Archive 4 checkpoints (1-4)
Browse files- paper-releases/pbisc-diffusion/updates/20261015T121654Z-x1-nine-core40-deck/diffusion/dataset/server_1/model8/presentations/2026-09-30--paper-summary--r00/data/x1_priority_20261015/builds/20261015T120743086141Z/sources/33e0302b4d8bb1cf/metrics.csv +25 -0
- paper-releases/pbisc-diffusion/updates/20261015T121654Z-x1-nine-core40-deck/diffusion/dataset/server_1/model8/presentations/2026-09-30--paper-summary--r00/data/x1_priority_20261015/builds/20261015T120743086141Z/sources/98a1a66c0ff314a6/imperial_eskd-disease-draw2.json +628 -0
- paper-releases/pbisc-diffusion/updates/20261015T121654Z-x1-nine-core40-deck/diffusion/dataset/server_1/model8/presentations/2026-09-30--paper-summary--r00/data/x1_priority_20261015/builds/20261015T120743086141Z/sources/c2620874b8a5fde3/summary.json +1887 -0
- paper-releases/pbisc-diffusion/updates/20261015T121654Z-x1-nine-core40-deck/diffusion/dataset/server_1/model8/presentations/2026-09-30--paper-summary--r00/data/x1_priority_20261015/builds/20261015T120743086141Z/sources/e1e16b5f780a7a2c/manifest.json +153 -0
paper-releases/pbisc-diffusion/updates/20261015T121654Z-x1-nine-core40-deck/diffusion/dataset/server_1/model8/presentations/2026-09-30--paper-summary--r00/data/x1_priority_20261015/builds/20261015T120743086141Z/sources/33e0302b4d8bb1cf/metrics.csv
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| 1 |
+
dataset,design,unit,label,set,real_side,mode,n_real,n_gen,precision_k3,coverage_k3,density_k3,expected_coverage_identical_k3,precision_k5,coverage_k5,density_k5,expected_coverage_identical_k5,precision_k10,coverage_k10,density_k10,expected_coverage_identical_k10,c2st_knn_auc,c2st_knn_auc_sd,c2st_rf_auc,c2st_rf_auc_sd,nn1_acc,nn1_acc_real,nn1_acc_gen,mmd2_bw0.5,mmd2_bw1,mmd2_bw2,mmd2_sum,mmd_bandwidth_m,seconds
|
| 2 |
+
ye2026_sepsis,scored,strict,Real vs real control (held-out real cells),real_R2,R1,raw,11550,11550,0.8730735930735931,0.9232900432900433,1.343896103896104,0.8750324682351671,0.9374891774891775,0.9863203463203464,1.3265454545454545,0.9687702904505108,0.9806926406926407,0.9997402597402597,1.3077229437229438,0.9990257609379009,0.515187777590375,0.0053962735531301815,0.5946101085062123,0.003119260231140606,0.5060606060606061,0.41783549783549784,0.5942857142857143,0.00010640162574421241,1.4265804671564908e-05,-4.2571677076885805e-06,0.00011641026270808874,27.82667328158684,40.2
|
| 3 |
+
ye2026_sepsis,scored,strict,Real vs real control (held-out real cells),real_R2,R1,dm,11550,11550,0.8677056277056278,0.9256277056277056,1.3341991341991342,0.8750324682351671,0.9348051948051948,0.9862337662337662,1.3143030303030303,0.9687702904505108,0.9794805194805195,0.9998268398268398,1.302865800865801,0.9990257609379009,0.5090376492194675,0.007559064453103984,0.595297989168119,0.003571870861446085,0.5036796536796537,0.4162770562770563,0.5910822510822511,0.00010460450032334645,1.4164742226263627e-05,-4.969612207306184e-06,0.00011379963034230389,27.82667328158684,40.0
|
| 4 |
+
ye2026_sepsis,scored,strict,Real vs real control (out-of-sample: R2 vs R3),real_R3,R2,raw,11550,11550,,,,,,,,,,,,,0.49975047319203164,0.0039381828111575475,0.49281679503757425,0.01120715597306584,0.5017748917748918,0.49705627705627703,0.5064935064935064,-6.30326922835267e-05,-3.9835239048269244e-05,-1.3536960939752873e-05,-0.00011640489227154882,27.82667328158684,35.0
|
| 5 |
+
ye2026_sepsis,scored,strict,Real vs real control (out-of-sample: R2 vs R3),real_R3,R2,dm,11550,11550,,,,,,,,,,,,,0.49734744476302917,0.0054872638297803755,0.4934464871347988,0.009973369630694362,0.4976190476190476,0.489004329004329,0.5062337662337663,-6.680888699639453e-05,-4.1288141783724086e-05,-1.3720039674591789e-05,-0.00012181706845471041,27.82667328158684,35.6
|
| 6 |
+
ye2026_sepsis,scored,strict,,lora,R1,raw,11550,11550,0.6076190476190476,0.4070995670995671,0.5674747474747476,0.8750324682351671,0.73991341991342,0.5284848484848484,0.596121212121212,0.9687702904505108,0.8816450216450217,0.6935064935064935,0.6371515151515151,0.9990257609379009,0.9340252618953917,0.0031258062556902807,0.9378812053747119,0.0021352397087890927,0.8355411255411256,0.8025108225108225,0.8685714285714285,0.021994126769488753,0.013066433542673339,0.004007952463682907,0.039068512775845,27.82667328158684,27.1
|
| 7 |
+
ye2026_sepsis,scored,strict,,lora,R1,dm,11550,11550,0.6595670995670996,0.596017316017316,0.878903318903319,0.8750324682351671,0.7721212121212121,0.7270995670995671,0.8884155844155843,0.9687702904505108,0.8900432900432901,0.8696103896103896,0.9176883116883117,0.9990257609379009,0.8693149303798655,0.0016392891970060382,0.902240194149285,0.0016535688895024266,0.7574891774891774,0.6932467532467532,0.8217316017316018,0.011638778472814582,0.006942364837122739,0.0023098522313107495,0.02089099554124807,27.82667328158684,27.1
|
| 8 |
+
ye2026_sepsis,scored,strict,,lora,R2,raw,11550,11550,,,,,,,,,,,,,0.9326399430295534,0.003541481415941684,0.9339607953374187,0.0025454092060646274,0.8319047619047619,0.841038961038961,0.8227705627705628,0.020550639113874725,0.0125691959976717,0.003967166269597255,0.03708700138114368,27.82667328158684,24.7
|
| 9 |
+
ye2026_sepsis,scored,strict,,lora,R2,dm,11550,11550,,,,,,,,,,,,,0.8694859916418359,0.005152567332361731,0.8971387342815914,0.0032663133545406224,0.766017316017316,0.7317748917748917,0.8002597402597402,0.010873940758546696,0.0065734884435291185,0.0022034003865052387,0.019650829588581054,27.82667328158684,24.9
|
| 10 |
+
ye2026_sepsis,scored,strict,,pairedcal,R1,raw,11550,11550,0.6006926406926407,0.22796536796536795,0.4567388167388167,0.8750324682351671,0.7466666666666667,0.3077056277056277,0.48133333333333334,0.9687702904505108,0.8936796536796536,0.4442424242424242,0.5188398268398269,0.9990257609379009,0.9822484398718165,0.0016334333935210622,0.9862797548771575,0.0009493431851630746,0.9335497835497836,0.898961038961039,0.9681385281385282,0.05850979724207184,0.031364084116339175,0.00949309247786001,0.09936697383627102,27.82667328158684,28.0
|
| 11 |
+
ye2026_sepsis,scored,strict,,pairedcal,R1,dm,11550,11550,0.6661471861471862,0.41255411255411256,0.7236075036075036,0.8750324682351671,0.7894372294372294,0.5293506493506493,0.7644675324675324,0.9687702904505108,0.9125541125541126,0.6888311688311688,0.8171428571428571,0.9990257609379009,0.9588930867112687,0.0029519905697361405,0.9697830625363093,0.0030104718472908423,0.8758008658008658,0.804069264069264,0.9475324675324676,0.04003819323409086,0.02323029949922839,0.007803664292888923,0.07107215702620817,27.82667328158684,28.2
|
| 12 |
+
ye2026_sepsis,scored,strict,,pairedcal,R2,raw,11550,11550,,,,,,,,,,,,,0.9837705627705627,0.0013156855824325731,0.9870458199808849,0.0004612613890120951,0.9367099567099567,0.9196536796536796,0.9537662337662338,0.05670647946785967,0.0307392272691287,0.0094194933543148,0.09686520009130317,27.82667328158684,25.7
|
| 13 |
+
ye2026_sepsis,scored,strict,,pairedcal,R2,dm,11550,11550,,,,,,,,,,,,,0.9572665804613857,0.0023509537770567937,0.9713581454620416,0.0008854347585239823,0.8803030303030303,0.824935064935065,0.9356709956709957,0.039337486553679746,0.022860883877286353,0.007678759782296707,0.0698771302132628,27.82667328158684,26.0
|
| 14 |
+
ye2026_sepsis,scored,strict,,scsemi,R1,raw,11550,11550,0.34476190476190477,0.040952380952380955,0.16473304473304473,0.8750324682351671,0.48008658008658006,0.05818181818181818,0.168987012987013,0.9687702904505108,0.6630303030303031,0.08190476190476191,0.17412987012987013,0.9990257609379009,0.9974277281160399,0.00045101111921805825,0.999547965742771,0.00010041247305350361,0.9897402597402597,0.9825108225108226,0.996969696969697,0.22126828842559987,0.14917393829184467,0.05019613477616813,0.42063836149361267,27.82667328158684,27.2
|
| 15 |
+
ye2026_sepsis,scored,strict,,scsemi,R1,dm,11550,11550,0.1825974025974026,0.07056277056277056,0.09696969696969697,0.8750324682351671,0.2788744588744589,0.10034632034632035,0.10941991341991342,0.9687702904505108,0.42363636363636364,0.1618181818181818,0.12026839826839826,0.9990257609379009,0.9960614306328592,0.0007195277891846192,0.9990052660182531,9.657557099092804e-05,0.9831168831168832,0.9722077922077922,0.994025974025974,0.14794139527478356,0.09230684941099732,0.0307395701276707,0.2709878148134516,27.82667328158684,28.3
|
| 16 |
+
ye2026_sepsis,scored,strict,,scsemi,R2,raw,11550,11550,,,,,,,,,,,,,0.9978664005547122,0.0008131033643608319,0.9995807799703904,4.964463010272483e-05,0.9913419913419913,0.987012987012987,0.9956709956709957,0.22359418912402768,0.15000393854340976,0.05047563662540866,0.4240737642928461,27.82667328158684,24.6
|
| 17 |
+
ye2026_sepsis,scored,strict,,scsemi,R2,dm,11550,11550,,,,,,,,,,,,,0.9959457468937989,0.0007524422320075618,0.9989569910608871,0.00018686629557198846,0.9821645021645021,0.970995670995671,0.9933333333333333,0.14833916254942847,0.09182010488884118,0.03041402340190924,0.2705732908401789,27.82667328158684,26.5
|
| 18 |
+
ye2026_sepsis,scored,strict,,raw,R1,raw,11550,11550,0.3141125541125541,0.03532467532467533,0.17821067821067824,0.8750324682351671,0.4380952380952381,0.0477056277056277,0.19717748917748917,0.9687702904505108,0.6367099567099567,0.07515151515151515,0.23293506493506494,0.9990257609379009,0.9971267967241992,0.0006559320728034894,0.9990913588575927,0.0001160531256186646,0.9893073593073594,0.9844155844155844,0.9941991341991342,0.15101842979972896,0.18748962632284716,0.07897149424490091,0.417479550367477,27.82667328158684,27.0
|
| 19 |
+
ye2026_sepsis,scored,strict,,raw,R1,dm,11550,11550,0.29714285714285715,0.03316017316017316,0.16730158730158728,0.8750324682351671,0.3974025974025974,0.04632034632034632,0.16941991341991341,0.9687702904505108,0.5984415584415584,0.07090909090909091,0.19512554112554112,0.9990257609379009,0.9974422518318622,0.0006078399264568216,0.9989353085586853,0.00019688517306939594,0.9882683982683983,0.9843290043290043,0.9922077922077922,0.1574803392964238,0.18961389683956675,0.07860586405691272,0.4257001001929033,27.82667328158684,26.7
|
| 20 |
+
ye2026_sepsis,scored,strict,,raw,R2,raw,11550,11550,,,,,,,,,,,,,0.9975036262438861,0.000701983849063399,0.9990022863139746,0.0003088866748755433,0.9893939393939394,0.9877056277056278,0.9910822510822511,0.1569605391554304,0.18992433092409722,0.07947025145832898,0.4263551215378566,27.82667328158684,25.0
|
| 21 |
+
ye2026_sepsis,scored,strict,,raw,R2,dm,11550,11550,,,,,,,,,,,,,0.9977432956653735,0.0006695563519800253,0.9988825359344841,0.0003748928387841644,0.9885714285714285,0.9875324675324675,0.9896103896103896,0.1629647997514442,0.19203428919942633,0.07914094703186447,0.434140035982735,27.82667328158684,24.7
|
| 22 |
+
ye2026_sepsis,scored,strict,,refcal,R1,raw,11550,11550,0.48424242424242425,0.09246753246753246,0.2888023088023088,0.8750324682351671,0.64995670995671,0.12632034632034633,0.3091082251082251,0.9687702904505108,0.8290909090909091,0.1870995670995671,0.32171428571428573,0.9990257609379009,0.992598039766871,0.0013881239283653599,0.9962621015348289,0.0004676653513482647,0.970995670995671,0.9557575757575758,0.9862337662337662,0.13615139462249798,0.08140651695410961,0.02576711206616955,0.24332502364277714,27.82667328158684,27.6
|
| 23 |
+
ye2026_sepsis,scored,strict,,refcal,R1,dm,11550,11550,0.47385281385281386,0.19593073593073593,0.3295815295815296,0.8750324682351671,0.6204329004329004,0.26251082251082253,0.35077056277056273,0.9687702904505108,0.8045021645021645,0.37974025974025977,0.38337662337662337,0.9990257609379009,0.986466145686925,0.0009737984432641704,0.9906763366503626,0.0005281950440243859,0.9380952380952381,0.911082251082251,0.9651082251082251,0.10032301052734965,0.06047851381230096,0.019881831826855434,0.18068335616650605,27.82667328158684,26.8
|
| 24 |
+
ye2026_sepsis,scored,strict,,refcal,R2,raw,11550,11550,,,,,,,,,,,,,0.9945259646558346,0.00034267419751614255,0.9966136691591236,0.0005704584618727074,0.9741991341991342,0.9672727272727273,0.9811255411255412,0.13636172303171495,0.08156778728470937,0.025923206386254893,0.24385271670267922,27.82667328158684,25.3
|
| 25 |
+
ye2026_sepsis,scored,strict,,refcal,R2,dm,11550,11550,,,,,,,,,,,,,0.9870176158617717,0.0011769802687448616,0.9908014654897773,0.00035576315842635167,0.9409090909090909,0.9207792207792208,0.961038961038961,0.10099707549300219,0.06076061873742877,0.019944492900335842,0.1817021871307668,27.82667328158684,25.0
|
paper-releases/pbisc-diffusion/updates/20261015T121654Z-x1-nine-core40-deck/diffusion/dataset/server_1/model8/presentations/2026-09-30--paper-summary--r00/data/x1_priority_20261015/builds/20261015T120743086141Z/sources/98a1a66c0ff314a6/imperial_eskd-disease-draw2.json
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@@ -0,0 +1,628 @@
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| 1 |
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{
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| 2 |
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| 3 |
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| 4 |
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paper-releases/pbisc-diffusion/updates/20261015T121654Z-x1-nine-core40-deck/diffusion/dataset/server_1/model8/presentations/2026-09-30--paper-summary--r00/data/x1_priority_20261015/builds/20261015T120743086141Z/sources/c2620874b8a5fde3/summary.json
ADDED
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|
| 1 |
+
{
|
| 2 |
+
"schema": "paired_ft_scores.v1",
|
| 3 |
+
"dataset": "ye2026_sepsis",
|
| 4 |
+
"written_utc": "2026-10-12T17:41:38.799629+00:00",
|
| 5 |
+
"command": [
|
| 6 |
+
"/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/tools/score_ft.py",
|
| 7 |
+
"--dataset",
|
| 8 |
+
"ye2026_sepsis",
|
| 9 |
+
"--out",
|
| 10 |
+
"/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/scores/ye2026_sepsis/disease/draw4/score",
|
| 11 |
+
"--donors",
|
| 12 |
+
"/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/scores/ye2026_sepsis/disease/draw4/test_sample_ids.txt",
|
| 13 |
+
"--threads",
|
| 14 |
+
"4",
|
| 15 |
+
"--arm",
|
| 16 |
+
"lora=/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/generated/ye2026_sepsis/disease/draw4/lora.npz",
|
| 17 |
+
"--arm",
|
| 18 |
+
"pairedcal=/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/generated/ye2026_sepsis/disease/draw4/pairedcal.npz",
|
| 19 |
+
"--arm",
|
| 20 |
+
"scsemi=/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/generated/ye2026_sepsis/disease/draw4/scsemi.npz",
|
| 21 |
+
"--arm",
|
| 22 |
+
"raw=/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/generated/global/ye2026_sepsis/raw.npz",
|
| 23 |
+
"--arm",
|
| 24 |
+
"refcal=/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/generated/global/ye2026_sepsis/refcal.npz",
|
| 25 |
+
"--case-groups",
|
| 26 |
+
"adult_sepsis,ped_sepsis",
|
| 27 |
+
"--control-groups",
|
| 28 |
+
"adult_HC,adult_ICU_ctrl,ped_HC,ped_ICU_ctrl"
|
| 29 |
+
],
|
| 30 |
+
"arms": [
|
| 31 |
+
"lora",
|
| 32 |
+
"pairedcal",
|
| 33 |
+
"scsemi",
|
| 34 |
+
"raw",
|
| 35 |
+
"refcal"
|
| 36 |
+
],
|
| 37 |
+
"donors": [
|
| 38 |
+
"Abd-PS04",
|
| 39 |
+
"Abd-PS05",
|
| 40 |
+
"Abd-PS07",
|
| 41 |
+
"Abd-PS19",
|
| 42 |
+
"Abd-PS20",
|
| 43 |
+
"Abd-PS23",
|
| 44 |
+
"Abd-PS27",
|
| 45 |
+
"Abd-S103",
|
| 46 |
+
"Abd-S120",
|
| 47 |
+
"Abd-S123",
|
| 48 |
+
"Abd-S156",
|
| 49 |
+
"Abd-S39",
|
| 50 |
+
"Abd-S42",
|
| 51 |
+
"Abd-S47",
|
| 52 |
+
"Abd-S51",
|
| 53 |
+
"Abd-S54",
|
| 54 |
+
"Abd-S57",
|
| 55 |
+
"Abd-S66",
|
| 56 |
+
"Abd-S79",
|
| 57 |
+
"Abd-S83",
|
| 58 |
+
"Abd-S98",
|
| 59 |
+
"HC01",
|
| 60 |
+
"HC05",
|
| 61 |
+
"HC07",
|
| 62 |
+
"HC09",
|
| 63 |
+
"HC12",
|
| 64 |
+
"HC13",
|
| 65 |
+
"HC16",
|
| 66 |
+
"IC10",
|
| 67 |
+
"IC15",
|
| 68 |
+
"IC16",
|
| 69 |
+
"IC19",
|
| 70 |
+
"IC22",
|
| 71 |
+
"PHC01",
|
| 72 |
+
"PHC02",
|
| 73 |
+
"PHC03",
|
| 74 |
+
"PHC05",
|
| 75 |
+
"PIC01",
|
| 76 |
+
"PIC02",
|
| 77 |
+
"PIC04",
|
| 78 |
+
"PIC05",
|
| 79 |
+
"Res-PS02",
|
| 80 |
+
"Res-PS03",
|
| 81 |
+
"Res-PS12",
|
| 82 |
+
"Res-PS16",
|
| 83 |
+
"Res-PS21",
|
| 84 |
+
"Res-PS25",
|
| 85 |
+
"Res-PS26",
|
| 86 |
+
"Res-S10",
|
| 87 |
+
"Res-S125",
|
| 88 |
+
"Res-S127",
|
| 89 |
+
"Res-S136",
|
| 90 |
+
"Res-S139",
|
| 91 |
+
"Res-S146",
|
| 92 |
+
"Res-S149",
|
| 93 |
+
"Res-S150",
|
| 94 |
+
"Res-S164",
|
| 95 |
+
"Res-S166",
|
| 96 |
+
"Res-S174",
|
| 97 |
+
"Res-S177",
|
| 98 |
+
"Res-S184",
|
| 99 |
+
"Res-S19",
|
| 100 |
+
"Res-S26",
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paper-releases/pbisc-diffusion/updates/20261015T121654Z-x1-nine-core40-deck/diffusion/dataset/server_1/model8/presentations/2026-09-30--paper-summary--r00/data/x1_priority_20261015/builds/20261015T120743086141Z/sources/e1e16b5f780a7a2c/manifest.json
ADDED
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@@ -0,0 +1,153 @@
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| 1 |
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{
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