Archive 4 checkpoints (1-4)

paper-releases/pbisc-diffusion/updates/20261002T022002Z-deck-time-to-apply-scsemi-reps/diffusion/dataset/server_1/model8/presentations/2026-09-30--paper-summary--r00/data/sec09_scsemi_representative.csv

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+b,giroux2022,lora,,0.0771138992863955,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scsemi/analysis/representative_dependence_20261002/summary.csv
+b,ji2025_chili,scsemi,,0.7206531054035691,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scsemi/analysis/representative_dependence_20261002/summary.csv
+b,ji2025_chili,lora,,0.3932217730826383,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scsemi/analysis/representative_dependence_20261002/summary.csv

paper-releases/pbisc-diffusion/updates/20261002T022002Z-deck-time-to-apply-scsemi-reps/diffusion/dataset/server_1/model8/presentations/2026-09-30--paper-summary--r00/data/sec09_time_to_apply.csv

@@ -0,0 +1,11 @@
+cohort,method,n_draws,n_test_min,n_test_max,step1_min_mean,step2_min_mean,total_min_mean,total_min_sd,total_min_min,total_min_max,per_test_s_mean,speedup_mean,speedup_min,speedup_max
+immicro,lora,5,102,102,1.9009999999999998,6.453333333333333,8.354333333333335,0.13265766301105864,8.19,8.511666666666667,4.914313725490196,16.825345244102497,15.158879220651391,18.695368598015737
+immicro,scsemi,5,102,102,14.535868345416771,126.06685242442997,140.60272076984674,14.054797333471077,124.15122081713488,155.77448808737148,82.70748280579218,16.825345244102497,15.158879220651391,18.695368598015737
+ye2026_sepsis,lora,5,77,77,1.8403333333333334,4.866666666666666,6.706999999999999,0.12370664223611179,6.571666666666667,6.841666666666667,5.226233766233767,36.44380983884548,25.800257619068525,47.2879211378772
+ye2026_sepsis,scsemi,5,77,77,30.046279530510365,213.78366580743196,243.82994533794232,52.909895829648,176.34476082633336,310.76045507774967,189.99736000359138,36.44380983884548,25.800257619068525,47.2879211378772
+imperial_eskd,lora,5,142,145,1.7593333333333332,9.04,10.799333333333333,0.10724841361168085,10.653333333333334,10.95,4.531176856169571,21.251274625954995,18.714507214106373,26.129679754747897
+imperial_eskd,scsemi,5,142,145,32.47919444179652,196.93481380590364,229.4140082477002,29.8942984237893,204.9238539944648,281.5037498911507,96.31599438871895,21.251274625954995,18.714507214106373,26.129679754747897
+giroux2022,lora,5,10,12,1.9400000000000002,0.7100000000000001,2.65,0.09537207837377425,2.515,2.7800000000000002,14.804454545454544,58.701771748160766,53.86422130253944,63.45505480912225
+giroux2022,scsemi,5,10,12,117.49389488612981,38.10133894805331,155.59523383418312,12.147333280786363,142.06940176871674,166.67527729862778,871.9593235573095,58.701771748160766,53.86422130253944,63.45505480912225
+ji2025_chili,lora,5,24,26,1.8076666666666665,1.5866666666666667,3.3943333333333334,0.12156159846852219,3.256666666666667,3.55,8.084641025641025,16.836336774681808,11.340576470381455,20.182318687799413
+ji2025_chili,scsemi,5,24,26,24.271592720673652,32.80546354040009,57.077056261073736,11.481140230011212,38.63356384243283,67.4054227521352,136.56796001322988,16.836336774681808,11.340576470381455,20.182318687799413

paper-releases/pbisc-diffusion/updates/20261002T022002Z-deck-time-to-apply-scsemi-reps/diffusion/dataset/server_1/model8/presentations/2026-09-30--paper-summary--r00/data/sec09_time_to_apply_runs.csv

@@ -0,0 +1,51 @@
+cohort,draw,method,host,n_test,step1_s,step2_s,step1,step2,src1,src2,total_s,per_test_s
+immicro,0,lora,server_1,102,104.4,387.0,"fine-tune (3,000 steps)","generate 1,500 cells per test sample",/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/runs/immicro/fewshot_n5/draw0/lora/RUN.json,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/logs/run_queue_immicro_fewshot_n5_20260928T125103.log [2026-09-28T13:13:24 -> 2026-09-28T13:19:51],491.4,4.817647058823529
+immicro,0,scsemi,server_1,102,928.3880074389745,6520.685241589119,train on 5 representatives (2 stages each),one model per test sample,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scsemi/work/immicro/fewshot_n5/draw0/scsemi_project/models/*.receipt.json,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/generated/immicro/fewshot_n5/draw0/scsemi5__raw.log,7449.073249028093,73.03012989243229
+immicro,1,lora,server_1,102,121.7,389.0,"fine-tune (3,000 steps)","generate 1,500 cells per test sample",/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/runs/immicro/fewshot_n5/draw1/lora/RUN.json,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/logs/run_queue_immicro_fewshot_n5_20260928T125103.log [2026-09-28T13:28:33 -> 2026-09-28T13:35:02],510.7,5.006862745098039
+immicro,1,scsemi,server_1,102,961.855789763038,8384.61349547925,train on 5 representatives (2 stages each),one model per test sample,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scsemi/work/immicro/fewshot_n5/draw1/scsemi_project/models/*.receipt.json,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/generated/immicro/fewshot_n5/draw1/scsemi5__raw.log,9346.469285242289,91.63205181610087
+immicro,2,lora,server_1,102,119.0,387.0,"fine-tune (3,000 steps)","generate 1,500 cells per test sample",/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/runs/immicro/fewshot_n5/draw2/lora/RUN.json,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/logs/run_queue_immicro_fewshot_n5_20260928T125103.log [2026-09-28T13:43:40 -> 2026-09-28T13:50:07],506.0,4.96078431372549
+immicro,2,scsemi,server_2,102,723.1178486720019,7117.470242642885,train on 5 representatives (2 stages each),one model per test sample,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scsemi/work/immicro/fewshot_n5/draw2/scsemi_project/models/*.receipt.json,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/generated/immicro/fewshot_n5/draw2/scsemi5__raw.log,7840.588091314887,76.86851069916555
+immicro,3,lora,server_1,102,104.9,390.0,"fine-tune (3,000 steps)","generate 1,500 cells per test sample",/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/runs/immicro/fewshot_n5/draw3/lora/RUN.json,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/logs/run_queue_immicro_fewshot_n5_20260928T125103.log [2026-09-28T13:58:33 -> 2026-09-28T14:05:03],494.9,4.851960784313725
+immicro,3,scsemi,server_2,102,934.7177463980333,8317.620172759955,train on 5 representatives (2 stages each),one model per test sample,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scsemi/work/immicro/fewshot_n5/draw3/scsemi_project/models/*.receipt.json,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/generated/immicro/fewshot_n5/draw3/scsemi5__raw.log,9252.337919157988,90.70919528586262
+immicro,4,lora,server_1,102,120.3,383.0,"fine-tune (3,000 steps)","generate 1,500 cells per test sample",/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/runs/immicro/fewshot_n5/draw4/lora/RUN.json,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/logs/run_queue_immicro_fewshot_n5_20260928T125103.log [2026-09-28T14:13:42 -> 2026-09-28T14:20:05],503.3,4.934313725490196
+immicro,4,scsemi,server_1,102,812.6811113529839,7479.66657485778,train on 5 representatives (2 stages each),one model per test sample,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scsemi/work/immicro/fewshot_n5/draw4/scsemi_project/models/*.receipt.json,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/generated/immicro/fewshot_n5/draw4/scsemi5__raw.log,8292.347686210764,81.29752633539964
+ye2026_sepsis,0,lora,server_1,77,113.5,297.0,"fine-tune (3,000 steps)","generate 1,500 cells per test sample",/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/runs/ye2026_sepsis/fewshot_n5/draw0/lora/RUN.json,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/logs/run_queue_ye2026_sepsis_fewshot_n5_20260928T114002.log [2026-09-28T11:58:32 -> 2026-09-28T12:03:29],410.5,5.3311688311688314
+ye2026_sepsis,0,scsemi,server_1,77,1667.8378428450378,12693.371376999828,train on 5 representatives (2 stages each),one model per test sample,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scsemi/work/ye2026_sepsis/fewshot_n5/draw0/scsemi_project/models/*.receipt.json,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/generated/ye2026_sepsis/fewshot_n5/draw0/scsemi5__raw.log,14361.209219844866,186.50921064733592
+ye2026_sepsis,1,lora,server_1,77,104.9,293.0,"fine-tune (3,000 steps)","generate 1,500 cells per test sample",/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/runs/ye2026_sepsis/fewshot_n5/draw1/lora/RUN.json,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/logs/run_queue_ye2026_sepsis_fewshot_n5_20260928T114002.log [2026-09-28T12:10:28 -> 2026-09-28T12:15:21],397.9,5.167532467532467
+ye2026_sepsis,1,scsemi,server_1,77,1749.182337608072,11072.941119197872,train on 5 representatives (2 stages each),one model per test sample,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scsemi/work/ye2026_sepsis/fewshot_n5/draw1/scsemi_project/models/*.receipt.json,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/generated/ye2026_sepsis/fewshot_n5/draw1/scsemi5__raw.log,12822.123456805944,166.52108385462265
+ye2026_sepsis,2,lora,server_1,77,116.1,294.0,"fine-tune (3,000 steps)","generate 1,500 cells per test sample",/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/runs/ye2026_sepsis/fewshot_n5/draw2/lora/RUN.json,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/logs/run_queue_ye2026_sepsis_fewshot_n5_20260928T114002.log [2026-09-28T12:22:27 -> 2026-09-28T12:27:21],410.1,5.325974025974026
+ye2026_sepsis,2,scsemi,server_1,77,1509.1943936750176,9071.491255904984,train on 5 representatives (2 stages each),one model per test sample,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scsemi/work/ye2026_sepsis/fewshot_n5/draw2/scsemi_project/models/*.receipt.json,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/generated/ye2026_sepsis/fewshot_n5/draw2/scsemi5__raw.log,10580.685649580002,137.41150194259743
+ye2026_sepsis,3,lora,server_1,77,112.3,287.0,"fine-tune (3,000 steps)","generate 1,500 cells per test sample",/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/runs/ye2026_sepsis/fewshot_n5/draw3/lora/RUN.json,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/logs/run_queue_ye2026_sepsis_fewshot_n5_20260928T114002.log [2026-09-28T12:34:22 -> 2026-09-28T12:39:09],399.3,5.185714285714286
+ye2026_sepsis,3,scsemi,server_1,77,2042.00256648098,14697.33540400592,train on 5 representatives (2 stages each),one model per test sample,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scsemi/work/ye2026_sepsis/fewshot_n5/draw3/scsemi_project/models/*.receipt.json,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/generated/ye2026_sepsis/fewshot_n5/draw3/scsemi5__raw.log,16739.3379704869,217.393999616713
+ye2026_sepsis,4,lora,server_1,77,105.3,289.0,"fine-tune (3,000 steps)","generate 1,500 cells per test sample",/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/runs/ye2026_sepsis/fewshot_n5/draw4/lora/RUN.json,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/logs/run_queue_ye2026_sepsis_fewshot_n5_20260928T114002.log [2026-09-28T12:46:04 -> 2026-09-28T12:50:53],394.3,5.120779220779221
+ye2026_sepsis,4,scsemi,server_1,77,2045.666718544002,16599.96058612098,train on 5 representatives (2 stages each),one model per test sample,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scsemi/work/ye2026_sepsis/fewshot_n5/draw4/scsemi_project/models/*.receipt.json,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/generated/ye2026_sepsis/fewshot_n5/draw4/scsemi5__raw.log,18645.62730466498,242.15100395668804
+imperial_eskd,0,lora,server_2,142,106.4,540.0,"fine-tune (3,000 steps)","generate 1,500 cells per test sample",/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/runs/imperial_eskd/fewshot_n5/draw0/lora/RUN.json,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/logs/run_queue_imperial_eskd_all_20260928T121435.log [2026-09-28T12:53:54 -> 2026-09-28T13:02:54],646.4,4.552112676056338
+imperial_eskd,0,scsemi,server_2,142,2999.530677245966,13890.694316223075,train on 15 representatives (2 stages each),one model per test sample,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scsemi/work/imperial_eskd/fewshot_n5/draw0/scsemi_project/models/*.receipt.json,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/generated/imperial_eskd/fewshot_n5/draw0/scsemi5__raw.log,16890.22499346904,118.94524643288057
+imperial_eskd,1,lora,server_2,143,106.2,541.0,"fine-tune (3,000 steps)","generate 1,500 cells per test sample",/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/runs/imperial_eskd/fewshot_n5/draw1/lora/RUN.json,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/logs/run_queue_imperial_eskd_all_20260928T121435.log [2026-09-28T13:14:12 -> 2026-09-28T13:23:13],647.2,4.525874125874126
+imperial_eskd,1,scsemi,server_2,143,1667.1280269939962,11677.008487411986,train on 14 representatives (2 stages each),one model per test sample,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scsemi/work/imperial_eskd/fewshot_n5/draw1/scsemi_project/models/*.receipt.json,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/generated/imperial_eskd/fewshot_n5/draw1/scsemi5__raw.log,13344.136514405982,93.31563996088099
+imperial_eskd,2,lora,server_2,142,104.2,535.0,"fine-tune (3,000 steps)","generate 1,500 cells per test sample",/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/runs/imperial_eskd/fewshot_n5/draw2/lora/RUN.json,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/logs/run_queue_imperial_eskd_all_20260928T121435.log [2026-09-28T13:34:21 -> 2026-09-28T13:43:16],639.2,4.501408450704226
+imperial_eskd,2,scsemi,server_2,142,1676.0385957780381,11441.981359606012,train on 15 representatives (2 stages each),one model per test sample,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scsemi/work/imperial_eskd/fewshot_n5/draw2/scsemi_project/models/*.receipt.json,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/generated/imperial_eskd/fewshot_n5/draw2/scsemi5__raw.log,13118.01995538405,92.38042222101444
+imperial_eskd,3,lora,server_2,145,105.0,552.0,"fine-tune (3,000 steps)","generate 1,500 cells per test sample",/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/runs/imperial_eskd/fewshot_n5/draw3/lora/RUN.json,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/logs/run_queue_imperial_eskd_all_20260928T121435.log [2026-09-28T13:54:35 -> 2026-09-28T14:03:47],657.0,4.531034482758621
+imperial_eskd,3,scsemi,server_2,145,1547.337771994964,10748.093467672923,train on 12 representatives (2 stages each),one model per test sample,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scsemi/work/imperial_eskd/fewshot_n5/draw3/scsemi_project/models/*.receipt.json,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/generated/imperial_eskd/fewshot_n5/draw3/scsemi5__raw.log,12295.431239667887,84.79607751495095
+imperial_eskd,4,lora,server_2,143,106.0,544.0,"fine-tune (3,000 steps)","generate 1,500 cells per test sample",/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/runs/imperial_eskd/fewshot_n5/draw4/lora/RUN.json,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/logs/run_queue_imperial_eskd_all_20260928T121435.log [2026-09-28T14:15:05 -> 2026-09-28T14:24:09],650.0,4.545454545454546
+imperial_eskd,4,scsemi,server_2,143,1853.7232605259924,11322.666510857103,train on 14 representatives (2 stages each),one model per test sample,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scsemi/work/imperial_eskd/fewshot_n5/draw4/scsemi_project/models/*.receipt.json,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/generated/imperial_eskd/fewshot_n5/draw4/scsemi5__raw.log,13176.389771383096,92.1425858138678
+giroux2022,0,lora,server_1,11,122.8,44.0,"fine-tune (3,000 steps)","generate 1,500 cells per test sample",/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/runs/giroux2022/fewshot_n5/draw0/lora/RUN.json,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/logs/run_queue_giroux2022_all_20260928T162658.log [2026-09-28T16:33:33 -> 2026-09-28T16:34:17],166.8,15.163636363636364
+giroux2022,0,scsemi,server_1,11,7340.041792000178,2349.170100490999,train on 13 representatives (2 stages each),one model per test sample,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scsemi/work/giroux2022/fewshot_n5/draw0/scsemi_project/models/*.receipt.json,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/generated/giroux2022/fewshot_n5/draw0/scsemi5__raw.log,9689.211892491177,880.8374447719252
+giroux2022,1,lora,server_1,10,121.6,39.0,"fine-tune (3,000 steps)","generate 1,500 cells per test sample",/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/runs/giroux2022/fewshot_n5/draw1/lora/RUN.json,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/logs/run_queue_giroux2022_all_20260928T162658.log [2026-09-28T16:37:20 -> 2026-09-28T16:37:59],160.6,16.06
+giroux2022,1,scsemi,server_1,10,7526.845954745979,2368.033949743083,train on 14 representatives (2 stages each),one model per test sample,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scsemi/work/giroux2022/fewshot_n5/draw1/scsemi_project/models/*.receipt.json,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/generated/giroux2022/fewshot_n5/draw1/scsemi5__raw.log,9894.879904489062,989.4879904489062
+giroux2022,2,lora,server_1,12,103.9,47.0,"fine-tune (3,000 steps)","generate 1,500 cells per test sample",/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/runs/giroux2022/fewshot_n5/draw2/lora/RUN.json,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/logs/run_queue_giroux2022_all_20260928T162658.log [2026-09-28T16:40:51 -> 2026-09-28T16:41:38],150.9,12.575000000000001
+giroux2022,2,scsemi,server_1,12,6134.954045255028,2389.2100608679757,train on 12 representatives (2 stages each),one model per test sample,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scsemi/work/giroux2022/fewshot_n5/draw2/scsemi_project/models/*.receipt.json,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/generated/giroux2022/fewshot_n5/draw2/scsemi5__raw.log,8524.164106123004,710.3470088435837
+giroux2022,3,lora,server_1,11,116.1,43.0,"fine-tune (3,000 steps)","generate 1,500 cells per test sample",/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/runs/giroux2022/fewshot_n5/draw3/lora/RUN.json,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/logs/run_queue_giroux2022_all_20260928T162658.log [2026-09-28T16:44:39 -> 2026-09-28T16:45:22],159.1,14.463636363636363
+giroux2022,3,scsemi,server_1,11,6609.620399103122,1960.1772101309034,train on 13 representatives (2 stages each),one model per test sample,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scsemi/work/giroux2022/fewshot_n5/draw3/scsemi_project/models/*.receipt.json,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/generated/giroux2022/fewshot_n5/draw3/scsemi5__raw.log,8569.797609234025,779.0725099303659
+giroux2022,4,lora,server_1,10,117.6,40.0,"fine-tune (3,000 steps)","generate 1,500 cells per test sample",/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/runs/giroux2022/fewshot_n5/draw4/lora/RUN.json,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/logs/run_queue_giroux2022_all_20260928T162658.log [2026-09-28T16:48:20 -> 2026-09-28T16:49:00],157.6,15.76
+giroux2022,4,scsemi,server_1,10,7636.706274734635,2363.810363183031,train on 14 representatives (2 stages each),one model per test sample,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scsemi/work/giroux2022/fewshot_n5/draw4/scsemi_project/models/*.receipt.json,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/generated/giroux2022/fewshot_n5/draw4/scsemi5__raw.log,10000.516637917666,1000.0516637917666
+ji2025_chili,0,lora,server_1,25,118.0,95.0,"fine-tune (3,000 steps)","generate 1,500 cells per test sample",/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/runs/ji2025_chili/fewshot_n5/draw0/lora/RUN.json,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/logs/run_queue_ji2025_chili_all_20260928T142051.log [2026-09-28T14:29:00 -> 2026-09-28T14:30:35],213.0,8.52
+ji2025_chili,0,scsemi,server_1,25,1744.807295340026,2299.518069788086,train on 8 representatives (2 stages each),one model per test sample,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scsemi/work/ji2025_chili/fewshot_n5/draw0/scsemi_project/models/*.receipt.json,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/generated/ji2025_chili/fewshot_n5/draw0/scsemi5__raw.log,4044.325365128112,161.77301460512447
+ji2025_chili,1,lora,server_1,26,103.4,101.0,"fine-tune (3,000 steps)","generate 1,500 cells per test sample",/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/runs/ji2025_chili/fewshot_n5/draw1/lora/RUN.json,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/logs/run_queue_ji2025_chili_all_20260928T142051.log [2026-09-28T14:34:13 -> 2026-09-28T14:35:54],204.4,7.861538461538462
+ji2025_chili,1,scsemi,server_1,26,914.993629714998,1403.0202008309716,train on 7 representatives (2 stages each),one model per test sample,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scsemi/work/ji2025_chili/fewshot_n5/draw1/scsemi_project/models/*.receipt.json,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/generated/ji2025_chili/fewshot_n5/draw1/scsemi5__raw.log,2318.0138305459695,89.1543780979219
+ji2025_chili,2,lora,server_1,26,113.0,95.0,"fine-tune (3,000 steps)","generate 1,500 cells per test sample",/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/runs/ji2025_chili/fewshot_n5/draw2/lora/RUN.json,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/logs/run_queue_ji2025_chili_all_20260928T142051.log [2026-09-28T14:39:39 -> 2026-09-28T14:41:14],208.0,8.0
+ji2025_chili,2,scsemi,server_1,26,1449.8530828540388,1859.5623742070165,train on 7 representatives (2 stages each),one model per test sample,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scsemi/work/ji2025_chili/fewshot_n5/draw2/scsemi_project/models/*.receipt.json,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/generated/ji2025_chili/fewshot_n5/draw2/scsemi5__raw.log,3309.4154570610553,127.28520988696367
+ji2025_chili,3,lora,server_1,25,103.5,94.0,"fine-tune (3,000 steps)","generate 1,500 cells per test sample",/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/runs/ji2025_chili/fewshot_n5/draw3/lora/RUN.json,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/logs/run_queue_ji2025_chili_all_20260928T142051.log [2026-09-28T14:44:48 -> 2026-09-28T14:46:22],197.5,7.9
+ji2025_chili,3,scsemi,server_1,25,1425.9840368290315,2081.7531171619485,train on 8 representatives (2 stages each),one model per test sample,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scsemi/work/ji2025_chili/fewshot_n5/draw3/scsemi_project/models/*.receipt.json,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/generated/ji2025_chili/fewshot_n5/draw3/scsemi5__raw.log,3507.73715399098,140.3094861596392
+ji2025_chili,4,lora,server_1,24,104.4,91.0,"fine-tune (3,000 steps)","generate 1,500 cells per test sample",/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/runs/ji2025_chili/fewshot_n5/draw4/lora/RUN.json,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/logs/run_queue_ji2025_chili_all_20260928T142051.log [2026-09-28T14:49:52 -> 2026-09-28T14:51:23],195.4,8.141666666666667
+ji2025_chili,4,scsemi,server_1,24,1745.8397714640014,2197.7853001320036,train on 9 representatives (2 stages each),one model per test sample,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scsemi/work/ji2025_chili/fewshot_n5/draw4/scsemi_project/models/*.receipt.json,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/generated/ji2025_chili/fewshot_n5/draw4/scsemi5__raw.log,3943.625071596005,164.3177113165002