45
+ 304_A_Parse_10M_PBMC_12donor_90cytokines Granulocyte-like (LDG) CAMP LCN2