Archive 4 checkpoints (1-4)

paper-releases/pbisc-diffusion/updates/20261005T175437Z-deck-supplementary-other-tissues-review/diffusion/dataset/server_1/model8/presentations/2026-09-30--paper-summary--r00/data/sec08_cross_cohort.csv

@@ -0,0 +1,31 @@
+cohort,arm,score_arm,steps,comp_l1,coverage,precision,logfc_r,source,source_disease,wall_seconds,minutes,run_receipt
+immicro,zs,zs_K1000,,0.4457108278919341,0.1864797507788162,0.6705919003115265,,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_crosscohort_20261002/scores/immicro/zs_K1000/summary.json,,,,
+immicro,xcal,xcalL_K1000,,0.17220690476643966,0.5724610591900312,0.901993769470405,,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_crosscohort_20261002/scores/immicro/xcalL_K1000/summary.json,,,,
+immicro,lora16sat,locoL_lora16sat_s28500_K1000,28500.0,0.17491854684276595,0.45165109034267914,0.8407476635514018,,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_crosscohort_20261002/scores/immicro/locoL_lora16sat_s28500_K1000/summary.json,,1266.7,21.111666666666668,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_crosscohort_20261002/runs/hoL_immicro/K1000/lora16sat/RUN.json
+immicro,lora64sat,locoL_lora64sat_s39000_K1000,39000.0,0.19858024117626522,0.38174454828660437,0.8349532710280374,,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_crosscohort_20261002/scores/immicro/locoL_lora64sat_s39000_K1000/summary.json,,1625.7,27.095000000000002,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_crosscohort_20261002/runs/hoL_immicro/K1000/lora64sat/RUN.json
+immicro,fullsat,locoL_fullsat_s65000_K1000,65000.0,0.21255123747092092,0.34579439252336447,0.7041744548286605,,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_crosscohort_20261002/scores/immicro/locoL_fullsat_s65000_K1000/summary.json,,3523.7,58.72833333333333,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_crosscohort_20261002/runs/hoL_immicro/K1000/fullsat/RUN.json
+immicro,own,real_lora__raw,,0.16172890350786212,0.7842990654205607,0.9241121495327103,,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/immicro/pooled/summary.json,,,,
+ye2026_sepsis,zs,zs_K1000,,0.5094583598384997,0.07398373983739838,0.6169918699186991,-0.021848803748335324,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_crosscohort_20261002/scores/ye2026_sepsis/zs_K1000/summary.json,,,,
+ye2026_sepsis,xcal,xcalL_K1000,,0.4438043638834868,0.4638211382113821,0.8960975609756098,0.09668769745340702,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_crosscohort_20261002/scores/ye2026_sepsis/xcalL_K1000/summary.json,,,,
+ye2026_sepsis,lora16sat,locoL_lora16sat_s26750_K1000,26750.0,0.4913211548128607,0.3413821138211382,0.8611382113821138,0.10171004353585707,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_crosscohort_20261002/scores/ye2026_sepsis/locoL_lora16sat_s26750_K1000/summary.json,,1218.6,20.31,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_crosscohort_20261002/runs/hoL_ye2026_sepsis/K1000/lora16sat/RUN.json
+ye2026_sepsis,lora64sat,locoL_lora64sat_s59000_K1000,59000.0,0.5696031573329058,0.2891869918699187,0.828130081300813,0.2279128935245801,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_crosscohort_20261002/scores/ye2026_sepsis/locoL_lora64sat_s59000_K1000/summary.json,,2653.6,44.22666666666667,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_crosscohort_20261002/runs/hoL_ye2026_sepsis/K1000/lora64sat/RUN.json
+ye2026_sepsis,fullsat,locoL_fullsat_s108500_K1000,108500.0,0.5846173784329263,0.3456910569105691,0.8208130081300813,0.07297860484594258,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_crosscohort_20261002/scores/ye2026_sepsis/locoL_fullsat_s108500_K1000/summary.json,,5600.4,93.33999999999999,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_crosscohort_20261002/runs/hoL_ye2026_sepsis/K1000/fullsat/RUN.json
+ye2026_sepsis,own,real_lora__raw,,0.3618246783833512,0.829349593495935,0.9256910569105691,0.5267612711229187,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/pooled/summary.json,,,,
+imperial_eskd,zs,zs_K1000,,0.8029956289662181,0.11315049825398177,0.4935695426283962,0.6419400899561818,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_crosscohort_20261002/scores/imperial_eskd/zs_K1000/summary.json,,,,
+imperial_eskd,xcal,xcalL_K1000,,0.6511665403698953,0.6370411378928541,0.8453709224086534,0.6892227232868162,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_crosscohort_20261002/scores/imperial_eskd/xcalL_K1000/summary.json,,,,
+imperial_eskd,lora16sat,locoL_lora16sat_s40000_K1000,40000.0,0.6354385520845358,0.6838003577208074,0.8195639213014224,0.49115540391304124,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_crosscohort_20261002/scores/imperial_eskd/locoL_lora16sat_s40000_K1000/summary.json,,1813.0,30.216666666666665,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_crosscohort_20261002/runs/hoL_imperial_eskd/K1000/lora16sat/RUN.json
+imperial_eskd,lora64sat,locoL_lora64sat_s69250_K1000,69250.0,0.5944384838913485,0.7228941316753258,0.8223319989779405,0.5804458634433078,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_crosscohort_20261002/scores/imperial_eskd/locoL_lora64sat_s69250_K1000/summary.json,,3227.5,53.791666666666664,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_crosscohort_20261002/runs/hoL_imperial_eskd/K1000/lora64sat/RUN.json
+imperial_eskd,fullsat,locoL_fullsat_s93000_K1000,93000.0,0.5795732789528253,0.6076143429009454,0.8022314964653777,0.45945747768103096,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_crosscohort_20261002/scores/imperial_eskd/locoL_fullsat_s93000_K1000/summary.json,,4939.6,82.32666666666667,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_crosscohort_20261002/runs/hoL_imperial_eskd/K1000/fullsat/RUN.json
+imperial_eskd,own,real_lora__raw,,0.37638560875745664,0.8500127757431224,0.847457627118644,0.8187448084273437,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/imperial_eskd/pooled/summary.json,,,,
+giroux2022,zs,zs_K1000,,0.33717201742780784,0.2927777777777778,0.9044444444444445,0.33988455976970655,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_crosscohort_20261002/scores/giroux2022/zs_K1000/summary.json,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_crosscohort_20261002/scores_nosex/giroux2022/zs_K1000/summary.json,,,
+giroux2022,xcal,xcalL_K1000,,0.20217456364466954,0.8911111111111111,0.9880555555555556,0.23805572307713363,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_crosscohort_20261002/scores/giroux2022/xcalL_K1000/summary.json,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_crosscohort_20261002/scores_nosex/giroux2022/xcalL_K1000/summary.json,,,
+giroux2022,lora16sat,locoL_lora16sat_s35750_K1000,35750.0,0.43086767828477845,0.8188888888888889,0.9947222222222222,0.299296791280024,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_crosscohort_20261002/scores/giroux2022/locoL_lora16sat_s35750_K1000/summary.json,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_crosscohort_20261002/scores_nosex/giroux2022/locoL_lora16sat_s35750_K1000/summary.json,1706.2,28.436666666666667,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_crosscohort_20261002/runs/hoL_giroux2022/K1000/lora16sat/RUN.json
+giroux2022,lora64sat,locoL_lora64sat_s69250_K1000,69250.0,0.4098228307587457,0.8086111111111111,0.9944444444444445,0.27821710171594927,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_crosscohort_20261002/scores/giroux2022/locoL_lora64sat_s69250_K1000/summary.json,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_crosscohort_20261002/scores_nosex/giroux2022/locoL_lora64sat_s69250_K1000/summary.json,3200.6,53.343333333333334,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_crosscohort_20261002/runs/hoL_giroux2022/K1000/lora64sat/RUN.json
+giroux2022,fullsat,locoL_fullsat_s120000_K1000,120000.0,0.46479005295114834,0.7755555555555556,0.9844444444444445,0.19614193186548523,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_crosscohort_20261002/scores/giroux2022/locoL_fullsat_s120000_K1000/summary.json,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_crosscohort_20261002/scores_nosex/giroux2022/locoL_fullsat_s120000_K1000/summary.json,6427.8,107.13000000000001,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_crosscohort_20261002/runs/hoL_giroux2022/K1000/fullsat/RUN.json
+giroux2022,own,real_lora__raw,,0.2580442754044374,0.9280555555555555,0.9980555555555556,0.46094848304079133,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/giroux2022/pooled/summary.json,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores_nosex/giroux2022/pooled/summary.json,,,
+ji2025_chili,zs,zs_K1000,,0.7246556382795132,0.05898989898989899,0.7212121212121212,0.07494970415326974,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_crosscohort_20261002/scores/ji2025_chili/zs_K1000/summary.json,,,,
+ji2025_chili,xcal,xcalL_K1000,,0.5647530791873953,0.07111111111111111,0.6357575757575757,0.12672949998502117,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_crosscohort_20261002/scores/ji2025_chili/xcalL_K1000/summary.json,,,,
+ji2025_chili,lora16sat,locoL_lora16sat_s40000_K1000,40000.0,0.7395379838267597,0.3387878787878788,0.9105050505050505,0.045342224880778284,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_crosscohort_20261002/scores/ji2025_chili/locoL_lora16sat_s40000_K1000/summary.json,,1834.4,30.573333333333334,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_crosscohort_20261002/runs/hoL_ji2025_chili/K1000/lora16sat/RUN.json
+ji2025_chili,lora64sat,locoL_lora64sat_s51750_K1000,51750.0,0.6199837283023538,0.39515151515151514,0.9470707070707071,0.16414840904557088,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_crosscohort_20261002/scores/ji2025_chili/locoL_lora64sat_s51750_K1000/summary.json,,2467.9,41.13166666666667,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_crosscohort_20261002/runs/hoL_ji2025_chili/K1000/lora64sat/RUN.json
+ji2025_chili,fullsat,locoL_fullsat_s86750_K1000,86750.0,1.0304931953192484,0.08121212121212121,0.5107070707070707,0.1386792074228318,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_crosscohort_20261002/scores/ji2025_chili/locoL_fullsat_s86750_K1000/summary.json,,4648.0,77.46666666666667,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_crosscohort_20261002/runs/hoL_ji2025_chili/K1000/fullsat/RUN.json
+ji2025_chili,own,real_lora__raw,,0.5044992874562503,0.8569696969696969,0.9709090909090909,0.47928798340225065,/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ji2025_chili/pooled/summary.json,,,,