Archive 4 checkpoints (1-4)

paper-releases/pbisc-diffusion/updates/20261008T050202Z-scsemi-imperial-deck/diffusion/dataset/server_1/model8/plans/paired_finetune_intradataset_20260927/logs/extra-imperial-scsemi-cv_20261008T134836.log

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+JOB_START 2026-10-08T13:48:36+09:00 --design scored --dataset imperial_eskd --score-dir scores/imperial_eskd/scsemi_cv_20261002/pooled --arms scsemi__raw --unit scsemi_cv_20261002/pooled --threads 8
+13:48:37 imperial_eskd scored : 157 scored samples; fitting the scorer's view
+13:48:45 bandwidth m (median pairwise distance of R1, PCA-50) = 25.6056
+13:48:51 observed cells: 514260 in 157 samples; R1/R2 rebuilt = reference.npz; R3 22750 cells (7 samples with fewer than n)
+13:50:31   real_R2 [R1 raw] P/C k10 0.9673/0.9997 k5 0.9105/0.9849 k3 0.8372/0.9158 | AUC knn 0.505 rf 0.557 | 1-NN 0.503 | MMD2 -0.0000 (65.9 s)
+13:51:37   real_R2 [R1 dm] P/C k10 0.9667/0.9997 k5 0.9101/0.9837 k3 0.8357/0.9159 | AUC knn 0.503 rf 0.550 | 1-NN 0.506 | MMD2 -0.0000 (65.8 s)
+13:52:35   real_R3 [R2 raw] AUC knn 0.496 rf 0.504 | 1-NN 0.499 | MMD2 -0.0000 (55.5 s)
+13:53:31   real_R3 [R2 dm] AUC knn 0.495 rf 0.499 | 1-NN 0.499 | MMD2 -0.0000 (56.0 s)
+13:53:45   real_R2 E_N[pc] sq 0.2346 (LB 187.090 UB 334.937 Dif 221.780) l2 0.2525 (13.4 s)
+13:54:55   real_R2 E_N[all] sq 0.2788 (LB 153.636 UB 269.158 Dif 185.848) l2 0.2990 (52.7 s)
+13:55:11 scsemi__raw: scsemi__raw.npz sha 1f9359538bb9 (receipt verified), 235500 scored cells, 23482 in the P/C subsample (same rows as the scorer)
+13:56:04   scsemi__raw [R1 raw] P/C k10 0.3478/0.0823 k5 0.1958/0.0518 k3 0.1233/0.0362 | AUC knn 0.999 rf 1.000 | 1-NN 0.991 | MMD2 0.1310 (51.6 s)
+13:56:59   scsemi__raw [R1 dm] P/C k10 0.4152/0.1380 k5 0.2806/0.0883 k3 0.2016/0.0609 | AUC knn 0.997 rf 1.000 | 1-NN 0.986 | MMD2 0.1160 (54.1 s)
+13:57:47   scsemi__raw [R2 raw] AUC knn 0.999 rf 1.000 | 1-NN 0.993 | MMD2 0.1308 (46.4 s)
+13:58:37   scsemi__raw [R2 dm] AUC knn 0.997 rf 1.000 | 1-NN 0.987 | MMD2 0.1161 (49.3 s)
+13:58:51   scsemi__raw E_N[pc] sq 1.5654 (LB 149.760 UB 324.247 Dif 422.901) l2 1.4678 (14.3 s)
+14:00:00   scsemi__raw E_N[all] sq 1.9300 (LB 126.402 UB 255.196 Dif 374.972) l2 1.7012 (68.3 s)
+14:00:00 scsemi__raw done in 305 s
+14:00:00 unit scsemi_cv_20261002/pooled of imperial_eskd written to /home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores_extra/imperial_eskd/scsemi_cv_20261002/pooled in 683.5 s (k=10 max |diff| vs scorer 0.00e+00)
+JOB_EXIT 0 684s --design scored --dataset imperial_eskd --score-dir scores/imperial_eskd/scsemi_cv_20261002/pooled --arms scsemi__raw --unit scsemi_cv_20261002/pooled --threads 8
+UNIT_EXIT 0

paper-releases/pbisc-diffusion/updates/20261008T050202Z-scsemi-imperial-deck/diffusion/dataset/server_1/model8/plans/paired_finetune_intradataset_20260927/logs/finalize_scsemi_cv_imperial_server1_20261008T134614.log

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+scoring 2 arg(s) -> /home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/imperial_eskd/scsemi_cv_20261002/fold0
+Running as unit: ftscore-score-imperial_eskd-scsemi_cv_20261002-f0-20261008T134614.service; invocation ID: a6b7365ace9e4b83affbe89a0b609bf5
+unit=ftscore-score-imperial_eskd-scsemi_cv_20261002-f0-20261008T134614 log=/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/logs/score-imperial_eskd-scsemi_cv_20261002-f0_20261008T134614.log
+unit ftscore-score-imperial_eskd-scsemi_cv_20261002-f0-20261008T134614 finished rc=0
+scoring 2 arg(s) -> /home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/imperial_eskd/scsemi_cv_20261002/fold1
+Running as unit: ftscore-score-imperial_eskd-scsemi_cv_20261002-f1-20261008T134637.service; invocation ID: 41b0537dbdb541b4aea9c5b140027472
+unit=ftscore-score-imperial_eskd-scsemi_cv_20261002-f1-20261008T134637 log=/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/logs/score-imperial_eskd-scsemi_cv_20261002-f1_20261008T134637.log
+unit ftscore-score-imperial_eskd-scsemi_cv_20261002-f1-20261008T134637 finished rc=0
+scoring 2 arg(s) -> /home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/imperial_eskd/scsemi_cv_20261002/fold2
+Running as unit: ftscore-score-imperial_eskd-scsemi_cv_20261002-f2-20261008T134650.service; invocation ID: ab8d806ac82c48469829aca6900905b6
+unit=ftscore-score-imperial_eskd-scsemi_cv_20261002-f2-20261008T134650 log=/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/logs/score-imperial_eskd-scsemi_cv_20261002-f2_20261008T134650.log
+unit ftscore-score-imperial_eskd-scsemi_cv_20261002-f2-20261008T134650 finished rc=0
+scoring 2 arg(s) -> /home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/imperial_eskd/scsemi_cv_20261002/fold3
+Running as unit: ftscore-score-imperial_eskd-scsemi_cv_20261002-f3-20261008T134703.service; invocation ID: 54bfbafe12e443ed99b9ade9c180374f
+unit=ftscore-score-imperial_eskd-scsemi_cv_20261002-f3-20261008T134703 log=/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/logs/score-imperial_eskd-scsemi_cv_20261002-f3_20261008T134703.log
+unit ftscore-score-imperial_eskd-scsemi_cv_20261002-f3-20261008T134703 finished rc=0
+scoring 2 arg(s) -> /home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/imperial_eskd/scsemi_cv_20261002/fold4
+Running as unit: ftscore-score-imperial_eskd-scsemi_cv_20261002-f4-20261008T134716.service; invocation ID: 74b369cfe81b45d3b0ea11714875d27d
+unit=ftscore-score-imperial_eskd-scsemi_cv_20261002-f4-20261008T134716 log=/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/logs/score-imperial_eskd-scsemi_cv_20261002-f4_20261008T134716.log
+unit ftscore-score-imperial_eskd-scsemi_cv_20261002-f4-20261008T134716 finished rc=0
+Running as unit: ftscore-pool-imperial_eskd-scsemi_cv_20261002-20261008T134729.service; invocation ID: 322b693d0ad143e48d0c80d6a28b5934
+unit=ftscore-pool-imperial_eskd-scsemi_cv_20261002-20261008T134729 log=/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/logs/pool-imperial_eskd-scsemi_cv_20261002_20261008T134729.log
+unit ftscore-pool-imperial_eskd-scsemi_cv_20261002-20261008T134729 finished rc=0
+scoring 2 arg(s) -> /home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/imperial_eskd/scsemi_cv_20261002/pooled
+Running as unit: ftscore-score-imperial_eskd-scsemi_cv_20261002-pooled-20261008T134742.service; invocation ID: d020c0c383eb43ac88739de1eed22774
+unit=ftscore-score-imperial_eskd-scsemi_cv_20261002-pooled-20261008T134742 log=/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/logs/score-imperial_eskd-scsemi_cv_20261002-pooled_20261008T134742.log
+unit ftscore-score-imperial_eskd-scsemi_cv_20261002-pooled-20261008T134742 finished rc=0
+finalize_scsemi_cv_budget imperial_eskd cv done 2026-10-08T13:48:25+09:00 failed=0 -> /home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/imperial_eskd/scsemi_cv_20261002

paper-releases/pbisc-diffusion/updates/20261008T050202Z-scsemi-imperial-deck/diffusion/dataset/server_1/model8/plans/paired_finetune_intradataset_20260927/logs/pool-imperial_eskd-scsemi_cv_20261002_20261008T134729.log

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+scsemi__raw: 157 samples, 235500 cells
+UNIT_EXIT 0

paper-releases/pbisc-diffusion/updates/20261008T050202Z-scsemi-imperial-deck/diffusion/dataset/server_1/model8/plans/paired_finetune_intradataset_20260927/logs/score-imperial_eskd-scsemi_cv_20261002-f0_20261008T134614.log

@@ -0,0 +1,11 @@
+13:46:15 imperial_eskd: 47 scored donors, 1 arm(s); fitting the observed reference
+13:46:17 reference: R1 7037 cells, PCA var 0.265, R2 control P/C 0.9913/1.0000; contrast on
+13:46:17 observed top-50 DEG lists: T 0 (sig 0, 37+7 donors, 43376 cells), B 50 (sig 58, 37+7 donors, 12740 cells), Mono 50 (sig 89, 36+7 donors, 15344 cells), NK 26 (sig 26, 37+7 donors, 10153 cells), DC 33 (sig 33, 37+7 donors, 2139 cells)
+13:46:17 scsemi__raw: loading generated_counts (70500 cells in the NPZ, 70500 scored)
+13:46:23 scsemi__raw: Poisson read-out nnz 8947224 (whole NPZ), median library 1368; annotating
+13:46:28 scsemi__raw: L1 0.5568 (null 0.618597117217712) P/C 0.5323/0.1312 pb r 0.6071 top1 0.128 mono 14.5% (10.7 s)
+13:46:28 scsemi__raw: top-50 DEG 1/159 (T 0, B 0, Mono 0, NK 0, DC 1); broadcast 7 (0.07 s)
+             comp_l1  comp_l1_obs_loo_null  precision  coverage  precision_dm  coverage_dm  pb_r_median  pb_top1  mono_pct_gen  mono_pct_obs  median_umi_gen  median_umi_obs  contrast_mean_cp10k_r_gen  contrast_pseudobulk_log1p_cpm_r_gen  contrast_mean_cp10k_r_broadcast  contrast_pseudobulk_log1p_cpm_r_broadcast  deg_top50_T  deg_top50_B  deg_top50_Mono  deg_top50_NK  deg_top50_DC  deg_top50_sum  deg_top50_max  deg_top50_sum_4type  deg_top50_sum_broadcast  seconds
+scsemi__raw   0.5568                0.6186     0.5323    0.1312        0.4712       0.1309       0.6071   0.1277       14.5489       18.8358          1368.0          1246.0                     0.4931                               0.2249                             0.53                                     0.4095          0.0          0.0             0.0           0.0           1.0            1.0          159.0                  0.0                      7.0     10.7
+13:46:28 done in 13.2 s -> /home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/imperial_eskd/scsemi_cv_20261002/fold0
+UNIT_EXIT 0