Archive 4 checkpoints (1-4)
Browse files- paper-releases/pbisc-diffusion/updates/20261015T121654Z-x1-nine-core40-deck/diffusion/dataset/server_1/model8/plans/paper_figures_strictpairs_20261012/recoveries/x1_priority_completion_20261015/evaluation/units/giroux2022/disease/draw2/lora/receipts/score.json +71 -0
- paper-releases/pbisc-diffusion/updates/20261015T121654Z-x1-nine-core40-deck/diffusion/dataset/server_1/model8/plans/paper_figures_strictpairs_20261012/recoveries/x1_priority_completion_20261015/evaluation/units/giroux2022/disease/draw2/lora/score/contrast.csv +14 -0
- paper-releases/pbisc-diffusion/updates/20261015T121654Z-x1-nine-core40-deck/diffusion/dataset/server_1/model8/plans/paper_figures_strictpairs_20261012/recoveries/x1_priority_completion_20261015/evaluation/units/imperial_eskd/disease/draw4/lora/score/summary.json +1010 -0
- paper-releases/pbisc-diffusion/updates/20261015T121654Z-x1-nine-core40-deck/diffusion/dataset/server_1/model8/plans/paper_figures_strictpairs_20261012/recoveries/x1_priority_completion_20261015/evaluation/units/imperial_eskd/disease/draw4/lora/scoring_support.json +311 -0
paper-releases/pbisc-diffusion/updates/20261015T121654Z-x1-nine-core40-deck/diffusion/dataset/server_1/model8/plans/paper_figures_strictpairs_20261012/recoveries/x1_priority_completion_20261015/evaluation/units/giroux2022/disease/draw2/lora/receipts/score.json
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{
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"state": "completed",
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"stage": "score",
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| 4 |
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"at": "2026-10-15T11:42:05.740987+00:00",
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"outputs": [
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| 6 |
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{
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| 7 |
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"path": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/recoveries/x1_priority_completion_20261015/evaluation/units/giroux2022/disease/draw2/lora/scoring_support.json",
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"sha256": "ed95609e99d2595083d60d7fcdb83ea402006289831467ad55ca1fde4e45f0b6",
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"bytes": 1944
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"support_sha256": "c9ac2355733aaf62165d452aaa3f2a4ee95874fc15e983c8c06cec01a9b0abb5",
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| 48 |
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"binding": {
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| 49 |
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"arm": "lora",
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| 50 |
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"npz": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/generated/giroux2022/disease/draw2/lora.npz",
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"npz_sha256": "8d63ed804152bd4b19bf2a6910b247960df05da77474855cc76aeb87d0bf7bbc",
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"receipt": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/generated/giroux2022/disease/draw2/lora.log",
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"receipt_sha256": "da6139e5f555666d1df59db7460ab1d297d272cd390ad03850554a098329c2d5",
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"source_binding": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/runs/giroux2022/disease/draw2/lora/RUN.json",
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"source_binding_sha256": "f0c51a5cb7a719af70376a5a6bc23af7ef57514698aec7fb6cfe22f49aeedc23",
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"condition_npz": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/data/giroux2022/disease/draw2/test_raw.npz",
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"condition_sha256": "fedb8e8039576499367bfec5479e15b4bac720126d8c5d7412d1d12f85531c28",
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| 58 |
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"checkpoint_sha256": "0a84ab6c8c78762ba3cca12894bd394d946d48b130e984793f0f01ad6ef6971d",
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"support_sha256": "c9ac2355733aaf62165d452aaa3f2a4ee95874fc15e983c8c06cec01a9b0abb5"
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| 60 |
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},
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| 61 |
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"reuse": {
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| 62 |
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"source_summary": {
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| 63 |
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"path": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/recoveries/giroux_width_comparison_20261015/draw2/score/summary.json",
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| 64 |
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"sha256": "243b1f124f387e2971c8e45861b513aecb86935603a614311e9ad848da25ebeb",
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| 65 |
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"bytes": 20472
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| 66 |
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},
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| 67 |
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"source_arm": "lora",
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| 68 |
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"validated_support_sha256": "c9ac2355733aaf62165d452aaa3f2a4ee95874fc15e983c8c06cec01a9b0abb5",
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"annotation_reexecuted": false
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}
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paper-releases/pbisc-diffusion/updates/20261015T121654Z-x1-nine-core40-deck/diffusion/dataset/server_1/model8/plans/paper_figures_strictpairs_20261012/recoveries/x1_priority_completion_20261015/evaluation/units/giroux2022/disease/draw2/lora/score/contrast.csv
ADDED
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arm,celltype,statistic,n_genes,r_generated,r_broadcast,partial_r_generated_given_broadcast,r_generated_vs_broadcast,n_case_donors_obs,n_control_donors_obs,n_case_donors_gen,n_control_donors_gen,n_cells_obs,n_cells_gen,deg_scored,top50_overlap,top50_jaccard,obs_top_list_size,gen_top_list_size,n_sig_obs,n_sig_gen,top50_overlap_broadcast,top50_jaccard_broadcast,broadcast_top_list_size,n_sig_broadcast
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| 2 |
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lora,T cell,mean_cp10k,2872,0.3080621259565519,0.3625775242708975,0.1961302895883202,0.3842147513889183,6,6,6,6,67243,11982,,,,,,,,,,,
|
| 3 |
+
lora,T cell,pseudobulk_log1p_cpm,2872,0.1845285724736361,0.4811642437769449,0.0990465142936753,0.2069588961713433,6,6,6,6,67243,11982,,,,,,,,,,,
|
| 4 |
+
lora,B cell,mean_cp10k,3000,0.124313878707442,0.3415650846257105,0.0836889404025809,0.1358068172109013,6,6,6,6,10555,890,,,,,,,,,,,
|
| 5 |
+
lora,B cell,pseudobulk_log1p_cpm,3000,0.0675077373705333,0.444312077425732,0.0337621238415838,0.0841038516314542,6,6,6,6,10555,890,,,,,,,,,,,
|
| 6 |
+
lora,Monocyte,mean_cp10k,3030,0.2108622663271227,0.5778525672489366,0.0395140319205837,0.3118819612025332,6,6,6,6,25096,2829,,,,,,,,,,,
|
| 7 |
+
lora,Monocyte,pseudobulk_log1p_cpm,3030,0.0793828623192974,0.5873665894516398,0.0026420234021854,0.1315416958588181,6,6,6,6,25096,2829,,,,,,,,,,,
|
| 8 |
+
lora,NK cell,mean_cp10k,2903,0.0697037264106271,0.3037611845888768,0.0149918629817665,0.1832429928475508,6,6,6,6,16282,1172,,,,,,,,,,,
|
| 9 |
+
lora,NK cell,pseudobulk_log1p_cpm,2903,-0.0153012132243883,0.3887293796905318,-0.0394822879208256,0.0540803891261983,6,6,6,6,16282,1172,,,,,,,,,,,
|
| 10 |
+
lora,T cell,welch_top50_deg,5498,,,,,6,6,6,6,67243,11982,True,0.0,0.0,26.0,0.0,26.0,0.0,0.0,0.0,0.0,0.0
|
| 11 |
+
lora,B cell,welch_top50_deg,5498,,,,,6,6,6,6,10555,890,True,0.0,0.0,27.0,0.0,27.0,0.0,0.0,0.0,0.0,0.0
|
| 12 |
+
lora,Monocyte,welch_top50_deg,5498,,,,,6,6,6,6,25096,2829,True,0.0,,0.0,0.0,0.0,0.0,0.0,,0.0,0.0
|
| 13 |
+
lora,NK cell,welch_top50_deg,5498,,,,,6,6,6,6,16282,1172,True,0.0,0.0,10.0,0.0,10.0,0.0,0.0,0.0,0.0,0.0
|
| 14 |
+
lora,DC,welch_top50_deg,5498,,,,,6,6,6,6,1911,307,True,0.0,,0.0,0.0,0.0,0.0,0.0,,0.0,0.0
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paper-releases/pbisc-diffusion/updates/20261015T121654Z-x1-nine-core40-deck/diffusion/dataset/server_1/model8/plans/paper_figures_strictpairs_20261012/recoveries/x1_priority_completion_20261015/evaluation/units/imperial_eskd/disease/draw4/lora/score/summary.json
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|
| 1 |
+
{
|
| 2 |
+
"schema": "paired_ft_scores.v1",
|
| 3 |
+
"dataset": "imperial_eskd",
|
| 4 |
+
"written_utc": "2026-10-15T07:25:58.792404+00:00",
|
| 5 |
+
"command": [
|
| 6 |
+
"/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/tools/score_ft.py",
|
| 7 |
+
"--dataset",
|
| 8 |
+
"imperial_eskd",
|
| 9 |
+
"--out",
|
| 10 |
+
"/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/recoveries/disease_width_comparison_20261015/imperial_eskd/draw4/score",
|
| 11 |
+
"--arm",
|
| 12 |
+
"lora=/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/generated/imperial_eskd/disease/draw4/lora.npz",
|
| 13 |
+
"--condition",
|
| 14 |
+
"lora=/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/data/imperial_eskd/disease/draw4/test_raw.npz",
|
| 15 |
+
"--donors",
|
| 16 |
+
"/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/recoveries/disease_width_comparison_20261015/imperial_eskd/draw4/test_samples.txt",
|
| 17 |
+
"--threads",
|
| 18 |
+
"2",
|
| 19 |
+
"--case-groups",
|
| 20 |
+
"covid_positive",
|
| 21 |
+
"--control-groups",
|
| 22 |
+
"covid_negative"
|
| 23 |
+
],
|
| 24 |
+
"arms": [
|
| 25 |
+
"lora"
|
| 26 |
+
],
|
| 27 |
+
"donors": [
|
| 28 |
+
"C20_1004",
|
| 29 |
+
"C20_1404",
|
| 30 |
+
"C21_1004",
|
| 31 |
+
"C21_1704",
|
| 32 |
+
"C21_2504",
|
| 33 |
+
"C23_2204",
|
| 34 |
+
"C31_1304",
|
| 35 |
+
"C31_2004",
|
| 36 |
+
"C31_2704",
|
| 37 |
+
"C34_1404",
|
| 38 |
+
"C34_2104",
|
| 39 |
+
"C34_2504",
|
| 40 |
+
"C40_1504",
|
| 41 |
+
"C40_2204",
|
| 42 |
+
"C40_0105",
|
| 43 |
+
"C42_1504",
|
| 44 |
+
"C42_2204",
|
| 45 |
+
"C42_2704",
|
| 46 |
+
"C58_1604",
|
| 47 |
+
"C58_2501",
|
| 48 |
+
"C58_2901",
|
| 49 |
+
"C58_0102",
|
| 50 |
+
"C58_0402",
|
| 51 |
+
"C58_1003",
|
| 52 |
+
"C60_2504",
|
| 53 |
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paper-releases/pbisc-diffusion/updates/20261015T121654Z-x1-nine-core40-deck/diffusion/dataset/server_1/model8/plans/paper_figures_strictpairs_20261012/recoveries/x1_priority_completion_20261015/evaluation/units/imperial_eskd/disease/draw4/lora/scoring_support.json
ADDED
|
@@ -0,0 +1,311 @@
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|
| 1 |
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{
|
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| 5 |
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| 6 |
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| 62 |
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| 63 |
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| 64 |
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| 65 |
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| 66 |
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| 67 |
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| 68 |
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| 69 |
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| 70 |
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| 71 |
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| 72 |
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| 73 |
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| 74 |
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| 75 |
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| 76 |
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| 77 |
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| 78 |
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| 79 |
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| 80 |
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| 81 |
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| 82 |
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| 83 |
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| 84 |
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| 85 |
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| 86 |
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| 87 |
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| 88 |
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| 89 |
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| 90 |
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| 91 |
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| 92 |
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| 93 |
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| 94 |
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| 95 |
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| 96 |
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| 97 |
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| 98 |
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| 99 |
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| 101 |
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| 103 |
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| 104 |
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| 105 |
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| 106 |
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| 107 |
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| 108 |
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| 109 |
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| 110 |
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| 111 |
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| 112 |
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| 113 |
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| 114 |
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| 115 |
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| 116 |
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| 117 |
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| 118 |
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| 119 |
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| 120 |
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| 121 |
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| 122 |
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| 123 |
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| 124 |
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| 125 |
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| 126 |
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| 127 |
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| 128 |
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| 129 |
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| 130 |
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| 131 |
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| 132 |
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| 133 |
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| 134 |
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| 135 |
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| 137 |
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| 140 |
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| 142 |
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| 143 |
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| 146 |
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| 147 |
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| 148 |
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| 149 |
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| 150 |
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],
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| 152 |
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"C240",
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| 293 |
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"C246",
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| 294 |
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"C251"
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| 295 |
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],
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| 296 |
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"arm_bindings": {
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"lora": {
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| 298 |
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"arm": "lora",
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| 299 |
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"npz": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/generated/imperial_eskd/disease/draw4/lora.npz",
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"npz_sha256": "b675a0e816dfe73aea961f990fdd194f292ce693073025d62f05a393914d178d",
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"receipt": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/generated/imperial_eskd/disease/draw4/lora.log",
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"receipt_sha256": "44ed4699fe0d87f56065ca912cd7ae2937d00424abadf391b8e39e719e266e55",
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"source_binding": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/runs/imperial_eskd/disease/draw4/lora/RUN.json",
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"source_binding_sha256": "15b218a20d1683ff3c4fad89982e9292d94a32269d4cc353c5e76454e475edbf",
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"condition_npz": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/data/imperial_eskd/disease/draw4/test_raw.npz",
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}
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}
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}
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