Archive 4 checkpoints (1-4)

paper-releases/pbisc-diffusion/updates/20261002T002920Z-deck-extra-metrics-scsemi-prep/diffusion/dataset/server_1/model8/presentations/2026-09-30--paper-summary--r00/tools/sync_sec09_text.py

@@ -0,0 +1,79 @@
+#!/usr/bin/env python3
+"""Copy generated slide text into data/slides_spec.json.
+
+sec09_paired_validation.py regenerates titles, keywords and footnotes from the
+scores (the scSemiProfiler verdicts can change when the missing draws arrive).
+Run after that script and before generate_deck.py:
+
+    python3 tools/sec09_paired_validation.py
+    python3 tools/sync_sec09_text.py
+    python3 generate_deck.py
+
+Two kinds of spec slides are synced:
+  - "sec09_index": i       -> slide i of data/sec09_slide_text.json (section 9 main slides)
+  - "text_source": {"file": "data/<x>_slide_text.json", "index": i}
+                           -> slide i of that file (added 2026-10-02: data/sec09_extra_slide_text.json from
+                              tools/sec09_extra_metrics.py, data/sec07_rank_sweep_slide_text.json from
+                              tools/sec07_rank_sweep.py)
+
+Titles, keywords, footnote_full, numbers and (from footnote_short) the on-slide footnote
+are overwritten; if footnote_full changed, the script lists the slide so the
+short copy can be checked by hand (the deck build fails if it exceeds 2 lines).
+"""
+import json
+import sys
+from pathlib import Path
+
+DECK = Path(__file__).resolve().parents[1]
+SPEC = Path(sys.argv[1]) if len(sys.argv) > 1 else DECK / "data" / "slides_spec.json"
+SRC = DECK / "data" / "sec09_slide_text.json"
+
+
+def copy_text(s: dict, g: dict, review: list) -> None:
+    figs = [str(Path(f).relative_to(DECK)) for f in g["figures"]]
+    have = [str(Path(f).relative_to(DECK)) if Path(f).is_absolute() else f for f in s["figures"]]
+    if figs != have:
+        raise SystemExit(f"figure mismatch for '{g['title']}': {figs} vs {s['figures']}")
+    s["figures"] = figs
+    s["title"] = g["title"]
+    s["keywords"] = g["keywords"]
+    if s.get("footnote_full", s.get("footnote")) != g["footnote"]:
+        review.append(g["title"])
+    s["footnote_full"] = g["footnote"]
+    if g.get("footnote_short"):
+        s["footnote"] = g["footnote_short"]
+    s["numbers"] = g["numbers"]   # quoted numbers + sources, kept in step with the slide text (2026-10-01)
+
+
+def main() -> None:
+    spec = json.loads(SPEC.read_text())
+    src = json.loads(SRC.read_text())["slides"]
+    review = []
+    n = 0
+    other: dict = {}
+    for s in spec["slides"]:
+        i = s.get("sec09_index")
+        if i is not None:
+            copy_text(s, src[i], review)
+            n += 1
+            continue
+        ts = s.get("text_source")
+        if ts:
+            f = DECK / ts["file"]
+            g = json.loads(f.read_text())["slides"]
+            copy_text(s, g[int(ts["index"])], review)
+            other.setdefault(ts["file"], set()).add(int(ts["index"]))
+    if n != len(src):
+        raise SystemExit(f"spec has {n} sec09 slides, source has {len(src)}")
+    for f, idx in other.items():
+        m = len(json.loads((DECK / f).read_text())["slides"])
+        if idx != set(range(m)):
+            raise SystemExit(f"spec uses slides {sorted(idx)} of {f}, which has {m}")
+    SPEC.write_text(json.dumps(spec, indent=2, ensure_ascii=False) + "\n")
+    print(f"synced {n} section 9 slides and " + ", ".join(f"{len(v)} from {k}" for k, v in other.items()))
+    for t in review:
+        print(f"REVIEW short footnote (source footnote changed): {t}")
+
+
+if __name__ == "__main__":
+    main()