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  1. paper-releases/pbisc-diffusion/updates/20260930T090852Z-summary-deck-final-path-story/diffusion/dataset/server_1/model8/presentations/2026-09-30--paper-summary--r00/data/sec04_sle_broadcast.csv +24 -0
  2. paper-releases/pbisc-diffusion/updates/20260930T090852Z-summary-deck-final-path-story/diffusion/dataset/server_1/model8/presentations/2026-09-30--paper-summary--r00/data/sec04_sle_numbers.csv +59 -0
  3. paper-releases/pbisc-diffusion/updates/20260930T090852Z-summary-deck-final-path-story/diffusion/dataset/server_1/model8/presentations/2026-09-30--paper-summary--r00/data/sec04_sle_per_celltype.csv +25 -0
  4. paper-releases/pbisc-diffusion/updates/20260930T090852Z-summary-deck-final-path-story/diffusion/dataset/server_1/model8/presentations/2026-09-30--paper-summary--r00/data/sec05_behcet_direction.csv +53 -0
paper-releases/pbisc-diffusion/updates/20260930T090852Z-summary-deck-final-path-story/diffusion/dataset/server_1/model8/presentations/2026-09-30--paper-summary--r00/data/sec04_sle_broadcast.csv ADDED
@@ -0,0 +1,24 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ panel,axis_genes,group,method,value,seed_sd,source
2
+ logFC r,1006,T cell,broadcast (input bulk),0.8228774605798768,,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle_broadcast/tables/per_celltype_logfc_top50.csv
3
+ logFC r,1006,T cell,PBISC 6k 5-seed mean,0.5939658914718996,0.017984822057591335,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle_broadcast/tables/per_celltype_logfc_top50.csv
4
+ logFC r,1006,T cell,scSemiProfiler,0.4732406545923902,,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle_broadcast/tables/per_celltype_logfc_top50.csv
5
+ logFC r,1006,B cell,broadcast (input bulk),0.7262511751549846,,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle_broadcast/tables/per_celltype_logfc_top50.csv
6
+ logFC r,1006,B cell,PBISC 6k 5-seed mean,0.4284912263950824,0.03606402307061042,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle_broadcast/tables/per_celltype_logfc_top50.csv
7
+ logFC r,1006,B cell,scSemiProfiler,0.3389517989307964,,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle_broadcast/tables/per_celltype_logfc_top50.csv
8
+ logFC r,1006,Monocyte,broadcast (input bulk),0.6827628643425065,,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle_broadcast/tables/per_celltype_logfc_top50.csv
9
+ logFC r,1006,Monocyte,PBISC 6k 5-seed mean,0.44946236830281927,0.033404376214340586,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle_broadcast/tables/per_celltype_logfc_top50.csv
10
+ logFC r,1006,Monocyte,scSemiProfiler,0.2919853598203729,,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle_broadcast/tables/per_celltype_logfc_top50.csv
11
+ logFC r,1006,NK cell,broadcast (input bulk),0.6611291872740064,,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle_broadcast/tables/per_celltype_logfc_top50.csv
12
+ logFC r,1006,NK cell,PBISC 6k 5-seed mean,0.3607223505080821,0.024088206588902265,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle_broadcast/tables/per_celltype_logfc_top50.csv
13
+ logFC r,1006,NK cell,scSemiProfiler,0.2561452598619544,,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle_broadcast/tables/per_celltype_logfc_top50.csv
14
+ logFC r,1006,DC,broadcast (input bulk),0.6834395795197014,,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle_broadcast/tables/per_celltype_logfc_top50.csv
15
+ logFC r,1006,DC,PBISC 6k 5-seed mean,0.2929133213063715,0.05744012029427325,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle_broadcast/tables/per_celltype_logfc_top50.csv
16
+ logFC r,1006,DC,scSemiProfiler,0.2809317373955735,,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle_broadcast/tables/per_celltype_logfc_top50.csv
17
+ logFC r,1006,Other,broadcast (input bulk),0.4852811037791405,,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle_broadcast/tables/per_celltype_logfc_top50.csv
18
+ logFC r,1006,Other,PBISC 6k 5-seed mean,0.10213249694534068,0.0561122628197401,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle_broadcast/tables/per_celltype_logfc_top50.csv
19
+ logFC r,1006,Other,scSemiProfiler,0.2662074091651877,,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle_broadcast/tables/per_celltype_logfc_top50.csv
20
+ logFC r,1006,mean,broadcast (input bulk),0.6769568951083694,,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle_broadcast/tables/summary_mean_r_top50.csv
21
+ logFC r,1006,mean,PBISC 6k 5-seed mean,0.37128127582159925,0.017657234388334934,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle_broadcast/tables/summary_mean_r_top50.csv
22
+ logFC r,1006,mean,scSemiProfiler,0.3179103699610459,,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle_broadcast/tables/summary_mean_r_top50.csv
23
+ partial r,1006,mean,PBISC 6k 5-seed mean,0.2078187026128387,0.012468388394282014,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle_broadcast/tables/residual_specificity_summary.csv
24
+ partial r,1006,mean,scSemiProfiler,0.1670468418224036,,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle_broadcast/tables/residual_specificity_summary.csv
paper-releases/pbisc-diffusion/updates/20260930T090852Z-summary-deck-final-path-story/diffusion/dataset/server_1/model8/presentations/2026-09-30--paper-summary--r00/data/sec04_sle_numbers.csv ADDED
@@ -0,0 +1,59 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ key,value,source
2
+ scSemiProfiler run used in SLE benchmark,sle_primary_cap1500_default_budget_venvscvi_gpu2_20260629,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle/MANIFEST.json
3
+ scSemiProfiler representative donors with real sc,14 (10 SLE / 4 HC),/home/sj_server_1/PBISC/immun-pbmc-fm/bulk2sc-paper/results/scsemiprofiler_vs_pbisc_heldout_20260629/inputs/004_A_GSE135779_SLE_PBMC/primary_kmeans/input_manifest.json
4
+ scSemiProfiler representative-cell cap per donor,1500,/home/sj_server_1/PBISC/immun-pbmc-fm/bulk2sc-paper/results/scsemiprofiler_vs_pbisc_heldout_20260629/outputs/scsemiprofiler/004_A_GSE135779_SLE_PBMC/primary_kmeans/sle_primary_cap1500_default_budget_venvscvi_gpu2_20260629/run_config.json
5
+ real target cells total,251179,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle/metrics_1006/panel_2980_diffusion_f016k_e16/pbmc5_other/evaluation_manifest.json
6
+ real cells T cell,158364 (63.0%),/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle/metrics_1006/panel_2980_diffusion_f016k_e16/pbmc5_other/evaluation_manifest.json
7
+ real cells B cell,25048 (10.0%),/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle/metrics_1006/panel_2980_diffusion_f016k_e16/pbmc5_other/evaluation_manifest.json
8
+ real cells Monocyte,44292 (17.6%),/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle/metrics_1006/panel_2980_diffusion_f016k_e16/pbmc5_other/evaluation_manifest.json
9
+ real cells NK cell,16002 (6.4%),/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle/metrics_1006/panel_2980_diffusion_f016k_e16/pbmc5_other/evaluation_manifest.json
10
+ real cells DC,3550 (1.4%),/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle/metrics_1006/panel_2980_diffusion_f016k_e16/pbmc5_other/evaluation_manifest.json
11
+ real cells Other,3923 (1.6%),/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle/metrics_1006/panel_2980_diffusion_f016k_e16/pbmc5_other/evaluation_manifest.json
12
+ "DC cells per donor, diffusion_f016k_e16 (base seed for diffusion)",mean 15.0 of 1500; 41/42 donors with any,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle/metrics_1006/panel_2980_diffusion_f016k_e16/pbmc5_other/composition_long.csv
13
+ "DC cells per donor, scSemiProfiler (base seed for diffusion)",mean 81.1 of 1500; 42/42 donors with any,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle/metrics_1006/panel_2980_diffusion_f016k_e16/pbmc5_other/composition_long.csv
14
+ "DC cells per donor, real (base seed for diffusion)",mean 84.5 of 5980; 42/42 donors with any,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle/metrics_1006/panel_2980_diffusion_f016k_e16/pbmc5_other/composition_long.csv
15
+ donors,42 (30 SLE / 12 HC),/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle/metrics_1006/panel_2980_diffusion_f016k_e16/pbmc5_other/pseudobulk_row_manifest.csv
16
+ logfc_r 1006: broadcast (input bulk logFC copied to every type),0.677,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle_broadcast/tables/summary_mean_r_top50.csv
17
+ logfc_r 1006: PBISC 5-seed mean,0.371,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle/tables_1006.csv
18
+ logfc_r 1006: PBISC 5-seed SD,0.018,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle/tables_1006.csv
19
+ logfc_r 1006: scSemiProfiler,0.318,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle/tables_1006.csv
20
+ top50 1006: broadcast (input bulk logFC copied to every type),113,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle_broadcast/tables/summary_mean_r_top50.csv
21
+ top50 1006: PBISC 5-seed mean,76.2,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle/tables_1006.csv
22
+ top50 1006: PBISC 5-seed SD,3.7,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle/tables_1006.csv
23
+ top50 1006: scSemiProfiler,56.0,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle/tables_1006.csv
24
+ logfc_r 2279: broadcast (input bulk logFC copied to every type),0.643,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle_broadcast/tables/summary_mean_r_top50.csv
25
+ logfc_r 2279: PBISC 5-seed mean,0.333,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle/tables_2279.csv
26
+ logfc_r 2279: PBISC 5-seed SD,0.016,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle/tables_2279.csv
27
+ logfc_r 2279: scSemiProfiler,0.27,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle/tables_2279.csv
28
+ top50 2279: broadcast (input bulk logFC copied to every type),117,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle_broadcast/tables/summary_mean_r_top50.csv
29
+ top50 2279: PBISC 5-seed mean,82.2,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle/tables_2279.csv
30
+ top50 2279: PBISC 5-seed SD,3.5,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle/tables_2279.csv
31
+ top50 2279: scSemiProfiler,56.0,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle/tables_2279.csv
32
+ top-50 truth list size 1006,262,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle/metrics_1006/panel_2980_diffusion_f016k_e16/pbmc5_other/top50_deg_overlap.csv
33
+ top-50 truth list size 2279,265,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle/metrics_2279/panel_2980_diffusion_f016k_e16/pbmc5_other/top50_deg_overlap.csv
34
+ comp_l1: PBISC 5-seed mean,0.181,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle/tables_1006.csv
35
+ comp_l1: PBISC 5-seed SD,0.0031,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle/tables_1006.csv
36
+ comp_l1: scSemiProfiler,0.264,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle/tables_1006.csv
37
+ logFC_pearson T cell 1006: PBISC 5-seed mean / scSemiProfiler,0.594 / 0.473,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle/per_celltype_seed_1006.csv ; /home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle/metrics_1006/panel_2980_diffusion_f016k_e16/pbmc5_other/pseudobulk_logfc_metrics.csv
38
+ logFC_pearson B cell 1006: PBISC 5-seed mean / scSemiProfiler,0.428 / 0.339,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle/per_celltype_seed_1006.csv ; /home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle/metrics_1006/panel_2980_diffusion_f016k_e16/pbmc5_other/pseudobulk_logfc_metrics.csv
39
+ logFC_pearson Monocyte 1006: PBISC 5-seed mean / scSemiProfiler,0.449 / 0.292,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle/per_celltype_seed_1006.csv ; /home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle/metrics_1006/panel_2980_diffusion_f016k_e16/pbmc5_other/pseudobulk_logfc_metrics.csv
40
+ logFC_pearson NK cell 1006: PBISC 5-seed mean / scSemiProfiler,0.361 / 0.256,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle/per_celltype_seed_1006.csv ; /home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle/metrics_1006/panel_2980_diffusion_f016k_e16/pbmc5_other/pseudobulk_logfc_metrics.csv
41
+ logFC_pearson DC 1006: PBISC 5-seed mean / scSemiProfiler,0.293 / 0.281,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle/per_celltype_seed_1006.csv ; /home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle/metrics_1006/panel_2980_diffusion_f016k_e16/pbmc5_other/pseudobulk_logfc_metrics.csv
42
+ logFC_pearson Other 1006: PBISC 5-seed mean / scSemiProfiler,0.102 / 0.266,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle/per_celltype_seed_1006.csv ; /home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle/metrics_1006/panel_2980_diffusion_f016k_e16/pbmc5_other/pseudobulk_logfc_metrics.csv
43
+ top50_overlap_count T cell 1006: PBISC 5-seed mean / scSemiProfiler,25.4 / 17,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle/per_celltype_seed_1006.csv ; /home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle/metrics_1006/panel_2980_diffusion_f016k_e16/pbmc5_other/top50_deg_overlap.csv
44
+ top50_overlap_count B cell 1006: PBISC 5-seed mean / scSemiProfiler,17.8 / 13,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle/per_celltype_seed_1006.csv ; /home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle/metrics_1006/panel_2980_diffusion_f016k_e16/pbmc5_other/top50_deg_overlap.csv
45
+ top50_overlap_count Monocyte 1006: PBISC 5-seed mean / scSemiProfiler,19.0 / 8,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle/per_celltype_seed_1006.csv ; /home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle/metrics_1006/panel_2980_diffusion_f016k_e16/pbmc5_other/top50_deg_overlap.csv
46
+ top50_overlap_count NK cell 1006: PBISC 5-seed mean / scSemiProfiler,11.4 / 5,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle/per_celltype_seed_1006.csv ; /home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle/metrics_1006/panel_2980_diffusion_f016k_e16/pbmc5_other/top50_deg_overlap.csv
47
+ top50_overlap_count DC 1006: PBISC 5-seed mean / scSemiProfiler,2.6 / 9,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle/per_celltype_seed_1006.csv ; /home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle/metrics_1006/panel_2980_diffusion_f016k_e16/pbmc5_other/top50_deg_overlap.csv
48
+ top50_overlap_count Other 1006: PBISC 5-seed mean / scSemiProfiler,0.0 / 4,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle/per_celltype_seed_1006.csv ; /home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle/metrics_1006/panel_2980_diffusion_f016k_e16/pbmc5_other/top50_deg_overlap.csv
49
+ Other truth top list size (top-50 panel),12,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle/metrics_1006/panel_2980_diffusion_f016k_e16/pbmc5_other/top50_deg_overlap.csv
50
+ logFC r seed SD T cell 1006,0.018,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle/per_celltype_seed_1006.csv
51
+ logFC r seed SD B cell 1006,0.0361,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle/per_celltype_seed_1006.csv
52
+ logFC r seed SD Monocyte 1006,0.0334,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle/per_celltype_seed_1006.csv
53
+ logFC r seed SD NK cell 1006,0.0241,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle/per_celltype_seed_1006.csv
54
+ logFC r seed SD DC 1006,0.0574,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle/per_celltype_seed_1006.csv
55
+ logFC r seed SD Other 1006,0.0561,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle/per_celltype_seed_1006.csv
56
+ Other logFC r 1006: broadcast / PBISC 5-seed / scSemiProfiler,0.485 / 0.102 / 0.266,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle_broadcast/tables/per_celltype_logfc_top50.csv
57
+ mean logFC r 1006 (6 types incl. Other): broadcast / PBISC 5-seed / scSemiProfiler,0.677 / 0.371 / 0.318,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle_broadcast/tables/summary_mean_r_top50.csv
58
+ "broadcast r per type 1006 (T,B,Mono,NK,DC) range",0.66-0.82,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle_broadcast/tables/per_celltype_logfc_top50.csv
59
+ partial r 1006: PBISC 5-seed mean / scSemiProfiler,0.208 / 0.167,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle_broadcast/tables/residual_specificity_summary.csv
paper-releases/pbisc-diffusion/updates/20260930T090852Z-summary-deck-final-path-story/diffusion/dataset/server_1/model8/presentations/2026-09-30--paper-summary--r00/data/sec04_sle_per_celltype.csv ADDED
@@ -0,0 +1,25 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ axis_genes,metric,celltype,method,value,seed_sd,real_cell_share,source
2
+ 1006,logFC_pearson,T cell,PBISC 6k 5-seed mean,0.5939658914718996,0.017984822057591335,0.6304826438515959,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle/per_celltype_seed_1006.csv
3
+ 1006,logFC_pearson,T cell,scSemiProfiler,0.4732406545923902,,0.6304826438515959,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle/metrics_1006/panel_2980_diffusion_f016k_e16/pbmc5_other/pseudobulk_logfc_metrics.csv
4
+ 1006,logFC_pearson,B cell,PBISC 6k 5-seed mean,0.4284912263950824,0.03606402307061042,0.09972171240430132,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle/per_celltype_seed_1006.csv
5
+ 1006,logFC_pearson,B cell,scSemiProfiler,0.3389517989307964,,0.09972171240430132,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle/metrics_1006/panel_2980_diffusion_f016k_e16/pbmc5_other/pseudobulk_logfc_metrics.csv
6
+ 1006,logFC_pearson,Monocyte,PBISC 6k 5-seed mean,0.44946236830281927,0.033404376214340586,0.17633639754915817,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle/per_celltype_seed_1006.csv
7
+ 1006,logFC_pearson,Monocyte,scSemiProfiler,0.2919853598203729,,0.17633639754915817,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle/metrics_1006/panel_2980_diffusion_f016k_e16/pbmc5_other/pseudobulk_logfc_metrics.csv
8
+ 1006,logFC_pearson,NK cell,PBISC 6k 5-seed mean,0.3607223505080821,0.024088206588902265,0.06370755516981913,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle/per_celltype_seed_1006.csv
9
+ 1006,logFC_pearson,NK cell,scSemiProfiler,0.2561452598619544,,0.06370755516981913,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle/metrics_1006/panel_2980_diffusion_f016k_e16/pbmc5_other/pseudobulk_logfc_metrics.csv
10
+ 1006,logFC_pearson,DC,PBISC 6k 5-seed mean,0.2929133213063715,0.05744012029427325,0.014133347134911756,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle/per_celltype_seed_1006.csv
11
+ 1006,logFC_pearson,DC,scSemiProfiler,0.2809317373955735,,0.014133347134911756,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle/metrics_1006/panel_2980_diffusion_f016k_e16/pbmc5_other/pseudobulk_logfc_metrics.csv
12
+ 1006,logFC_pearson,Other,PBISC 6k 5-seed mean,0.10213249694534068,0.0561122628197401,0.015618343890213751,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle/per_celltype_seed_1006.csv
13
+ 1006,logFC_pearson,Other,scSemiProfiler,0.2662074091651877,,0.015618343890213751,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle/metrics_1006/panel_2980_diffusion_f016k_e16/pbmc5_other/pseudobulk_logfc_metrics.csv
14
+ 1006,top50_overlap_count,T cell,PBISC 6k 5-seed mean,25.4,0.8944271909999159,0.6304826438515959,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle/per_celltype_seed_1006.csv
15
+ 1006,top50_overlap_count,T cell,scSemiProfiler,17.0,,0.6304826438515959,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle/metrics_1006/panel_2980_diffusion_f016k_e16/pbmc5_other/top50_deg_overlap.csv
16
+ 1006,top50_overlap_count,B cell,PBISC 6k 5-seed mean,17.8,1.3038404810405297,0.09972171240430132,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle/per_celltype_seed_1006.csv
17
+ 1006,top50_overlap_count,B cell,scSemiProfiler,13.0,,0.09972171240430132,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle/metrics_1006/panel_2980_diffusion_f016k_e16/pbmc5_other/top50_deg_overlap.csv
18
+ 1006,top50_overlap_count,Monocyte,PBISC 6k 5-seed mean,19.0,1.0,0.17633639754915817,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle/per_celltype_seed_1006.csv
19
+ 1006,top50_overlap_count,Monocyte,scSemiProfiler,8.0,,0.17633639754915817,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle/metrics_1006/panel_2980_diffusion_f016k_e16/pbmc5_other/top50_deg_overlap.csv
20
+ 1006,top50_overlap_count,NK cell,PBISC 6k 5-seed mean,11.4,0.8944271909999157,0.06370755516981913,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle/per_celltype_seed_1006.csv
21
+ 1006,top50_overlap_count,NK cell,scSemiProfiler,5.0,,0.06370755516981913,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle/metrics_1006/panel_2980_diffusion_f016k_e16/pbmc5_other/top50_deg_overlap.csv
22
+ 1006,top50_overlap_count,DC,PBISC 6k 5-seed mean,2.6,2.4083189157584592,0.014133347134911756,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle/per_celltype_seed_1006.csv
23
+ 1006,top50_overlap_count,DC,scSemiProfiler,9.0,,0.014133347134911756,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle/metrics_1006/panel_2980_diffusion_f016k_e16/pbmc5_other/top50_deg_overlap.csv
24
+ 1006,top50_overlap_count,Other,PBISC 6k 5-seed mean,0.0,0.0,0.015618343890213751,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle/per_celltype_seed_1006.csv
25
+ 1006,top50_overlap_count,Other,scSemiProfiler,4.0,,0.015618343890213751,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle/metrics_1006/panel_2980_diffusion_f016k_e16/pbmc5_other/top50_deg_overlap.csv
paper-releases/pbisc-diffusion/updates/20260930T090852Z-summary-deck-final-path-story/diffusion/dataset/server_1/model8/presentations/2026-09-30--paper-summary--r00/data/sec05_behcet_direction.csv ADDED
@@ -0,0 +1,53 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ arm,metric,depth,seed,value_pp,source
2
+ raw,share_CD16_gap,native,s0,-3.71728205407723,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/input_path_compare/immicro_behcet/tables/behcet_per_seed.csv
3
+ raw,share_CD16_gap,native,s1,-3.67730020369536,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/input_path_compare/immicro_behcet/tables/behcet_per_seed.csv
4
+ raw,share_CD16_gap,native,s2,-4.4575983421542595,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/input_path_compare/immicro_behcet/tables/behcet_per_seed.csv
5
+ raw,share_CD16_gap,native,s3,-4.17810981360363,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/input_path_compare/immicro_behcet/tables/behcet_per_seed.csv
6
+ raw,share_CD16_gap,native,s4,-3.82711651517914,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/input_path_compare/immicro_behcet/tables/behcet_per_seed.csv
7
+ raw,share_CD16_gap,native,mean,-3.9714813857419236,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/input_path_compare/immicro_behcet/tables/behcet_per_seed.csv
8
+ raw,share_CD16_gap,native,sd,0.3357849335712864,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/input_path_compare/immicro_behcet/tables/behcet_per_seed.csv
9
+ raw,share_CD16_gap,native,n_positive,0.0,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/input_path_compare/immicro_behcet/tables/behcet_per_seed.csv
10
+ raw,A_share_gap,native,s0,-0.58012704310586,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/input_path_compare/immicro_behcet/tables/behcet_per_seed.csv
11
+ raw,A_share_gap,native,s1,-0.7239740366798,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/input_path_compare/immicro_behcet/tables/behcet_per_seed.csv
12
+ raw,A_share_gap,native,s2,-0.96156534857789,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/input_path_compare/immicro_behcet/tables/behcet_per_seed.csv
13
+ raw,A_share_gap,native,s3,-0.6823499803064199,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/input_path_compare/immicro_behcet/tables/behcet_per_seed.csv
14
+ raw,A_share_gap,native,s4,-0.89482367175406,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/input_path_compare/immicro_behcet/tables/behcet_per_seed.csv
15
+ raw,A_share_gap,native,mean,-0.768568016084806,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/input_path_compare/immicro_behcet/tables/behcet_per_seed.csv
16
+ raw,A_share_gap,native,sd,0.1566210665330723,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/input_path_compare/immicro_behcet/tables/behcet_per_seed.csv
17
+ raw,A_share_gap,native,n_positive,0.0,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/input_path_compare/immicro_behcet/tables/behcet_per_seed.csv
18
+ pseudo_ceiling,share_CD16_gap,native,s0,3.50173499869764,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/input_path_compare/immicro_behcet/tables/behcet_per_seed.csv
19
+ pseudo_ceiling,share_CD16_gap,native,s1,4.849376499536881,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/input_path_compare/immicro_behcet/tables/behcet_per_seed.csv
20
+ pseudo_ceiling,share_CD16_gap,native,s2,7.679695492811691,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/input_path_compare/immicro_behcet/tables/behcet_per_seed.csv
21
+ pseudo_ceiling,share_CD16_gap,native,s3,6.444680690058149,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/input_path_compare/immicro_behcet/tables/behcet_per_seed.csv
22
+ pseudo_ceiling,share_CD16_gap,native,s4,4.9489672438587,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/input_path_compare/immicro_behcet/tables/behcet_per_seed.csv
23
+ pseudo_ceiling,share_CD16_gap,native,mean,5.484890984992612,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/input_path_compare/immicro_behcet/tables/behcet_per_seed.csv
24
+ pseudo_ceiling,share_CD16_gap,native,sd,1.609531274083029,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/input_path_compare/immicro_behcet/tables/behcet_per_seed.csv
25
+ pseudo_ceiling,share_CD16_gap,native,n_positive,5.0,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/input_path_compare/immicro_behcet/tables/behcet_per_seed.csv
26
+ pseudo_ceiling,A_share_gap,native,s0,0.91889501270414,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/input_path_compare/immicro_behcet/tables/behcet_per_seed.csv
27
+ pseudo_ceiling,A_share_gap,native,s1,1.1533706059820201,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/input_path_compare/immicro_behcet/tables/behcet_per_seed.csv
28
+ pseudo_ceiling,A_share_gap,native,s2,2.37181897456489,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/input_path_compare/immicro_behcet/tables/behcet_per_seed.csv
29
+ pseudo_ceiling,A_share_gap,native,s3,3.08725345866561,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/input_path_compare/immicro_behcet/tables/behcet_per_seed.csv
30
+ pseudo_ceiling,A_share_gap,native,s4,1.56522549819188,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/input_path_compare/immicro_behcet/tables/behcet_per_seed.csv
31
+ pseudo_ceiling,A_share_gap,native,mean,1.819312710021708,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/input_path_compare/immicro_behcet/tables/behcet_per_seed.csv
32
+ pseudo_ceiling,A_share_gap,native,sd,0.8988503965096267,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/input_path_compare/immicro_behcet/tables/behcet_per_seed.csv
33
+ pseudo_ceiling,A_share_gap,native,n_positive,5.0,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/input_path_compare/immicro_behcet/tables/behcet_per_seed.csv
34
+ observed,share_CD16_gap,native,-,4.93513411070403,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/input_path_compare/immicro_behcet/tables/behcet_per_seed.csv
35
+ observed,A_share_gap,native,-,1.32412529640814,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/input_path_compare/immicro_behcet/tables/behcet_per_seed.csv
36
+ raw,A_share_gap,common,mean,-0.08125579979224,"/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/refcal_scoring/behcet/out/summary/seeds_stats.csv (family raw, metric E_share_common)"
37
+ raw,A_share_gap,common,sd,0.08703702366411001,"/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/refcal_scoring/behcet/out/summary/seeds_stats.csv (family raw, metric E_share_common)"
38
+ raw,A_share_gap,common,n_positive,1.0,"/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/refcal_scoring/behcet/out/summary/seeds_stats.csv (family raw, metric E_share_common)"
39
+ observed,A_share_gap,common,-,1.2147155970764398,"/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/refcal_scoring/behcet/out/summary/comparison_table.csv (arm_id obs_f01_common, A_gap)"
40
+ raw,share_CD16_gap,common,s0,-3.5943603625374902,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/refcal_scoring/behcet/out/summary/comparison_table.csv (arm_id gen_f016k_common_rl)
41
+ observed,share_CD16_gap,common,-,4.93513411070403,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/refcal_scoring/behcet/out/summary/comparison_table.csv (arm_id obs_f01_common)
42
+ raw,A_share_gap,common,seed_pooled_perm_p,0.6028383381324558,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/refcal_scoring/behcet/out/summary/SUMMARY.json seeds.seed_pooled.raw.E_share_common
43
+ observed,share_CD16_gap,native,mw_p_descriptive,0.0285714285714285,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/behcet_probe/analysis/out/rules_groups/c1q_by_monocyte_subtype_tests.csv
44
+ observed,A_share_gap,native,mw_p_descriptive,0.4857142857142857,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/behcet_probe/analysis/out/rules_groups/c1q_by_monocyte_subtype_tests.csv
45
+ raw,mono_library_BD_over_HC,native,s0,0.741,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/input_path_compare/immicro_behcet/tables/behcet_monocyte_depth_by_group.csv
46
+ pseudo_ceiling,mono_library_BD_over_HC,native,s0,0.77,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/input_path_compare/immicro_behcet/tables/behcet_monocyte_depth_by_group.csv
47
+ observed,mono_library_BD_over_HC,native,s0,0.964,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/input_path_compare/immicro_behcet/tables/behcet_monocyte_depth_by_group.csv
48
+ raw,n_BD_donors,-,-,9.0,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/input_path_compare/immicro_behcet/tables/behcet_per_seed.csv (column n_BD)
49
+ raw,n_HC_donors,-,-,10.0,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/input_path_compare/immicro_behcet/tables/behcet_per_seed.csv (column n_HC)
50
+ pseudo_ceiling,n_BD_donors,-,-,4.0,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/input_path_compare/immicro_behcet/tables/behcet_per_seed.csv (column n_BD)
51
+ pseudo_ceiling,n_HC_donors,-,-,4.0,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/input_path_compare/immicro_behcet/tables/behcet_per_seed.csv (column n_HC)
52
+ observed,n_BD_donors,-,-,4.0,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/input_path_compare/immicro_behcet/tables/behcet_per_seed.csv (column n_BD)
53
+ observed,n_HC_donors,-,-,4.0,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/input_path_compare/immicro_behcet/tables/behcet_per_seed.csv (column n_HC)