junidude14 commited on
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Archive 4 checkpoints (1-4)

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paper-releases/pbisc-diffusion/updates/20261001T200638Z-extra-realism-metrics/diffusion/dataset/server_1/model8/plans/paired_finetune_intradataset_20260927/scores_extra/imperial_eskd/fewshot_n5/draw2/en.csv ADDED
@@ -0,0 +1,25 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
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+ dataset,design,unit,set,cellset,distance,n_samples,n_cells_real,n_cells_gen,n_pcs,lb,ub,dif_mean,en,lb_exact,lb_queries,n_representative_rows,en_reps_at_lb,seconds
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+ imperial_eskd,fewshot,draw2,real_R2,pc,l2,142,21232,21232,100,13.424375562677637,17.67607704877423,14.511697357834121,0.2557380377507956,True,"[21232, 21232]",,,15.1
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+ imperial_eskd,fewshot,draw2,zs_raw,pc,sq,142,21232,21232,100,235.69658773672748,289.1417907600928,637.587011764981,7.519672511161644,True,"[21232, 21232]",,,19.2
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+ imperial_eskd,fewshot,draw2,zs_raw,pc,l2,142,21232,21232,100,14.935425802542023,16.601165268880283,24.55591312299675,5.775505422587556,True,"[21232, 21232]",,,19.2
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+ imperial_eskd,fewshot,draw2,zs_raw,all,sq,142,480410,213000,100,172.42256749916965,244.05928605809945,486.05771767394333,4.378133958170783,False,"[20000, 20000]",,,83.5
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+ imperial_eskd,fewshot,draw2,zs_raw,all,l2,142,480410,213000,100,12.83564439502835,15.373256294263484,21.56456816262681,3.4398182678089815,False,"[20000, 20000]",,,83.5
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+ imperial_eskd,fewshot,draw2,zs_cal,pc,sq,142,21232,21232,100,202.17531516804158,314.39764078076547,337.8359107059704,1.2088556782015882,True,"[21232, 21232]",,,15.9
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+ imperial_eskd,fewshot,draw2,zs_cal,all,sq,142,480410,213000,100,160.38335814093364,253.23340026490723,274.5901625247755,1.2300134902615625,False,"[20000, 20000]",,,117.7
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+ imperial_eskd,fewshot,draw2,zs_cal,all,l2,142,480410,213000,100,12.466465873318636,15.660524405219796,16.35507810225341,1.2174517749429612,False,"[20000, 20000]",,,117.7
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+ imperial_eskd,fewshot,draw2,lora5,pc,l2,142,21232,21232,100,14.665996710484277,17.32945130423169,18.480559341977127,1.432186094122918,True,"[21232, 21232]",,,21.4
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+ imperial_eskd,fewshot,draw2,zs_pseudo,pc,sq,142,21232,21232,100,196.32010688488805,314.806695117312,323.6738608500457,1.0748368728057203,True,"[21232, 21232]",,,17.4
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+ imperial_eskd,fewshot,draw2,zs_pseudo,pc,l2,142,21232,21232,100,13.785517768410278,17.363221976155074,17.654518257589558,1.0814198895492544,True,"[21232, 21232]",,,17.4
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+ imperial_eskd,fewshot,draw2,zs_pseudo,all,sq,142,480410,213000,100,157.55052946966305,252.9924511916796,264.7383519025755,1.1230685688109565,False,"[20000, 20000]",,,91.2
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+ imperial_eskd,fewshot,draw2,zs_pseudo,all,l2,142,480410,213000,100,12.354945537217741,15.65833883434924,16.03944212041843,1.115367215402453,False,"[20000, 20000]",,,91.2
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+ imperial_eskd,fewshot,draw2,scsemi5,pc,sq,142,21232,21232,100,152.97559419600765,312.53113855970827,438.78192519928234,1.791265431377241,True,"[21232, 21232]",15.0,1.6201254220099885,16.4
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+ imperial_eskd,fewshot,draw2,scsemi5,pc,l2,142,21232,21232,100,12.064738507365952,17.251307455001054,20.701192341506133,1.6651574328493421,True,"[21232, 21232]",15.0,1.5060659583732905,16.4
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+ imperial_eskd,fewshot,draw2,scsemi5,all,sq,142,480410,213000,100,128.4221490086644,250.78811405588357,388.27965260571875,2.123609318136618,False,"[20000, 20000]",15.0,1.9207167081235654,82.5
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paper-releases/pbisc-diffusion/updates/20261001T200638Z-extra-realism-metrics/diffusion/dataset/server_1/model8/plans/paired_finetune_intradataset_20260927/scores_extra/imperial_eskd/fewshot_n5/draw2/en_per_sample.csv ADDED
The diff for this file is too large to render. See raw diff
 
paper-releases/pbisc-diffusion/updates/20261001T200638Z-extra-realism-metrics/diffusion/dataset/server_1/model8/plans/paired_finetune_intradataset_20260927/scores_extra/imperial_eskd/fewshot_n5/draw2/manifest.json ADDED
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+ {
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+ "schema": "paired_ft_extra_metrics.v1",
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+ "dataset": "imperial_eskd",
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+ "arms": [
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+ "zs_raw",
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+ "bandwidth_m": 25.735726960115755,
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+ "bw_max_cells": 4000,
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+ "en_pcs": 100,
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+ "en_lb_max_queries_all_cells": 20000,
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+ "en_all_cells": true
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+ "n_representative_rows": 15,
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+ "fetched_from_server2": [
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+ "/tmp/claude-1000/-home-sj-server-1/c8102cb0-e04f-4e04-adda-0728604e4435/scratchpad/fetch/generated/imperial_eskd/fewshot_n5/draw2/lora__raw.npz",
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+ "/tmp/claude-1000/-home-sj-server-1/c8102cb0-e04f-4e04-adda-0728604e4435/scratchpad/fetch/generated/imperial_eskd/fewshot_n5/draw2/scsemi5__raw.npz"
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+ ],
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+ "code_sha256": {
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+ "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/tools/ft_common.py": "4a6366b0f22208cd58714fc0261b8840c643b9d4569704d560cfd93534cbc747",
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+ "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/tools/score_ft.py": "ec5f40b4cea6d5062d0138f3b934abb6465e34cbfeac869c8a0906924c033aec",
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+ "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/umap/cell_immicro_5arm/tools/stage_b_embed.py": "d056cfdf38fb0e5f478756f370174e993b75d0c973c48e02e21749175a4ca2da"
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+ },
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+ "seconds": 2265.1,
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+ "max_abs_diff_k10_pooled": 0.0,
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+ "extra_metrics_py_sha256_ran": "4e69c029476c108d843265cbc4a9098eab9c7998cb74ae715ce8251287457fef",
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+ "code_sha256_note": "code_sha256 was hashed when the unit finished; extra_metrics_py_sha256_ran is the file the process loaded at start (scores_extra/_code/). v1-v3 differ only in the collector and the per-unit lock; metric code identical (scores_extra/_code/README.md)"
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paper-releases/pbisc-diffusion/updates/20261001T200638Z-extra-realism-metrics/diffusion/dataset/server_1/model8/plans/paired_finetune_intradataset_20260927/scores_extra/imperial_eskd/fewshot_n5/draw2/metrics.csv ADDED
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1
+ dataset,design,unit,label,set,real_side,mode,n_real,n_gen,precision_k3,coverage_k3,density_k3,expected_coverage_identical_k3,precision_k5,coverage_k5,density_k5,expected_coverage_identical_k5,precision_k10,coverage_k10,density_k10,expected_coverage_identical_k10,c2st_knn_auc,c2st_knn_auc_sd,c2st_rf_auc,c2st_rf_auc_sd,nn1_acc,nn1_acc_real,nn1_acc_gen,mmd2_bw0.5,mmd2_bw1,mmd2_bw2,mmd2_sum,mmd_bandwidth_m,seconds
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+ imperial_eskd,fewshot,draw2,Real vs real control (held-out real cells),real_R2,R1,raw,21232,21232,0.8394875659382065,0.9204973624717407,1.3104747550866618,0.8750176622275478,0.913715146948003,0.9851168048229089,1.299698568198945,0.9687610382422729,0.9693858327053504,0.9998116051243406,1.2866569329314241,0.9990247018518403,0.5027809180362924,0.002595691949041581,0.5592952053301239,0.00918832479029859,0.5036501507159006,0.42803315749811605,0.5792671439336851,5.8404783178978015e-05,-1.8715556886483853e-06,-3.6641742573451097e-06,5.286905323298452e-05,25.735726960115755,74.9
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+ imperial_eskd,fewshot,draw2,Real vs real control (held-out real cells),real_R2,R1,dm,21232,21232,0.8405237377543331,0.9190373021853806,1.3110399397136399,0.8750176622275478,0.9138564431047476,0.9837509419743783,1.301544837980407,0.9687610382422729,0.9689619442351168,0.9996703089675961,1.28150433308214,0.9990247018518403,0.5017213423451137,0.0038793907817058068,0.5601254719643944,0.0064455668126656915,0.5020723436322532,0.4266672946495855,0.5774773926149209,5.0233402709931596e-05,-4.555366881930922e-06,-4.1800938674896315e-06,4.149794196051104e-05,25.735726960115755,79.9
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+ imperial_eskd,fewshot,draw2,Real vs real control (out-of-sample: R2 vs R3),real_R3,R2,raw,20606,20606,,,,,,,,,,,,,0.4975349089172962,0.007650165347366592,0.5021803086603513,0.004215972376291308,0.5013102979714646,0.5014558866349607,0.5011647093079685,-6.69102299122315e-06,-4.869088171544078e-06,-1.7852276026353309e-06,-1.3345338765402559e-05,25.735726960115755,63.0
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+ imperial_eskd,fewshot,draw2,Real vs real control (out-of-sample: R2 vs R3),real_R3,R2,dm,20606,20606,,,,,,,,,,,,,0.4948344406600227,0.006362023026128428,0.49820667236916616,0.004364795574117686,0.5008977967582258,0.5030088323789188,0.49878676113753273,-7.744847762225504e-06,-5.701272353775266e-06,-2.0813925931673083e-06,-1.552751270916808e-05,25.735726960115755,62.0
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+ imperial_eskd,fewshot,draw2,"Zero-shot, real bulk",zs_raw,R1,raw,21232,21232,0.2142049736247174,0.048794272795779955,0.10609771414217535,0.8750176622275478,0.30279766390354185,0.07003579502637529,0.10637716654107007,0.9687610382422729,0.48930859080633005,0.11148266767143934,0.12046439336850037,0.9990247018518403,0.9955628734882929,0.0006100021804116923,0.9974002858822271,0.0002307816635462355,0.9803127354935945,0.9791352675207234,0.9814902034664658,0.16147458293076863,0.24017781878364508,0.1090105839204687,0.5106629856348824,25.735726960115755,56.1
7
+ imperial_eskd,fewshot,draw2,"Zero-shot, real bulk",zs_raw,R1,dm,21232,21232,0.22240015071590052,0.06772795779954785,0.11349221301180608,0.8750176622275478,0.32545214770158254,0.09669366993217784,0.11952712886209496,0.9687610382422729,0.5243500376789751,0.14930293896006028,0.1335908063300678,0.9990247018518403,0.9944846546597738,0.0004920372817315145,0.9964268720080419,0.000184327392860268,0.973153730218538,0.97103428786737,0.9752731725697061,0.1455949411244625,0.2219973391763671,0.10085559434213964,0.4684478746429692,25.735726960115755,57.8
8
+ imperial_eskd,fewshot,draw2,"Zero-shot, real bulk",zs_raw,R2,raw,21232,21232,,,,,,,,,,,,,0.9951613003007557,0.00025076543476178486,0.9975251807178586,0.0003452933572265021,0.9804304822908817,0.9829973624717407,0.9778636021100227,0.1670883902913933,0.24241656737114037,0.10927132155375219,0.5187762792162859,25.735726960115755,52.5
9
+ imperial_eskd,fewshot,draw2,"Zero-shot, real bulk",zs_raw,R2,dm,21232,21232,,,,,,,,,,,,,0.9946846098808795,0.00027006299273870055,0.9966978534319256,0.00022368864984258848,0.9739073097211756,0.9775339110776187,0.9702807083647325,0.1501327131005843,0.22374038811580554,0.10102666517275805,0.4748997663891479,25.735726960115755,57.2
10
+ imperial_eskd,fewshot,draw2,Zero-shot + calibration,zs_cal,R1,raw,21232,21232,0.6183590806330068,0.3797569706103994,0.6619881939211253,0.8750176622275478,0.7357290881688018,0.4873775433308214,0.6892143933685004,0.9687610382422729,0.8569611906556142,0.6349378296910324,0.7241616428033157,0.9990247018518403,0.9536358081853166,0.0016456037188547134,0.9649354895105173,0.0021227921146241497,0.866922569706104,0.8096269781461944,0.9242181612660135,0.04241178517024474,0.02296281178259596,0.007167926504031419,0.07254252345687212,25.735726960115755,59.8
11
+ imperial_eskd,fewshot,draw2,Zero-shot + calibration,zs_cal,R1,dm,21232,21232,0.6668236623963828,0.4157874905802562,0.8022324792765637,0.8750176622275478,0.7691220798794273,0.5302373775433308,0.8209495101733232,0.9687610382422729,0.8774020346646572,0.6785983421250942,0.8468396759608139,0.9990247018518403,0.9458944114717006,0.0018181507547224158,0.964294053691216,0.002000435875071598,0.8569376412961568,0.7907403918613414,0.9231348907309721,0.0445502224389836,0.025457920722473437,0.00812830642401785,0.07813644958547489,25.735726960115755,57.4
12
+ imperial_eskd,fewshot,draw2,Zero-shot + calibration,zs_cal,R2,raw,21232,21232,,,,,,,,,,,,,0.9584814386779221,0.002520746291196093,0.9647349351574667,0.002349679643597028,0.8726215146948003,0.8401469480030144,0.9050960813865863,0.041464474948523566,0.022711263463558895,0.007142436708521105,0.07131817512060357,25.735726960115755,48.1
13
+ imperial_eskd,fewshot,draw2,Zero-shot + calibration,zs_cal,R2,dm,21232,21232,,,,,,,,,,,,,0.9499673319642958,0.001622295967261138,0.9651356138590778,0.00171441594730561,0.8644969856819894,0.8161266013564431,0.9128673700075358,0.044196137196394036,0.025438440322535616,0.00815483935574135,0.077789416874671,25.735726960115755,50.4
14
+ imperial_eskd,fewshot,draw2,"LoRA, 5 donors",lora5,R1,raw,21232,21232,0.5997550866616428,0.4208270535041447,0.6394122079879427,0.8750176622275478,0.713733986435569,0.5251036171816127,0.6502166541070082,0.9687610382422729,0.8453749058025621,0.6650339110776187,0.6628909193669932,0.9990247018518403,0.9212255536180315,0.004181378255225623,0.9253779561846207,0.0047816409241233,0.8190938206480783,0.7822626224566692,0.8559250188394876,0.0278632373899656,0.018905274291361795,0.006213255173895593,0.05298176685522299,25.735726960115755,58.3
15
+ imperial_eskd,fewshot,draw2,"LoRA, 5 donors",lora5,R1,dm,21232,21232,0.6565561416729465,0.5879333082140166,0.8392834714895754,0.8750176622275478,0.7603146194423511,0.7269216277317258,0.8512905048982669,0.9687610382422729,0.8739638281838734,0.8674642049736248,0.866154860587792,0.9990247018518403,0.8683052197874741,0.0028876999151518892,0.8946027604678802,0.003283070143852737,0.7526139788997739,0.6942351168048229,0.8109928409947249,0.013161009249697209,0.008124479895905479,0.002663173978451061,0.02394866312405375,25.735726960115755,59.4
16
+ imperial_eskd,fewshot,draw2,"LoRA, 5 donors",lora5,R2,raw,21232,21232,,,,,,,,,,,,,0.9257259525016647,0.0032801922501306006,0.922093628465206,0.00023558446683191346,0.8191409193669932,0.8200828937452901,0.8181989449886963,0.027497271427234793,0.01878257468060518,0.0062048522159448005,0.05248469832378477,25.735726960115755,50.5
17
+ imperial_eskd,fewshot,draw2,"LoRA, 5 donors",lora5,R2,dm,21232,21232,,,,,,,,,,,,,0.872589281321412,0.0032055696387742814,0.8947194973905281,0.001639204276340751,0.757465146948003,0.7250376789751318,0.7898926149208741,0.01324617180038351,0.0082774298735242,0.0027288596474632776,0.02425246132137099,25.735726960115755,51.9
18
+ imperial_eskd,fewshot,draw2,"Zero-shot, sc pseudobulk input (reference)",zs_pseudo,R1,raw,21232,21232,0.5819517709118311,0.411595704596835,0.6131468224064305,0.8750176622275478,0.7038903541823662,0.5349472494348154,0.6339299171062547,0.9687610382422729,0.8389223813112283,0.6944235116804823,0.6719856819894499,0.9990247018518403,0.955638445898856,0.0014210365248348462,0.9673131362880728,0.00130552960688929,0.8640024491333835,0.8016201959306707,0.9263847023360965,0.027803084658505894,0.01767165923590408,0.005914145187050801,0.051388889081460776,25.735726960115755,54.7
19
+ imperial_eskd,fewshot,draw2,"Zero-shot, sc pseudobulk input (reference)",zs_pseudo,R1,dm,21232,21232,0.662490580256217,0.4534664657121326,0.8260644310474755,0.8750176622275478,0.771665410700829,0.5734269027882442,0.8396759608138659,0.9687610382422729,0.8810757347400151,0.7309250188394876,0.8648973247927657,0.9990247018518403,0.9463087078328357,0.003764670588637747,0.9671903926725343,0.0018053698010161616,0.8485540693293142,0.7669555388093444,0.9301525998492841,0.030075662180552687,0.01896606949069568,0.006278458269437959,0.055320189940686326,25.735726960115755,60.0
20
+ imperial_eskd,fewshot,draw2,"Zero-shot, sc pseudobulk input (reference)",zs_pseudo,R2,raw,21232,21232,,,,,,,,,,,,,0.9597818908578926,0.0023009613814043532,0.9671545774420618,0.0014999455720322863,0.872550866616428,0.8340241145440844,0.9110776186887717,0.027070568960503694,0.017479355439509403,0.0058940184417384245,0.05044394284175152,25.735726960115755,50.7
21
+ imperial_eskd,fewshot,draw2,"Zero-shot, sc pseudobulk input (reference)",zs_pseudo,R2,dm,21232,21232,,,,,,,,,,,,,0.9492082393926399,0.0015240988250192977,0.9676446492555166,0.0007375552649178962,0.8531461944235117,0.7897042200452148,0.9165881688018086,0.02968701670912477,0.018928281103556488,0.006299322780578542,0.0549146205932598,25.735726960115755,49.9
22
+ imperial_eskd,fewshot,draw2,"scSemiProfiler, 5 donors",scsemi5,R1,raw,21232,21232,0.13220610399397137,0.024632629992464204,0.05325295151971867,0.8750176622275478,0.19706103993971363,0.03654860587792012,0.05368311981914092,0.9687610382422729,0.3373210248681236,0.059721175584024115,0.058708553127354936,0.9990247018518403,0.9991451151247807,0.000420124884155587,0.9997815007728941,6.065758396344071e-05,0.9944188018085908,0.9900150715900528,0.9988225320271289,0.1756955696046808,0.13171329822506306,0.04597777231512734,0.3533866401448712,25.735726960115755,55.3
23
+ imperial_eskd,fewshot,draw2,"scSemiProfiler, 5 donors",scsemi5,R1,dm,21232,21232,0.18618123587038432,0.07003579502637529,0.09980218538055764,0.8750176622275478,0.2722776940467219,0.10446495855312736,0.10844009042954032,0.9687610382422729,0.41423323285606634,0.1705444611906556,0.11880180859080633,0.9990247018518403,0.9976070056542901,0.0005051607535105796,0.9993374587092532,0.00011935644519084202,0.9846929163526752,0.9723059532780708,0.9970798794272796,0.15931301305314904,0.10947449227909511,0.03660616888104884,0.305393674213293,25.735726960115755,60.3
24
+ imperial_eskd,fewshot,draw2,"scSemiProfiler, 5 donors",scsemi5,R2,raw,21232,21232,,,,,,,,,,,,,0.9991692325161965,0.0001425434555293448,0.9997897905035776,4.892521222332609e-05,0.9952194800301432,0.9923229088168802,0.9981160512434062,0.17686811135870895,0.1314723017705599,0.045831195693517346,0.3541716088227862,25.735726960115755,54.5
25
+ imperial_eskd,fewshot,draw2,"scSemiProfiler, 5 donors",scsemi5,R2,dm,21232,21232,,,,,,,,,,,,,0.9977183752760999,0.000624238780854646,0.9993272803764686,0.00013536266276401878,0.9852345516201959,0.9727298417483045,0.9977392614920875,0.15938182334070683,0.10931694483169774,0.03658427678823006,0.30528304496063463,25.735726960115755,55.7