Archive 4 checkpoints (1-4)

paper-releases/pbisc-diffusion/updates/20261015T121654Z-x1-nine-core40-deck/diffusion/dataset/server_1/model8/plans/paper_figures_strictpairs_20261012/recoveries/x1_priority_completion_20261015/evaluation/units/immicro/healthy/fold3/n10/lora/scoring_support.json

@@ -0,0 +1,67 @@
+{
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+  "support_sha256": "6c96dd0aa52a33a7104c5f9396953beecd5a93bf1832486be95fb2c9ce2f86fb",
+  "cohort": "immicro",
+  "unit": "fold3_n10",
+  "test_sample_ids": [
+    "HS1",
+    "HS4",
+    "HS10",
+    "HS15",
+    "HS23",
+    "HS29",
+    "HS30",
+    "HS40",
+    "HS49",
+    "HS53",
+    "HS61",
+    "HS62",
+    "HS63",
+    "HS69",
+    "HS78",
+    "HS79",
+    "HS89",
+    "HS90",
+    "HS100",
+    "HS106",
+    "HS110"
+  ],
+  "test_donor_ids": [
+    "HS1",
+    "HS4",
+    "HS10",
+    "HS15",
+    "HS23",
+    "HS29",
+    "HS30",
+    "HS40",
+    "HS49",
+    "HS53",
+    "HS61",
+    "HS62",
+    "HS63",
+    "HS69",
+    "HS78",
+    "HS79",
+    "HS89",
+    "HS90",
+    "HS100",
+    "HS106",
+    "HS110"
+  ],
+  "arm_bindings": {
+    "lora": {
+      "arm": "lora",
+      "npz": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/generated/immicro/healthy/fold3/n10/lora.npz",
+      "npz_sha256": "2c5af0871471ce923832404cb26734abd7d4926d07133a8405c6d130a1dd128f",
+      "receipt": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/generated/immicro/healthy/fold3/n10/lora.log",
+      "receipt_sha256": "c166d69385875e528a8f741a4951f42d31a6013a6f849d6f2b1dc2d142a20561",
+      "source_binding": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/runs/immicro/healthy/fold3/n10/lora/RUN.json",
+      "source_binding_sha256": "68b506169f8d2726923976fb6e019ea68e14f2e49cbe1151e7887726d7a5efb1",
+      "condition_npz": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/data/immicro/healthy/fold3/n10/test_raw.npz",
+      "condition_sha256": "dce8858d52803f436b448466b5619f696cb6df84bb2051772a78d792f089669b",
+      "checkpoint_sha256": "51125dcc64cb1b51251c577a1665dabbf4868576edb2a92e9634d69f2266b433",
+      "support_sha256": "6c96dd0aa52a33a7104c5f9396953beecd5a93bf1832486be95fb2c9ce2f86fb"
+    }
+  }
+}

paper-releases/pbisc-diffusion/updates/20261015T121654Z-x1-nine-core40-deck/diffusion/dataset/server_1/model8/plans/paper_figures_strictpairs_20261012/recoveries/x1_priority_completion_20261015/evaluation/units/immicro/healthy/fold3/n5/lora/receipts/score.json

@@ -0,0 +1,52 @@
+{
+  "state": "completed",
+  "stage": "score",
+  "at": "2026-10-15T11:43:00.395185+00:00",
+  "outputs": [
+    {
+      "path": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/recoveries/x1_priority_completion_20261015/evaluation/units/immicro/healthy/fold3/n5/lora/score/arms/lora/generated_cells.parquet",
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+    {
+      "path": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/recoveries/x1_priority_completion_20261015/evaluation/units/immicro/healthy/fold3/n5/lora/score/arms/lora/labels/labels.manifest.json",
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+      "bytes": 5109
+    },
+    {
+      "path": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/recoveries/x1_priority_completion_20261015/evaluation/units/immicro/healthy/fold3/n5/lora/score/arms/lora/labels/labels.parquet",
+      "sha256": "99be5a0a07aa0c0037f83d3a119cae08b5c634d0c839df142d4595ef923f5763",
+      "bytes": 758381
+    },
+    {
+      "path": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/recoveries/x1_priority_completion_20261015/evaluation/units/immicro/healthy/fold3/n5/lora/score/per_donor.csv",
+      "sha256": "3c341ef978d69dd3e8a429ff90e3e0638ef88f1f1daf76d527cd7190c4dd83bd",
+      "bytes": 8460
+    },
+    {
+      "path": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/recoveries/x1_priority_completion_20261015/evaluation/units/immicro/healthy/fold3/n5/lora/score/summary.json",
+      "sha256": "97b3b366733014c94fd79bbd2bcb955ee39e5f7080564944a772e6d1893be038",
+      "bytes": 7535
+    },
+    {
+      "path": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/recoveries/x1_priority_completion_20261015/evaluation/units/immicro/healthy/fold3/n5/lora/scoring_support.json",
+      "sha256": "99b8ab24a48acaa977c6992c1b690d86d323d9a726f5797c4f342bac96b7d734",
+      "bytes": 2071
+    }
+  ],
+  "support_sha256": "da5bd0ca62732497c449a00693622c21fdd07445fbcb1b6ca86bb59b5802636e",
+  "binding": {
+    "arm": "lora",
+    "npz": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/generated/immicro/healthy/fold3/n5/lora.npz",
+    "npz_sha256": "f83870dfcc86aa6466ea07e6c62cebb422fb830fdaccc9d06615e55076a83a06",
+    "receipt": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/generated/immicro/healthy/fold3/n5/lora.log",
+    "receipt_sha256": "791799815903ed1743d0502b6f028b66575b3b2d684d5ba900d09a1401acc647",
+    "source_binding": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/runs/immicro/healthy/fold3/n5/lora/RUN.json",
+    "source_binding_sha256": "6c22e1b8c21f2a16c8299055334bdce92af474219a58874912db59d613aab949",
+    "condition_npz": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/data/immicro/healthy/fold3/n5/test_raw.npz",
+    "condition_sha256": "dce8858d52803f436b448466b5619f696cb6df84bb2051772a78d792f089669b",
+    "checkpoint_sha256": "c12717dfe73de83185f356e207ec5331cff09bae5081b1d358749a358208e39f",
+    "support_sha256": "da5bd0ca62732497c449a00693622c21fdd07445fbcb1b6ca86bb59b5802636e"
+  },
+  "reuse": {}
+}

paper-releases/pbisc-diffusion/updates/20261015T121654Z-x1-nine-core40-deck/diffusion/dataset/server_1/model8/plans/paper_figures_strictpairs_20261012/recoveries/x1_priority_completion_20261015/evaluation/units/immicro/healthy/fold3/n5/lora/score/per_donor.csv

@@ -0,0 +1,22 @@
+arm,donor,group,n_generated_cells,n_observed_cells,n_reference_cells,gen_T cell,obs_T cell,gen_B cell,obs_B cell,gen_Monocyte,obs_Monocyte,gen_NK cell,obs_NK cell,gen_DC,obs_DC,gen_Other,obs_Other,comp_l1,comp_l1_obs_loo_null,pb_r,pb_own_rank,pb_top1,precision,coverage,precision_depth_matched,coverage_depth_matched,mono_pct_gen,mono_pct_obs,median_umi_gen,median_umi_obs
+lora,HS1,DB1,1500,4384,150,0.7266666666666667,0.6332116788321168,0.09866666666666667,0.05862226277372263,0.076,0.13822992700729927,0.05333333333333334,0.14393248175182483,0.030666666666666665,0.018476277372262775,0.014666666666666666,0.007527372262773723,0.3056581508515815,0.1477341288426135,0.8996883742344972,3,False,0.9733333333333334,0.9866666666666667,0.98,0.9866666666666667,7.6,13.822992700729927,2324.0,1738.0
+lora,HS4,DB4,1500,4167,150,0.676,0.54307655387569,0.07133333333333333,0.04535637149028078,0.174,0.2371010319174466,0.046,0.14254859611231102,0.025333333333333333,0.02423806095512359,0.007333333333333333,0.007679385649148068,0.3199913606911447,0.2034821822143433,0.9014834595379929,18,False,1.0,0.9,0.9933333333333333,0.9933333333333333,17.4,23.71010319174466,2720.5,2111.0
+lora,HS10,DB4,1500,4115,150,0.664,0.5244228432563791,0.162,0.18347509113001215,0.114,0.13001215066828675,0.019333333333333334,0.13754556500607534,0.03266666666666666,0.021385176184690158,0.008,0.0031591737545565005,0.3113989469420818,0.3134557004122763,0.8942278610097166,11,False,0.9733333333333334,0.9666666666666667,0.9733333333333334,0.9933333333333333,11.4,13.001215066828674,2712.0,2063.0
+lora,HS15,DB4,1500,4592,150,0.442,0.46972996515679444,0.10133333333333333,0.04638501742160279,0.354,0.37282229965156793,0.04933333333333333,0.08776132404181185,0.04133333333333333,0.0195993031358885,0.012,0.0037020905923344947,0.1699605110336818,0.38777794593743353,0.9192282516840011,3,False,1.0,0.8733333333333333,1.0,0.98,35.4,37.282229965156795,2968.5,2302.0
+lora,HS23,DB6,1500,1680,150,0.5946666666666667,0.5630952380952381,0.09733333333333333,0.0994047619047619,0.228,0.2386904761904762,0.05333333333333334,0.06904761904761905,0.02,0.025,0.006666666666666667,0.004761904761904762,0.06695238095238097,0.16257609013548865,0.9199381950030334,4,False,0.9933333333333333,0.96,0.9933333333333333,1.0,22.8,23.86904761904762,3051.0,2296.0
+lora,HS29,DB5,1500,4285,150,0.6573333333333333,0.6550758459743291,0.05333333333333334,0.03663943990665111,0.19466666666666665,0.19883313885647608,0.06666666666666667,0.0823803967327888,0.020666666666666667,0.022870478413068846,0.007333333333333333,0.004200700116686115,0.044168028004667396,0.11412144983123255,0.9116796422544603,6,False,0.9933333333333333,0.9466666666666667,1.0,1.0,19.466666666666665,19.883313885647606,2895.5,2230.0
+lora,HS30,DB3,1500,6447,150,0.6493333333333333,0.5667752442996743,0.05733333333333333,0.08127811385140375,0.21733333333333332,0.26477431363424847,0.04066666666666666,0.049325267566309915,0.03,0.03489995346672871,0.005333333333333333,0.002947107181634869,0.16988863037071503,0.20007609013548855,0.9134808323827497,1,True,0.98,0.9733333333333334,0.9933333333333333,1.0,21.73333333333333,26.47743136342485,2637.0,2410.0
+lora,HS40,DB2,1500,3867,150,0.6786666666666666,0.6938194983191104,0.038,0.045771916214119475,0.14,0.15490043961727437,0.11,0.07525213343677269,0.026,0.026377036462373934,0.007333333333333333,0.003878975950349108,0.07640444789242304,0.17895195202514844,0.9042223504416261,4,False,1.0,0.9933333333333333,0.9933333333333333,1.0,14.000000000000002,15.490043961727437,2109.0,1477.0
+lora,HS49,DB3,1500,3893,150,0.754,0.6773696378114564,0.064,0.027228358592345236,0.09933333333333333,0.1857179553043925,0.04466666666666667,0.07346519393783714,0.022,0.03056768558951965,0.016,0.005651168764449011,0.24750166966349862,0.15437239435175942,0.9006139790471384,2,False,0.9933333333333333,0.9733333333333334,1.0,1.0,9.933333333333334,18.57179553043925,2665.5,2103.0
+lora,HS53,DB7,1500,1544,150,0.7186666666666667,0.7506476683937824,0.096,0.10233160621761658,0.10466666666666667,0.08290155440414508,0.046,0.040803108808290155,0.024,0.01878238341968912,0.010666666666666666,0.0045336787564766836,0.0766252158894646,0.352065151201056,0.8986729375679201,8,False,0.9933333333333333,0.9533333333333334,1.0,1.0,10.466666666666667,8.290155440414509,2839.5,2239.5
+lora,HS61,DB7,1500,1607,150,0.476,0.4971997510889857,0.07733333333333334,0.1001866832607343,0.326,0.29869321717485997,0.09733333333333333,0.07093963907902924,0.016666666666666666,0.02862476664592408,0.006666666666666667,0.0043559427504667085,0.11202240199128816,0.2978358910066771,0.9164487049818033,6,False,0.98,0.96,0.98,1.0,32.6,29.869321717485995,2656.0,2387.0
+lora,HS62,DB3,1500,4121,150,0.7606666666666667,0.6699830138315943,0.084,0.07789371511768989,0.08,0.1400145595729192,0.048666666666666664,0.08881339480708565,0.016666666666666666,0.02062606163552536,0.01,0.0026692550351856345,0.20824136536439375,0.1313498053106149,0.9009933120779018,1,True,0.9866666666666667,1.0,0.9866666666666667,0.9933333333333333,8.0,14.00145595729192,2662.0,2159.0
+lora,HS63,DB5,1500,4391,150,0.7393333333333333,0.7214757458437714,0.09666666666666666,0.05465725347301298,0.082,0.15053518560692325,0.04133333333333333,0.0530630835800501,0.022,0.016624914598041447,0.018666666666666668,0.0036438168982008655,0.16052987170727995,0.2311605312893207,0.8974955116825662,9,False,0.9933333333333333,0.9666666666666667,1.0,0.9933333333333333,8.200000000000001,15.053518560692325,2851.0,2196.0
+lora,HS69,DB6,1500,1765,150,0.6913333333333334,0.6957507082152975,0.098,0.07932011331444759,0.138,0.15637393767705382,0.03866666666666667,0.04645892351274788,0.022,0.020396600566572238,0.012,0.0016997167138810198,0.06116713881019832,0.18845739972958275,0.9083968266471261,4,False,1.0,0.9466666666666667,1.0,1.0,13.8,15.637393767705381,2706.5,1982.0
+lora,HS78,DB1,1500,4299,150,0.6773333333333333,0.6366596882996045,0.16533333333333333,0.08792742498255408,0.07,0.12281926029309141,0.056,0.1139799953477553,0.018,0.02814608048383345,0.013333333333333334,0.0104675505931612,0.24189067224936037,0.13722843671536716,0.8938902131434263,2,False,0.9733333333333334,0.9933333333333333,0.9733333333333334,1.0,7.000000000000001,12.28192602930914,2334.5,1732.0
+lora,HS79,DB5,1500,4239,150,0.6433333333333333,0.6161830620429346,0.13733333333333334,0.09648502005189903,0.12933333333333333,0.15876385940080207,0.03266666666666666,0.11181882519462137,0.03133333333333333,0.014154281670205236,0.026,0.0025949516395376267,0.21716536919084695,0.08679629285174892,0.9026011033810448,10,False,1.0,0.88,1.0,1.0,12.933333333333334,15.876385940080207,2656.5,2188.0
+lora,HS89,DB2,1500,3796,150,0.666,0.5795574288724974,0.04466666666666667,0.045574288724973655,0.16066666666666668,0.19836670179135932,0.10066666666666667,0.14673340358271866,0.02266666666666667,0.022128556375131718,0.005333333333333333,0.007639620653319284,0.17396136283807517,0.12946698617378555,0.9082860304662967,3,False,0.98,1.0,0.9866666666666667,1.0,16.066666666666666,19.836670179135933,2559.0,1510.0
+lora,HS90,DB7,1500,1291,150,0.716,0.6839659178931061,0.066,0.06584043377226956,0.142,0.13632842757552285,0.056,0.0844306738962045,0.014,0.024012393493415957,0.006,0.005422153369481022,0.07688613477924085,0.15397753679197315,0.8965759994495415,13,False,1.0,0.94,1.0,1.0,14.2,13.632842757552286,2817.5,2183.0
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+lora,HS110,DB1,1500,4176,150,0.644,0.5744731800766284,0.15533333333333332,0.1285919540229885,0.11866666666666667,0.15158045977011494,0.048,0.10871647509578544,0.03,0.03089080459770115,0.004,0.005747126436781609,0.1925363984674329,0.15437477463529722,0.905227885793734,2,False,0.9933333333333333,0.9933333333333333,0.9866666666666667,1.0,11.866666666666667,15.158045977011495,2524.0,1704.5

paper-releases/pbisc-diffusion/updates/20261015T121654Z-x1-nine-core40-deck/diffusion/dataset/server_1/model8/plans/paper_figures_strictpairs_20261012/recoveries/x1_priority_completion_20261015/evaluation/units/immicro/healthy/fold3/n5/lora/score/summary.json

@@ -0,0 +1,211 @@
+{
+ "schema": "paired_ft_scores.v1",
+ "dataset": "immicro",
+ "written_utc": "2026-10-15T11:43:00.390260+00:00",
+ "command": [
+  "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/tools/score_ft.py",
+  "--dataset",
+  "immicro",
+  "--out",
+  "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/recoveries/x1_priority_completion_20261015/evaluation/units/immicro/healthy/fold3/n5/lora/score",
+  "--donors",
+  "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/recoveries/x1_priority_completion_20261015/evaluation/units/immicro/healthy/fold3/n5/lora/test_sample_ids.txt",
+  "--threads",
+  "2",
+  "--arm",
+  "lora=/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/generated/immicro/healthy/fold3/n5/lora.npz",
+  "--no-contrast",
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