Archive 4 checkpoints (1-4)
Browse files- paper-releases/pbisc-diffusion/updates/20261012T130738Z-strictpairs-implementation/diffusion/dataset/server_1/model8/plans/paper_figures_strictpairs_20261012/archive/20261012T130738Z-strictpairs-implementation/snapshot/scsemi/ye2026_sepsis/disease/draw1/status.json +11 -0
- paper-releases/pbisc-diffusion/updates/20261012T130738Z-strictpairs-implementation/diffusion/dataset/server_1/model8/plans/paper_figures_strictpairs_20261012/archive/20261012T130738Z-strictpairs-implementation/snapshot/scsemi/ye2026_sepsis/disease/draw2/adopted_legacy/ADOPTION.json +308 -0
- paper-releases/pbisc-diffusion/updates/20261012T130738Z-strictpairs-implementation/diffusion/dataset/server_1/model8/plans/paper_figures_strictpairs_20261012/archive/20261012T130738Z-strictpairs-implementation/snapshot/scsemi/ye2026_sepsis/disease/draw2/adopted_legacy/inputs/inputs_manifest.json +0 -0
- paper-releases/pbisc-diffusion/updates/20261012T130738Z-strictpairs-implementation/diffusion/dataset/server_1/model8/plans/paper_figures_strictpairs_20261012/archive/20261012T130738Z-strictpairs-implementation/snapshot/scsemi/ye2026_sepsis/disease/draw2/adopted_legacy/prepared.json +24 -0
paper-releases/pbisc-diffusion/updates/20261012T130738Z-strictpairs-implementation/diffusion/dataset/server_1/model8/plans/paper_figures_strictpairs_20261012/archive/20261012T130738Z-strictpairs-implementation/snapshot/scsemi/ye2026_sepsis/disease/draw1/status.json
ADDED
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{
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"prepared": true,
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"n_reps": 5,
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"reps_pretrained": 0,
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"n_targets": 77,
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"targets_done": 0,
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"pretrain_complete": false,
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"infer_complete": false,
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"run_signature": "70e9747812b14f1dfd1bdc063b591d5e526fe0de9d7f5113e24b1f770b7159e7",
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"updated": "2026-10-12T12:40:04.807020+00:00"
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}
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paper-releases/pbisc-diffusion/updates/20261012T130738Z-strictpairs-implementation/diffusion/dataset/server_1/model8/plans/paper_figures_strictpairs_20261012/archive/20261012T130738Z-strictpairs-implementation/snapshot/scsemi/ye2026_sepsis/disease/draw2/adopted_legacy/ADOPTION.json
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| 1 |
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{
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| 2 |
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"schema": "pbisc.scsemi.legacy-adoption-proof.v1",
|
| 3 |
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"status": "verified_source_not_native_strict_run",
|
| 4 |
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"cohort": "ye2026_sepsis",
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| 5 |
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"unit": "draw2_n5",
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| 6 |
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"support_sha256": "ea331f967a3a212b91cd144bd8ba62cea3cbfe3bdcc9e77268e190757327b0e2",
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|
| 8 |
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| 9 |
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"cellgraph_impl": "tools/lean_cellgraph.fast_cellgraph_lean replaces upstream singlecell_process.fast_cellgraph inside scprocess: same arithmetic, chunked (16 GiB CPU cap); bit-identical outputs verified (validation/lean_cellgraph_*.json)",
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| 138 |
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"remove unused scvi.nn.one_hot import",
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| 139 |
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| 140 |
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"avoid empty slice when geneset_len is zero",
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| 141 |
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"drop a size-1 trailing training batch: scvi DataSplitter(drop_last=True) only when n_obs % batch_size == 1 (upstream's own commented-out remedy); all other cell counts unchanged"
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| 142 |
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],
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"Uri-S147": "f38c39f17f04dbabdbd5c9a2d9abf6e35b7444e40ccff865dc5c6a476c3e7724",
|
| 300 |
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"Uri-S157": "768b83b8937fea38e72002294415e1ff04d76e29de7eeb63f7f525a3e7216a43",
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| 301 |
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"Uri-S20": "aae553ee0514a1a23ee2ffccdbf89a45a44810a45d18bab9ceb1dd21edffe3cf",
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| 302 |
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"Uri-S93": "f95312496cd3f845b13de0d8d527d57deea49e21ad564bd0866ba62612928be4"
|
| 303 |
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},
|
| 304 |
+
"scientific_equivalence": "same exact five representatives and target samples, same raw bulk condition, modeled genes, depth, cell counts after identity alignment, n-only HVG and all pretraining assets, protocol/seed and verified source model/shard/output receipts",
|
| 305 |
+
"provenance_limit": "legacy work was run as fewshot, not as a native strict-support run; source signature and old metadata remain unchanged",
|
| 306 |
+
"adopted_evidence_dir": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/scsemi/ye2026_sepsis/disease/draw2/adopted_legacy",
|
| 307 |
+
"linked_files": 190
|
| 308 |
+
}
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paper-releases/pbisc-diffusion/updates/20261012T130738Z-strictpairs-implementation/diffusion/dataset/server_1/model8/plans/paper_figures_strictpairs_20261012/archive/20261012T130738Z-strictpairs-implementation/snapshot/scsemi/ye2026_sepsis/disease/draw2/adopted_legacy/inputs/inputs_manifest.json
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paper-releases/pbisc-diffusion/updates/20261012T130738Z-strictpairs-implementation/diffusion/dataset/server_1/model8/plans/paper_figures_strictpairs_20261012/archive/20261012T130738Z-strictpairs-implementation/snapshot/scsemi/ye2026_sepsis/disease/draw2/adopted_legacy/prepared.json
ADDED
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{
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"run_signature": "5ddd3f5c4f5cefe7ad557f4b95f2ef55bec236a89974bd1f6606b8bbfb0999be",
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"seconds": 37.8,
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