Archive 4 checkpoints (1-4)

paper-releases/pbisc-diffusion/updates/20261001T200638Z-extra-realism-metrics/diffusion/dataset/server_1/model8/plans/paired_finetune_intradataset_20260927/scores_extra/ji2025_chili/fewshot_n5/draw0/en.csv

@@ -0,0 +1,25 @@
+dataset,design,unit,set,cellset,distance,n_samples,n_cells_real,n_cells_gen,n_pcs,lb,ub,dif_mean,en,lb_exact,lb_queries,n_representative_rows,en_reps_at_lb,seconds
+ji2025_chili,fewshot,draw0,real_R2,pc,sq,25,3750,3750,100,234.5949385716076,360.52551899805655,261.4230914394562,0.21303922190303765,True,"[3750, 3750]",,,5.1
+ji2025_chili,fewshot,draw0,real_R2,pc,l2,25,3750,3750,100,15.03428927590997,18.461255392295552,15.822065958160511,0.22987583054407573,True,"[3750, 3750]",,,5.1
+ji2025_chili,fewshot,draw0,real_R2,all,sq,25,44832,44847,100,180.55910212425454,264.0395482825222,186.78850171907266,0.07462106255407423,False,"[20000, 20000]",,,13.2
+ji2025_chili,fewshot,draw0,real_R2,all,l2,25,44832,44847,100,13.258049220384555,16.022488792970538,13.461331216987535,0.07353461389384644,False,"[20000, 20000]",,,13.2
+ji2025_chili,fewshot,draw0,zs_raw,pc,sq,25,3750,3750,100,327.5671008815902,292.2114750358133,853.6599126651116,-14.880031089772418,True,"[3750, 3750]",,,6.3
+ji2025_chili,fewshot,draw0,zs_raw,pc,l2,25,3750,3750,100,17.46693938676861,16.52076770049972,28.746640128845364,-11.92141014762013,True,"[3750, 3750]",,,6.3
+ji2025_chili,fewshot,draw0,zs_raw,all,sq,25,89679,37500,100,209.18081392175156,226.30381227471398,642.0648717546115,25.28085612751155,False,"[20000, 20000]",,,17.2
+ji2025_chili,fewshot,draw0,zs_raw,all,l2,25,89679,37500,100,14.089766073498051,14.791420732930153,25.014922496571334,15.57056064006727,False,"[20000, 20000]",,,17.2
+ji2025_chili,fewshot,draw0,zs_cal,pc,sq,25,3750,3750,100,283.9856328818703,316.33452928971025,662.320672709846,11.695454307253703,True,"[3750, 3750]",,,6.5
+ji2025_chili,fewshot,draw0,zs_cal,pc,l2,25,3750,3750,100,16.427604052363094,17.236309258510392,25.312918304578087,10.987086746411542,True,"[3750, 3750]",,,6.5
+ji2025_chili,fewshot,draw0,zs_cal,all,sq,25,89679,37500,100,195.04473284556252,235.40204171367807,530.6445974089735,8.315714649361889,False,"[20000, 20000]",,,18.8
+ji2025_chili,fewshot,draw0,zs_cal,all,l2,25,89679,37500,100,13.706819240512361,15.096209464537656,22.747005459293664,6.506585451990858,False,"[20000, 20000]",,,18.8
+ji2025_chili,fewshot,draw0,lora5,pc,sq,25,3750,3750,100,270.45372859627724,340.3414542530583,425.6684195938395,2.220914896555974,True,"[3750, 3750]",,,5.9
+ji2025_chili,fewshot,draw0,lora5,pc,l2,25,3750,3750,100,16.160468293869755,17.93524853430864,20.251641023586537,2.3051714440459814,True,"[3750, 3750]",,,5.9
+ji2025_chili,fewshot,draw0,lora5,all,sq,25,89679,37500,100,194.16461117525674,244.979660466692,316.9096221386486,2.415524783995048,False,"[20000, 20000]",,,16.8
+ji2025_chili,fewshot,draw0,lora5,all,l2,25,89679,37500,100,13.737392259677591,15.422826824455894,17.547101417151282,2.260372035253002,False,"[20000, 20000]",,,16.8
+ji2025_chili,fewshot,draw0,zs_pseudo,pc,sq,25,3750,3750,100,220.99897407143308,356.869247167173,369.40895091569365,1.0922917387505702,True,"[3750, 3750]",,,8.1
+ji2025_chili,fewshot,draw0,zs_pseudo,pc,l2,25,3750,3750,100,14.511352835462773,18.367602512229777,18.81901499890492,1.117059973941728,True,"[3750, 3750]",,,8.1
+ji2025_chili,fewshot,draw0,zs_pseudo,all,sq,25,89679,37500,100,169.96576809405929,247.53244990767004,290.604787322639,1.5552943146191283,False,"[20000, 20000]",,,22.8
+ji2025_chili,fewshot,draw0,zs_pseudo,all,l2,25,89679,37500,100,12.831156457093346,15.508918035743877,16.76631931081726,1.4695717815575857,False,"[20000, 20000]",,,22.8
+ji2025_chili,fewshot,draw0,scsemi5,pc,sq,25,3750,3750,100,167.31819169766078,355.97770084597227,599.1861677983516,2.2891397208140996,True,"[3750, 3750]",8.0,1.7341967581924997,6.3
+ji2025_chili,fewshot,draw0,scsemi5,pc,l2,25,3750,3750,100,12.103463780503095,18.304947203774276,23.824899522314325,1.8901019226829385,True,"[3750, 3750]",8.0,1.4318953959719232,6.3
+ji2025_chili,fewshot,draw0,scsemi5,all,sq,25,89679,37500,100,143.17034627680644,240.36931648800194,548.7425536732404,4.172597780770723,False,"[20000, 20000]",8.0,3.1610589248263055,20.7
+ji2025_chili,fewshot,draw0,scsemi5,all,l2,25,89679,37500,100,11.462040521426669,15.254312763410454,22.755569302214795,2.97803745621394,False,"[20000, 20000]",8.0,2.2560889819802576,20.7

paper-releases/pbisc-diffusion/updates/20261001T200638Z-extra-realism-metrics/diffusion/dataset/server_1/model8/plans/paired_finetune_intradataset_20260927/scores_extra/ji2025_chili/fewshot_n5/draw0/en_per_sample.csv

@@ -0,0 +1,601 @@
+dataset,design,unit,set,cellset,distance,donor,n_real,n_gen,partner,dif,en_i
+ji2025_chili,fewshot,draw0,real_R2,pc,sq,N064_TOL,150,150,N136_FU1,351.39026737400087,0.9274580360614535
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+ji2025_chili,fewshot,draw0,real_R2,pc,sq,N136_TOL,150,150,N064_FU1,200.49994307559896,-0.2707443686874942
+ji2025_chili,fewshot,draw0,real_R2,pc,sq,N136_FU1,150,150,N128_AC,176.09509680205917,-0.4645403965537652
+ji2025_chili,fewshot,draw0,real_R2,pc,sq,N128_BC,150,150,N043_TOL,256.03228760578486,0.1702314796102918
+ji2025_chili,fewshot,draw0,real_R2,pc,sq,N128_AC,150,150,N147_TOL,246.846145933855,0.0972854037578494
+ji2025_chili,fewshot,draw0,real_R2,pc,sq,N129_BC,150,150,N001_FU1,246.40299980287696,0.09376643219846019
+ji2025_chili,fewshot,draw0,real_R2,pc,sq,N129_AC,150,150,N064_TOL,276.19907601425973,0.33037358600083205
+ji2025_chili,fewshot,draw0,real_R2,pc,sq,N147_TOL,150,150,N136_FU1,194.16364667092301,-0.32106015682425043
+ji2025_chili,fewshot,draw0,real_R2,pc,sq,N158_AC,150,150,N022_FU1,269.6730851751595,0.2785514565625276
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+ji2025_chili,fewshot,draw0,real_R2,pc,sq,N001_TOL,150,150,N055_AC,334.6344238517612,0.7944018437887109
+ji2025_chili,fewshot,draw0,real_R2,pc,sq,N001_FU1,150,150,N002_FU1,274.56087181057404,0.3173647981580531
+ji2025_chili,fewshot,draw0,real_R2,pc,sq,N002_TOL,150,150,N001_TOL,299.7247983452341,0.5171885935336116
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paper-releases/pbisc-diffusion/updates/20261001T200638Z-extra-realism-metrics/diffusion/dataset/server_1/model8/plans/paired_finetune_intradataset_20260927/scores_extra/ji2025_chili/fewshot_n5/draw0/manifest.json

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+ "code_sha256": {
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+  "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/tools/score_ft.py": "ec5f40b4cea6d5062d0138f3b934abb6465e34cbfeac869c8a0906924c033aec",
+  "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/umap/cell_immicro_5arm/tools/stage_b_embed.py": "d056cfdf38fb0e5f478756f370174e993b75d0c973c48e02e21749175a4ca2da"
+ },
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+ "max_abs_diff_k10_pooled": 0.0,
+ "extra_metrics_py_sha256_ran": "b65e022452d8fccbd2e9b349265d54d3833faf1876dbfd753cf0279678d02671",
+ "code_sha256_note": "code_sha256 was hashed when the unit finished; extra_metrics_py_sha256_ran is the file the process loaded at start (scores_extra/_code/). v1-v3 differ only in the collector and the per-unit lock; metric code identical (scores_extra/_code/README.md)"
+}

paper-releases/pbisc-diffusion/updates/20261001T200638Z-extra-realism-metrics/diffusion/dataset/server_1/model8/plans/paired_finetune_intradataset_20260927/scores_extra/ji2025_chili/fewshot_n5/draw0/metrics.csv

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+dataset,design,unit,label,set,real_side,mode,n_real,n_gen,precision_k3,coverage_k3,density_k3,expected_coverage_identical_k3,precision_k5,coverage_k5,density_k5,expected_coverage_identical_k5,precision_k10,coverage_k10,density_k10,expected_coverage_identical_k10,c2st_knn_auc,c2st_knn_auc_sd,c2st_rf_auc,c2st_rf_auc_sd,nn1_acc,nn1_acc_real,nn1_acc_gen,mmd2_bw0.5,mmd2_bw1,mmd2_bw2,mmd2_sum,mmd_bandwidth_m,seconds
+ji2025_chili,fewshot,draw0,Real vs real control (held-out real cells),real_R2,R1,raw,3750,3750,0.9672,0.9754666666666667,2.9320888888888885,0.8751000066648876,0.9853333333333333,0.9976,2.77216,0.9688124833222179,0.996,1.0,2.5373333333333337,0.9990305827327067,0.5564942222222223,0.016849847858052217,0.8082113777777777,0.005428910825443474,0.5381333333333334,0.25066666666666665,0.8256,0.0016776316833038152,0.00028428082762732565,3.626076674478895e-07,0.0019622751185985887,29.4490755924502,8.6
+ji2025_chili,fewshot,draw0,Real vs real control (held-out real cells),real_R2,R1,dm,3750,3750,0.9653333333333334,0.9776,2.8852444444444445,0.8751000066648876,0.9829333333333333,0.9968,2.714666666666667,0.9688124833222179,0.9957333333333334,1.0,2.4922666666666666,0.9990305827327067,0.5540437333333333,0.016274226942554825,0.8043882666666666,0.004993334357909225,0.5348,0.2536,0.816,0.0015366340414154633,0.0002441618126782785,-4.869140961094587e-06,0.0017759267131326473,29.4490755924502,8.8
+ji2025_chili,fewshot,draw0,Real vs real control (out-of-sample: R2 vs R3),real_R3,R2,raw,3750,3750,,,,,,,,,,,,,0.48831591111111106,0.0068002658655361035,0.4993159111111112,0.011679845265337328,0.4996,0.5032,0.496,0.0001240227148369133,0.00012197433889915565,4.345111554493464e-05,0.0002894481692810036,29.4490755924502,7.5
+ji2025_chili,fewshot,draw0,Real vs real control (out-of-sample: R2 vs R3),real_R3,R2,dm,3750,3750,,,,,,,,,,,,,0.49235964444444447,0.007782233811781475,0.4979104,0.013609378689204416,0.5069333333333333,0.5125333333333333,0.5013333333333333,7.362623992179795e-05,8.271984301400082e-05,2.8689483933419524e-05,0.0001850355668692183,29.4490755924502,7.4
+ji2025_chili,fewshot,draw0,"Zero-shot, real bulk",zs_raw,R1,raw,3750,3750,0.364,0.030933333333333334,0.2246222222222222,0.8751000066648876,0.44133333333333336,0.04426666666666667,0.21168,0.9688124833222179,0.7957333333333333,0.07013333333333334,0.5399200000000001,0.9990305827327067,0.9960766222222223,0.002072862149627441,0.9996700444444444,0.00015651816444896074,0.9906666666666667,0.9832,0.9981333333333333,0.2963913165427508,0.2696807910826615,0.09860203445644378,0.664674142081856,29.4490755924502,5.5
+ji2025_chili,fewshot,draw0,"Zero-shot, real bulk",zs_raw,R1,dm,3750,3750,0.212,0.09466666666666666,0.12151111111111111,0.8751000066648876,0.28933333333333333,0.13706666666666667,0.12277333333333333,0.9688124833222179,0.43893333333333334,0.22266666666666668,0.14338666666666666,0.9990305827327067,0.9944595555555555,0.0020710052428832065,0.9968499555555557,0.0009478572377789266,0.9758666666666667,0.9642666666666667,0.9874666666666667,0.1845277428635026,0.1363510007014883,0.046722907835058614,0.3676016514000495,29.4490755924502,5.5
+ji2025_chili,fewshot,draw0,"Zero-shot, real bulk",zs_raw,R2,raw,3750,3750,,,,,,,,,,,,,0.9982115555555555,0.0007555673201698676,0.9996508444444444,0.00026626888850872157,0.9946666666666667,0.992,0.9973333333333333,0.31399843219461343,0.2736780622305919,0.09894263984738627,0.6866191342725916,29.4490755924502,5.0
+ji2025_chili,fewshot,draw0,"Zero-shot, real bulk",zs_raw,R2,dm,3750,3750,,,,,,,,,,,,,0.9958447999999999,0.0010009805760253932,0.9969048888888888,0.0005501184608679353,0.9782666666666666,0.9728,0.9837333333333333,0.19194619217021164,0.13910569314442722,0.04739263801294724,0.3784445233275861,29.4490755924502,5.4
+ji2025_chili,fewshot,draw0,Zero-shot + calibration,zs_cal,R1,raw,3750,3750,0.36693333333333333,0.0464,0.2129777777777778,0.8751000066648876,0.47413333333333335,0.06346666666666667,0.20442666666666667,0.9688124833222179,0.7410666666666667,0.10586666666666666,0.35370666666666667,0.9990305827327067,0.9953770666666666,0.0018376764072539134,0.9994179555555555,0.00020795004148374915,0.9874666666666667,0.9770666666666666,0.9978666666666667,0.214269290256472,0.13226322796353807,0.04195471884066815,0.3884872370606782,29.4490755924502,6.3
+ji2025_chili,fewshot,draw0,Zero-shot + calibration,zs_cal,R1,dm,3750,3750,0.3602666666666667,0.16106666666666666,0.21848888888888887,0.8751000066648876,0.4832,0.2312,0.22496,0.9688124833222179,0.6773333333333333,0.36186666666666667,0.26557333333333333,0.9990305827327067,0.9927440000000001,0.002344132807091807,0.9941662222222221,0.0005036440051768654,0.9572,0.9298666666666666,0.9845333333333334,0.09416920606822599,0.046540368456006176,0.014050423894105712,0.15475999841833787,29.4490755924502,6.1
+ji2025_chili,fewshot,draw0,Zero-shot + calibration,zs_cal,R2,raw,3750,3750,,,,,,,,,,,,,0.9977616000000001,0.0011235171231120525,0.9994890666666667,0.0002569353283668566,0.9930666666666667,0.9885333333333334,0.9976,0.2192879586598938,0.13168943897263286,0.04163766578104133,0.392615063413568,29.4490755924502,5.6
+ji2025_chili,fewshot,draw0,Zero-shot + calibration,zs_cal,R2,dm,3750,3750,,,,,,,,,,,,,0.9940975999999999,0.0024426350798539905,0.9944094222222223,0.0012708044074424552,0.9588,0.9408,0.9768,0.09406841361207796,0.046100432658269686,0.013906065675659995,0.15407491194600764,29.4490755924502,5.7
+ji2025_chili,fewshot,draw0,"LoRA, 5 donors",lora5,R1,raw,3750,3750,0.8194666666666667,0.4544,1.1894222222222222,0.8751000066648876,0.8965333333333333,0.5552,1.1594133333333334,0.9688124833222179,0.9712,0.6992,1.16496,0.9990305827327067,0.9484069333333334,0.008870713115097942,0.9712030222222223,0.002654274286904688,0.8568,0.7536,0.96,0.07370376724365846,0.04047290972741435,0.011849046732044899,0.1260257237031177,29.4490755924502,6.6
+ji2025_chili,fewshot,draw0,"LoRA, 5 donors",lora5,R1,dm,3750,3750,0.8266666666666667,0.6866666666666666,1.2106666666666668,0.8751000066648876,0.904,0.8136,1.2242133333333334,0.9688124833222179,0.9709333333333333,0.9346666666666666,1.25664,0.9990305827327067,0.8981468444444445,0.011635925626913457,0.9276149333333332,0.003859422455353711,0.7649333333333334,0.6133333333333333,0.9165333333333333,0.025498305188527026,0.0120890567134051,0.003562174257349726,0.04114953615928185,29.4490755924502,5.9
+ji2025_chili,fewshot,draw0,"LoRA, 5 donors",lora5,R2,raw,3750,3750,,,,,,,,,,,,,0.9618504888888889,0.005098023258644324,0.9598609777777778,0.004661576593364326,0.8806666666666667,0.8674666666666667,0.8938666666666667,0.06978090349116262,0.038438643272748596,0.01149430906348714,0.11971385582739835,29.4490755924502,5.5
+ji2025_chili,fewshot,draw0,"LoRA, 5 donors",lora5,R2,dm,3750,3750,,,,,,,,,,,,,0.9010431999999999,0.00366997386743483,0.9202627555555557,0.0034207936181210583,0.79,0.7429333333333333,0.8370666666666666,0.023731177106905865,0.011801322081586685,0.0035896301629871896,0.03912212935147974,29.4490755924502,5.5
+ji2025_chili,fewshot,draw0,"Zero-shot, sc pseudobulk input (reference)",zs_pseudo,R1,raw,3750,3750,0.9162666666666667,0.5141333333333333,2.394488888888889,0.8751000066648876,0.9544,0.6197333333333334,2.3692266666666666,0.9688124833222179,0.9869333333333333,0.752,2.36312,0.9990305827327067,0.9306944000000001,0.005055640571690503,0.9803818666666665,0.003926662596992131,0.8405333333333334,0.6925333333333333,0.9885333333333334,0.05486394070463807,0.02612367619937417,0.007687943936373953,0.08867556084038619,29.4490755924502,6.9
+ji2025_chili,fewshot,draw0,"Zero-shot, sc pseudobulk input (reference)",zs_pseudo,R1,dm,3750,3750,0.9074666666666666,0.5541333333333334,2.1453333333333333,0.8751000066648876,0.952,0.6693333333333333,2.1536,0.9688124833222179,0.9797333333333333,0.7978666666666666,2.1787466666666666,0.9990305827327067,0.9255770666666667,0.010228441980243598,0.9761889777777778,0.0021756816760628364,0.8272,0.6736,0.9808,0.04600270258807826,0.022569345013425446,0.006944430874820773,0.07551647847632448,29.4490755924502,6.4
+ji2025_chili,fewshot,draw0,"Zero-shot, sc pseudobulk input (reference)",zs_pseudo,R2,raw,3750,3750,,,,,,,,,,,,,0.9591560888888889,0.0064682078224627265,0.9766126222222222,0.0030124103076653004,0.8908,0.8224,0.9592,0.04840965150068144,0.024302243676893376,0.00747421395681358,0.0801861091343884,29.4490755924502,5.6
+ji2025_chili,fewshot,draw0,"Zero-shot, sc pseudobulk input (reference)",zs_pseudo,R2,dm,3750,3750,,,,,,,,,,,,,0.9513231999999998,0.004535020148048943,0.9746570666666665,0.003130459416447452,0.8753333333333333,0.7944,0.9562666666666667,0.04228491863992856,0.021784662240573294,0.0069112992222917224,0.07098088010279358,29.4490755924502,5.2
+ji2025_chili,fewshot,draw0,"scSemiProfiler, 5 donors",scsemi5,R1,raw,3750,3750,0.49493333333333334,0.08026666666666667,0.3604444444444444,0.8751000066648876,0.6058666666666667,0.1056,0.3522666666666667,0.9688124833222179,0.7970666666666667,0.15173333333333333,0.38008000000000003,0.9990305827327067,0.9927342222222221,0.0010162983911003178,0.9992403555555557,0.00039429391807025284,0.9801333333333333,0.9610666666666666,0.9992,0.26341639365820263,0.16380831428460096,0.05375196147325467,0.48097666941605827,29.4490755924502,6.2
+ji2025_chili,fewshot,draw0,"scSemiProfiler, 5 donors",scsemi5,R1,dm,3750,3750,0.3312,0.0632,0.24,0.8751000066648876,0.46853333333333336,0.0928,0.2647466666666667,0.9688124833222179,0.6842666666666667,0.14853333333333332,0.26832,0.9990305827327067,0.9956522666666666,0.002462331437609883,0.999176,0.000342879023405304,0.9874666666666667,0.9776,0.9973333333333333,0.21907131050031814,0.126741431251703,0.04066497409339087,0.386477715845412,29.4490755924502,6.0
+ji2025_chili,fewshot,draw0,"scSemiProfiler, 5 donors",scsemi5,R2,raw,3750,3750,,,,,,,,,,,,,0.9965402666666666,0.002197691394774745,0.9990206222222222,0.0005837450483571476,0.9898666666666667,0.9810666666666666,0.9986666666666667,0.268651839635808,0.16355561125208307,0.053355352450627835,0.4855628033385189,29.4490755924502,5.5
+ji2025_chili,fewshot,draw0,"scSemiProfiler, 5 donors",scsemi5,R2,dm,3750,3750,,,,,,,,,,,,,0.9963407999999999,0.0013173719592477768,0.9992592,0.0002766413018270804,0.9890666666666666,0.9805333333333334,0.9976,0.2201369307259966,0.12642904652690423,0.04049569812739251,0.38706167538029335,29.4490755924502,5.5