Archive 4 checkpoints (1-4)
Browse files- paper-releases/pbisc-diffusion/updates/20261015T121654Z-x1-nine-core40-deck/diffusion/dataset/server_1/model8/plans/paper_figures_strictpairs_20261012/recoveries/x1_priority_completion_20261015/evaluation/units/immicro/healthy/fold1/n10/lora/scoring_support.json +69 -0
- paper-releases/pbisc-diffusion/updates/20261015T121654Z-x1-nine-core40-deck/diffusion/dataset/server_1/model8/plans/paper_figures_strictpairs_20261012/recoveries/x1_priority_completion_20261015/evaluation/units/immicro/healthy/fold1/n40/lora/receipts/score.json +52 -0
- paper-releases/pbisc-diffusion/updates/20261015T121654Z-x1-nine-core40-deck/diffusion/dataset/server_1/model8/plans/paper_figures_strictpairs_20261012/recoveries/x1_priority_completion_20261015/evaluation/units/immicro/healthy/fold1/n40/lora/score/per_donor.csv +23 -0
- paper-releases/pbisc-diffusion/updates/20261015T121654Z-x1-nine-core40-deck/diffusion/dataset/server_1/model8/plans/paper_figures_strictpairs_20261012/recoveries/x1_priority_completion_20261015/evaluation/units/immicro/healthy/fold1/n40/lora/score/summary.json +212 -0
paper-releases/pbisc-diffusion/updates/20261015T121654Z-x1-nine-core40-deck/diffusion/dataset/server_1/model8/plans/paper_figures_strictpairs_20261012/recoveries/x1_priority_completion_20261015/evaluation/units/immicro/healthy/fold1/n10/lora/scoring_support.json
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{
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"schema": "pbisc.paper.strict-score-binding.v1",
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"support_sha256": "92447ba4a03867ba6b52a7739bf4db0eecf05fd367e725c0dbe07ae927b6f511",
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"cohort": "immicro",
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"unit": "fold1_n10",
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"test_sample_ids": [
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"HS2",
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"HS12",
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"HS16",
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"HS17",
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"HS21",
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"HS35",
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"HS36",
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"HS39",
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"HS44",
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"HS46",
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"HS47",
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"HS48",
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"HS51",
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"HS56",
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"HS57",
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"HS65",
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"HS68",
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"HS72",
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"HS84",
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"HS92",
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"HS96",
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"HS109"
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],
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"test_donor_ids": [
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"HS2",
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"HS12",
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"HS16",
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"HS17",
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"HS21",
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"HS35",
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"HS36",
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"HS39",
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"HS44",
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"HS46",
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"HS47",
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"HS48",
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"HS51",
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"HS56",
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"HS57",
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"HS65",
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| 47 |
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"HS68",
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| 48 |
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"HS72",
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| 49 |
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"HS84",
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| 50 |
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"HS92",
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| 51 |
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"HS96",
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| 52 |
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"HS109"
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| 53 |
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],
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| 54 |
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"arm_bindings": {
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| 55 |
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"lora": {
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| 56 |
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"arm": "lora",
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| 57 |
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"npz": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/generated/immicro/healthy/fold1/n10/lora.npz",
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"npz_sha256": "0b9df7ea40aec3de2eff15bc7e72d86ce01e29402db33c1d9d65a96791837ed5",
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"receipt": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/generated/immicro/healthy/fold1/n10/lora.log",
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| 60 |
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"receipt_sha256": "e6ed4efca5fb2cc23d063ff693683bdf6befa9b26865594d818885c3dc16f1b9",
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| 61 |
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"source_binding": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/runs/immicro/healthy/fold1/n10/lora/RUN.json",
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| 62 |
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"source_binding_sha256": "d8b50029ef5a70f9030045787e8662c9b265b967f2d523621f28feb7a3f57a78",
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| 63 |
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"condition_npz": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/data/immicro/healthy/fold1/n10/test_raw.npz",
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| 64 |
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"condition_sha256": "f64c30e0d9cd130f95402573ee1b53826b57447fb3d7e8de727481c86f243d9d",
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| 65 |
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"checkpoint_sha256": "90ee6e41f72a535d0eea032bb42a9c44eaea99b53aeed913c4e7f8fe82d52faa",
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| 66 |
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"support_sha256": "92447ba4a03867ba6b52a7739bf4db0eecf05fd367e725c0dbe07ae927b6f511"
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}
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}
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}
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paper-releases/pbisc-diffusion/updates/20261015T121654Z-x1-nine-core40-deck/diffusion/dataset/server_1/model8/plans/paper_figures_strictpairs_20261012/recoveries/x1_priority_completion_20261015/evaluation/units/immicro/healthy/fold1/n40/lora/receipts/score.json
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{
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"state": "completed",
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"stage": "score",
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"at": "2026-10-15T12:00:51.942729+00:00",
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"outputs": [
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{
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| 7 |
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"path": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/recoveries/x1_priority_completion_20261015/evaluation/units/immicro/healthy/fold1/n40/lora/score/arms/lora/generated_cells.parquet",
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"sha256": "d43a517d3983e9df98ab61b20acd6fb3fdcddcfdd85abd8d849743f6519fe8c6",
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"bytes": 289760
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},
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{
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"path": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/recoveries/x1_priority_completion_20261015/evaluation/units/immicro/healthy/fold1/n40/lora/score/arms/lora/labels/labels.manifest.json",
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"sha256": "02ea993c4eda25dc479ac8e58d45470e99239dfe94de05467328e515aec43e9f",
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"bytes": 5110
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},
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{
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"path": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/recoveries/x1_priority_completion_20261015/evaluation/units/immicro/healthy/fold1/n40/lora/score/arms/lora/labels/labels.parquet",
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"sha256": "5bce9c29d4abe1605e45f5873b2cf7f5cdfb9bfb8576fb2afc14f672474a141c",
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"bytes": 816659
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},
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{
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"path": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/recoveries/x1_priority_completion_20261015/evaluation/units/immicro/healthy/fold1/n40/lora/score/per_donor.csv",
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"sha256": "924523165f953c8bd7e5043e84a8cce8e2c6c9a051fe656edebd291acb0d5979",
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"bytes": 9292
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},
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{
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"path": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/recoveries/x1_priority_completion_20261015/evaluation/units/immicro/healthy/fold1/n40/lora/score/summary.json",
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"sha256": "00c2e97ded2e6deef8a6992c8c97af21b82c4025da7dd0b2862cb7df676e6da7",
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"bytes": 7560
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},
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{
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"path": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/recoveries/x1_priority_completion_20261015/evaluation/units/immicro/healthy/fold1/n40/lora/scoring_support.json",
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| 33 |
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"sha256": "a3d55329bc8794364e0996eb82b9d36a9cf8308e224011d23d6704172163c136",
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| 34 |
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"bytes": 2098
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}
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],
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"support_sha256": "e4909b732024af62d8332b9fc37adb0f7bda2024884b74ac3b4059ecf371d2c5",
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| 38 |
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"binding": {
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| 39 |
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"arm": "lora",
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| 40 |
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"npz": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/generated/immicro/healthy/fold1/n40/lora.npz",
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| 41 |
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"npz_sha256": "16acb65838878e0a60dfef81b5726f004ea18047eb3b3b39dbe802dabcf99a12",
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"receipt": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/generated/immicro/healthy/fold1/n40/lora.log",
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| 43 |
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"receipt_sha256": "4bf51543893e2127af73bb028b3e0407006058a462dede00aa34df585f14c0ae",
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| 44 |
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"source_binding": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/runs/immicro/healthy/fold1/n40/lora/RUN.json",
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| 45 |
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"source_binding_sha256": "c79ee9490f0e78c1dd9db7b3899d2d07346d57afd1c4ff1df715e57b6a7c6cff",
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| 46 |
+
"condition_npz": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/data/immicro/healthy/fold1/n40/test_raw.npz",
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| 47 |
+
"condition_sha256": "f64c30e0d9cd130f95402573ee1b53826b57447fb3d7e8de727481c86f243d9d",
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| 48 |
+
"checkpoint_sha256": "e4877d6f68387128ce43a3d2de497754090c9b95d621f001c24a6e45e19062f8",
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| 49 |
+
"support_sha256": "e4909b732024af62d8332b9fc37adb0f7bda2024884b74ac3b4059ecf371d2c5"
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| 50 |
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},
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| 51 |
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"reuse": {}
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| 52 |
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}
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paper-releases/pbisc-diffusion/updates/20261015T121654Z-x1-nine-core40-deck/diffusion/dataset/server_1/model8/plans/paper_figures_strictpairs_20261012/recoveries/x1_priority_completion_20261015/evaluation/units/immicro/healthy/fold1/n40/lora/score/per_donor.csv
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arm,donor,group,n_generated_cells,n_observed_cells,n_reference_cells,gen_T cell,obs_T cell,gen_B cell,obs_B cell,gen_Monocyte,obs_Monocyte,gen_NK cell,obs_NK cell,gen_DC,obs_DC,gen_Other,obs_Other,comp_l1,comp_l1_obs_loo_null,pb_r,pb_own_rank,pb_top1,precision,coverage,precision_depth_matched,coverage_depth_matched,mono_pct_gen,mono_pct_obs,median_umi_gen,median_umi_obs
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| 2 |
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lora,HS2,DB2,1500,5144,150,0.7506666666666667,0.661353032659409,0.058666666666666666,0.05909797822706065,0.07333333333333333,0.1386080870917574,0.07,0.11372472783825817,0.036,0.02041213063763608,0.011333333333333334,0.006804043545878694,0.21886158631415245,0.07059674896297101,0.9033964385306849,6,False,0.9933333333333333,1.0,1.0,1.0,7.333333333333333,13.860808709175739,2282.0,1429.0
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| 3 |
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lora,HS12,DB2,1500,5035,150,0.7773333333333333,0.6798411122144985,0.06666666666666667,0.06971201588877855,0.07466666666666667,0.1529294935451837,0.051333333333333335,0.064746772591857,0.022,0.025223435948361468,0.008,0.007547169811320755,0.19589010261502812,0.07455854626908714,0.9014507203478264,4,False,1.0,0.9933333333333333,1.0,0.9933333333333333,7.466666666666668,15.29294935451837,2755.0,1550.0
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| 4 |
+
lora,HS16,DB4,1500,4842,150,0.644,0.5846757538207352,0.10133333333333333,0.08736059479553904,0.164,0.23048327137546468,0.050666666666666665,0.07166460140437836,0.032,0.020859149111937217,0.008,0.004956629491945477,0.17496241222635278,0.1895789331257937,0.90341669565558,19,False,0.9933333333333333,0.8133333333333334,1.0,0.9866666666666667,16.400000000000002,23.04832713754647,2839.0,2066.0
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| 5 |
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lora,HS17,DB6,1500,1753,150,0.7533333333333333,0.7221905305191101,0.08733333333333333,0.07529948659440959,0.09,0.14432401597261837,0.04,0.03194523673702225,0.018666666666666668,0.02053622361665716,0.010666666666666666,0.005704506560182544,0.1123871458452177,0.15543768341508316,0.8987046273865814,15,False,0.9866666666666667,0.7866666666666666,0.9933333333333333,0.9733333333333334,9.0,14.432401597261837,2938.0,2194.0
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| 6 |
+
lora,HS21,DB1,1500,4748,150,0.6753333333333333,0.5945661331086773,0.08133333333333333,0.06887110362257792,0.136,0.1941870261162595,0.058666666666666666,0.11141533277169334,0.042,0.02401010951979781,0.006666666666666667,0.0069502948609941025,0.22243864083122716,0.12734556769243,0.9070608039657642,3,False,0.98,0.9933333333333333,0.9933333333333333,0.9933333333333333,13.600000000000001,19.41870261162595,2551.0,1849.5
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| 7 |
+
lora,HS35,DB7,1500,1658,150,0.6846666666666666,0.6363088057901085,0.10533333333333333,0.08443908323281062,0.09333333333333334,0.1513872135102533,0.08066666666666666,0.097708082026538,0.027333333333333334,0.024728588661037394,0.008666666666666666,0.005428226779252111,0.15019059107358265,0.02594557967972921,0.9024967723344446,12,False,0.9933333333333333,0.88,0.9933333333333333,0.9866666666666667,9.333333333333334,15.13872135102533,2545.5,2204.0
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| 8 |
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lora,HS36,DB5,1500,4213,150,0.7093333333333334,0.5829575124614289,0.094,0.10064087348682649,0.10466666666666667,0.14573937811535723,0.058,0.15286019463565156,0.022,0.015428435793971042,0.012,0.0023736055067647755,0.2851475591423372,0.17486337298048768,0.9055708874209946,11,False,0.9933333333333333,0.8133333333333334,0.9866666666666667,1.0,10.466666666666667,14.573937811535723,2789.0,2180.0
|
| 9 |
+
lora,HS39,DB6,1500,2056,150,0.5973333333333334,0.6731517509727627,0.07533333333333334,0.04571984435797665,0.22066666666666668,0.17607003891050585,0.04933333333333333,0.08025291828793775,0.044,0.02091439688715953,0.013333333333333334,0.0038910505836575876,0.21347600518806745,0.10310873840821068,0.9113002356407536,8,False,0.9933333333333333,0.9266666666666666,1.0,1.0,22.066666666666666,17.607003891050585,2872.5,2023.0
|
| 10 |
+
lora,HS44,DB5,1500,3849,150,0.7253333333333334,0.719147830605352,0.07333333333333333,0.06832943621719927,0.114,0.15146791374382956,0.06,0.03715250714471291,0.02,0.019225772928033256,0.007333333333333333,0.004676539360872954,0.07493582748765919,0.14862681044520484,0.9002753740147622,16,False,0.9866666666666667,0.8666666666666667,0.9933333333333333,0.9733333333333334,11.4,15.146791374382957,2443.0,1852.0
|
| 11 |
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lora,HS46,DB1,1500,4117,150,0.6806666666666666,0.6315278115132378,0.07266666666666667,0.060480932717998544,0.118,0.13990769978139422,0.076,0.13577847947534613,0.03866666666666667,0.028175856205975226,0.014,0.004129220306048093,0.1633723585134807,0.09434064598251264,0.9063930361283555,2,False,0.98,1.0,0.9933333333333333,1.0,11.799999999999999,13.990769978139422,2443.5,1777.0
|
| 12 |
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lora,HS47,DB3,1500,4401,150,0.7406666666666667,0.609634174051352,0.07666666666666666,0.13542376732560782,0.064,0.09702340377187003,0.082,0.12315382867530107,0.025333333333333333,0.029993183367416496,0.011333333333333334,0.004771642808452625,0.2751883662803908,0.19711610918969746,0.8951405356610571,4,False,0.9933333333333333,0.9866666666666667,1.0,0.9933333333333333,6.4,9.702340377187003,2420.5,2179.0
|
| 13 |
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lora,HS48,DB5,1500,3855,150,0.7413333333333333,0.7058365758754864,0.09333333333333334,0.09909208819714656,0.07133333333333333,0.0840466926070039,0.06933333333333333,0.0874189364461738,0.016,0.019974059662775615,0.008666666666666666,0.0036316472114137485,0.08106355382619965,0.1700324236682078,0.8978551554035458,11,False,0.9933333333333333,0.9266666666666666,0.9933333333333333,1.0,7.133333333333333,8.40466926070039,2629.5,1918.0
|
| 14 |
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lora,HS51,DB3,1500,3803,150,0.7173333333333334,0.7068104128319748,0.10733333333333334,0.09019195372074677,0.07933333333333334,0.10544307125953195,0.05,0.06731527741256903,0.03333333333333333,0.02576912963449908,0.012666666666666666,0.004470155140678412,0.08685003067753531,0.1561907464595402,0.9038811348727072,1,True,0.9866666666666667,0.9666666666666667,0.9866666666666667,1.0,7.933333333333334,10.544307125953194,2800.0,2114.0
|
| 15 |
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lora,HS56,DB1,1500,4121,150,0.738,0.6112594030575104,0.06,0.04707595243872846,0.09933333333333333,0.13977190002426595,0.06333333333333334,0.16743508857073525,0.028666666666666667,0.028391167192429023,0.010666666666666666,0.006066488716330988,0.28908064385666904,0.16231403810792758,0.902338471739828,3,False,0.9866666666666667,0.9933333333333333,0.9933333333333333,0.9933333333333333,9.933333333333334,13.977190002426596,2499.5,1751.0
|
| 16 |
+
lora,HS57,DB2,1500,3932,150,0.7213333333333334,0.6584435401831129,0.07066666666666667,0.03128179043743642,0.116,0.18972533062054933,0.056,0.08214649033570702,0.02666666666666667,0.030010172939979655,0.009333333333333334,0.00839267548321465,0.20643065445913872,0.11862246718002292,0.9106634759889043,1,True,1.0,1.0,1.0,1.0,11.600000000000001,18.972533062054932,2803.0,1676.5
|
| 17 |
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lora,HS65,DB2,1500,4394,150,0.6646666666666666,0.6096950386891216,0.09,0.10969503868912153,0.148,0.16909421939007738,0.052,0.07055075102412381,0.032,0.03413746017296313,0.013333333333333334,0.006827492034592627,0.12295493855257164,0.1308382928488044,0.9086903425591911,3,False,1.0,0.9866666666666667,1.0,0.9933333333333333,14.799999999999999,16.90942193900774,2752.0,1449.5
|
| 18 |
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lora,HS68,DB6,1500,2659,150,0.708,0.6938698758931929,0.076,0.07070327190673185,0.13666666666666666,0.156825874388868,0.04066666666666666,0.05039488529522377,0.03,0.02181271154569387,0.008666666666666666,0.006393380970289583,0.05977485270151683,0.10807608449171868,0.9035240677092312,11,False,0.9933333333333333,0.9066666666666666,0.9933333333333333,1.0,13.666666666666666,15.6825874388868,2860.5,2248.0
|
| 19 |
+
lora,HS72,DB4,1500,4520,150,0.77,0.7331858407079646,0.09133333333333334,0.08517699115044247,0.074,0.11438053097345133,0.042,0.0418141592920354,0.017333333333333333,0.01836283185840708,0.005333333333333333,0.007079646017699115,0.0863126843657818,0.20149714056663054,0.8928545776891048,16,False,1.0,0.9066666666666666,1.0,1.0,7.3999999999999995,11.438053097345133,2843.0,1974.0
|
| 20 |
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lora,HS84,DB3,1500,3090,150,0.6726666666666666,0.6702265372168285,0.07066666666666667,0.04692556634304207,0.136,0.17184466019417477,0.06333333333333334,0.08608414239482201,0.03933333333333333,0.020711974110032363,0.018,0.004207119741100324,0.11719093851132685,0.0881265446567977,0.9063413906939737,2,False,1.0,0.9866666666666667,0.9933333333333333,0.9933333333333333,13.600000000000001,17.184466019417478,2510.0,2083.0
|
| 21 |
+
lora,HS92,DB7,1500,2115,150,0.7506666666666667,0.5810874704491725,0.09,0.11678486997635934,0.05266666666666667,0.05484633569739953,0.07933333333333334,0.23356973995271868,0.016,0.007565011820330969,0.011333333333333334,0.006146572104018913,0.3664018912529552,0.3791565281986444,0.8851512520294573,14,False,0.98,0.92,0.9866666666666667,0.9666666666666667,5.266666666666667,5.484633569739953,2476.5,1976.0
|
| 22 |
+
lora,HS96,DB7,1500,1801,150,0.5833333333333334,0.5147140477512493,0.09666666666666666,0.06885063853414769,0.21866666666666668,0.25818989450305385,0.05266666666666667,0.10716268739589117,0.042,0.04553026096612993,0.006666666666666667,0.00555247084952804,0.1950990190634833,0.29377781550504867,0.9069822502535603,14,False,1.0,0.8266666666666667,0.9933333333333333,0.9933333333333333,21.866666666666667,25.818989450305384,2613.0,2252.0
|
| 23 |
+
lora,HS109,DB5,1500,4265,150,0.684,0.6801875732708089,0.08066666666666666,0.04126611957796014,0.14066666666666666,0.17327080890973037,0.056,0.06424384525205158,0.026,0.03610785463071512,0.012666666666666666,0.00492379835873388,0.10191168425166085,0.1364133017609488,0.9048033335877802,16,False,1.0,0.8466666666666667,1.0,0.96,14.066666666666666,17.327080890973036,2826.0,2074.0
|
paper-releases/pbisc-diffusion/updates/20261015T121654Z-x1-nine-core40-deck/diffusion/dataset/server_1/model8/plans/paper_figures_strictpairs_20261012/recoveries/x1_priority_completion_20261015/evaluation/units/immicro/healthy/fold1/n40/lora/score/summary.json
ADDED
|
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|
| 1 |
+
{
|
| 2 |
+
"schema": "paired_ft_scores.v1",
|
| 3 |
+
"dataset": "immicro",
|
| 4 |
+
"written_utc": "2026-10-15T12:00:51.939211+00:00",
|
| 5 |
+
"command": [
|
| 6 |
+
"/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/tools/score_ft.py",
|
| 7 |
+
"--dataset",
|
| 8 |
+
"immicro",
|
| 9 |
+
"--out",
|
| 10 |
+
"/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/recoveries/x1_priority_completion_20261015/evaluation/units/immicro/healthy/fold1/n40/lora/score",
|
| 11 |
+
"--donors",
|
| 12 |
+
"/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/recoveries/x1_priority_completion_20261015/evaluation/units/immicro/healthy/fold1/n40/lora/test_sample_ids.txt",
|
| 13 |
+
"--threads",
|
| 14 |
+
"2",
|
| 15 |
+
"--arm",
|
| 16 |
+
"lora=/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/generated/immicro/healthy/fold1/n40/lora.npz",
|
| 17 |
+
"--no-contrast",
|
| 18 |
+
"--no-deg"
|
| 19 |
+
],
|
| 20 |
+
"arms": [
|
| 21 |
+
"lora"
|
| 22 |
+
],
|
| 23 |
+
"donors": [
|
| 24 |
+
"HS2",
|
| 25 |
+
"HS12",
|
| 26 |
+
"HS16",
|
| 27 |
+
"HS17",
|
| 28 |
+
"HS21",
|
| 29 |
+
"HS35",
|
| 30 |
+
"HS36",
|
| 31 |
+
"HS39",
|
| 32 |
+
"HS44",
|
| 33 |
+
"HS46",
|
| 34 |
+
"HS47",
|
| 35 |
+
"HS48",
|
| 36 |
+
"HS51",
|
| 37 |
+
"HS56",
|
| 38 |
+
"HS57",
|
| 39 |
+
"HS65",
|
| 40 |
+
"HS68",
|
| 41 |
+
"HS72",
|
| 42 |
+
"HS84",
|
| 43 |
+
"HS92",
|
| 44 |
+
"HS96",
|
| 45 |
+
"HS109"
|
| 46 |
+
],
|
| 47 |
+
"n_donors": 22,
|
| 48 |
+
"reference": {
|
| 49 |
+
"cache": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scoring_cache/immicro",
|
| 50 |
+
"reference_sha256": "c5e2547be3ec3b12cb0c0b404a49e14a046ae59d40be70427f98f083a76bce17",
|
| 51 |
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"features_sha256": "735255066ce7ebbac13a1fdfd058e26f31edd60314cc02fd589b0a292dbbc838",
|
| 52 |
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"n_r1_cells": 3300,
|
| 53 |
+
"pca": {
|
| 54 |
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"n_components": 50,
|
| 55 |
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"explained_variance_ratio_sum": 0.2977375388145447,
|
| 56 |
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"n_fit_cells": 3300
|
| 57 |
+
},
|
| 58 |
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"r2_control": {
|
| 59 |
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"precision": 0.9954545454545455,
|
| 60 |
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"coverage": 1.0,
|
| 61 |
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"density": 2.5628484848484847,
|
| 62 |
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"n_query": 3300,
|
| 63 |
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"depth_matched": {
|
| 64 |
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"precision": 0.9942424242424243,
|
| 65 |
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"coverage": 1.0,
|
| 66 |
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"density": 2.5162121212121216
|
| 67 |
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}
|
| 68 |
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},
|
| 69 |
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"observed_l1_loo_null_mean": 0.1502983690725227
|
| 70 |
+
},
|
| 71 |
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"contrast_definition": {
|
| 72 |
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"enabled": false,
|
| 73 |
+
"reason": "--no-contrast"
|
| 74 |
+
},
|
| 75 |
+
"deg_definition": {
|
| 76 |
+
"enabled": false,
|
| 77 |
+
"reason": "--no-deg"
|
| 78 |
+
},
|
| 79 |
+
"headline": {
|
| 80 |
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"lora": {
|
| 81 |
+
"comp_l1": 0.17272370395619704,
|
| 82 |
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"comp_l1_obs_loo_null": 0.1502983690725227,
|
| 83 |
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"precision": 0.9924242424242424,
|
| 84 |
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"coverage": 0.923939393939394,
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| 85 |
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"precision_dm": 0.9951515151515151,
|
| 86 |
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"coverage_dm": 0.990909090909091,
|
| 87 |
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"pb_r_median": 0.9034703816824057,
|
| 88 |
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"pb_top1": 0.09090909090909091,
|
| 89 |
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"mono_pct_gen": 11.478787878787879,
|
| 90 |
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"mono_pct_obs": 15.179849365920914,
|
| 91 |
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"median_umi_gen": 2650.0,
|
| 92 |
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"median_umi_obs": 1887.0,
|
| 93 |
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"seconds": 8.1
|
| 94 |
+
}
|
| 95 |
+
},
|
| 96 |
+
"per_arm": {
|
| 97 |
+
"lora": {
|
| 98 |
+
"arm": "lora",
|
| 99 |
+
"npz": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/generated/immicro/healthy/fold1/n40/lora.npz",
|
| 100 |
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"npz_sha256": "16acb65838878e0a60dfef81b5726f004ea18047eb3b3b39dbe802dabcf99a12",
|
| 101 |
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"receipt_verified": true,
|
| 102 |
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"generation": {
|
| 103 |
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"checkpoint": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/runs/immicro/healthy/fold1/n40/lora/checkpoint_ft.pt",
|
| 104 |
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"checkpoint_sha256": "e4877d6f68387128ce43a3d2de497754090c9b95d621f001c24a6e45e19062f8",
|
| 105 |
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"input_condition_path": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/data/immicro/healthy/fold1/n40/test_raw.npz",
|
| 106 |
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"input_condition_sha256": "f64c30e0d9cd130f95402573ee1b53826b57447fb3d7e8de727481c86f243d9d",
|
| 107 |
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"seed": 20260928,
|
| 108 |
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"steps": 50,
|
| 109 |
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"support_readout": "bernoulli",
|
| 110 |
+
"weights": "ema"
|
| 111 |
+
},
|
| 112 |
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"condition_for_broadcast": null,
|
| 113 |
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"poisson": {
|
| 114 |
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"seed": 20260916,
|
| 115 |
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"rule": "whole NPZ, rows in NPZ order",
|
| 116 |
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"nnz_whole_npz": 9401682,
|
| 117 |
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"median_library_whole_npz_panel": 2651.0,
|
| 118 |
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"n_rows_whole_npz": 33000
|
| 119 |
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},
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