Archive 4 checkpoints (1-4)

paper-releases/pbisc-diffusion/updates/20261002T085943Z-deck-restructure-contrast-metrics-zeroshot-len/diffusion/dataset/server_1/model8/plans/paired_finetune_intradataset_20260927/figures/source_data/fig3_learning_curve.csv

@@ -0,0 +1,112 @@
+panel,dataset,series,kind,draw,value,n,source,note,n_train,max_steps
+3a,immicro,zs_raw,pooled,n=0,0.454866,,scores/immicro/pooled/summary.json,,,
+3a,immicro,zs_len,pooled,n=0,0.420135,,scores/immicro/zeroshot_tpm_20261002/pooled/summary.json,,,
+3a,immicro,lora,pooled,n=5,0.171451,,scores/immicro/pooled/summary.json,,,
+3a,immicro,lora,pooled,n=10,0.187881,,scores/immicro/pooled/summary.json,,,
+3a,immicro,lora,pooled,n=20,0.172324,,scores/immicro/pooled/summary.json,,,
+3a,immicro,lora,pooled,n=40,0.171385,,scores/immicro/pooled/summary.json,,,
+3a,immicro,lora,pooled,n=all,0.161729,,scores/immicro/pooled/summary.json,,,
+3a,immicro,ref_pseudo,reference,,0.204337,,scores/immicro/pooled/summary.json,,,
+3a,immicro,ref_null,reference,,0.160637,,scores/immicro/pooled/summary.json,,,
+3c,immicro,zs_raw,pooled,n=0,0.191838,,scores/immicro/pooled/summary.json,,,
+3c,immicro,zs_len,pooled,n=0,0.50486,,scores/immicro/zeroshot_tpm_20261002/pooled/summary.json,,,
+3c,immicro,lora,pooled,n=5,0.83919,,scores/immicro/pooled/summary.json,,,
+3c,immicro,lora,pooled,n=10,0.78567,,scores/immicro/pooled/summary.json,,,
+3c,immicro,lora,pooled,n=20,0.755202,,scores/immicro/pooled/summary.json,,,
+3c,immicro,lora,pooled,n=40,0.778442,,scores/immicro/pooled/summary.json,,,
+3c,immicro,lora,pooled,n=all,0.784299,,scores/immicro/pooled/summary.json,,,
+3c,immicro,ref_pseudo,reference,,0.524424,,scores/immicro/pooled/summary.json,,,
+3e,immicro,zs_raw,pooled,n=0,0.493942,,scores/immicro/pooled/per_donor.csv,,,
+3e,immicro,zs_len,pooled,n=0,0.489769,,scores/immicro/zeroshot_tpm_20261002/pooled/per_donor.csv,,,
+3e,immicro,lora,pooled,n=5,0.199274,,scores/immicro/pooled/per_donor.csv,,,
+3e,immicro,lora,pooled,n=10,0.397169,,scores/immicro/pooled/per_donor.csv,,,
+3e,immicro,lora,pooled,n=20,0.564359,,scores/immicro/pooled/per_donor.csv,,,
+3e,immicro,lora,pooled,n=40,0.699336,,scores/immicro/pooled/per_donor.csv,,,
+3e,immicro,lora,pooled,n=all,0.701926,,scores/immicro/pooled/per_donor.csv,,,
+3e,immicro,ref_pseudo,reference,,0.603544,,scores/immicro/pooled/per_donor.csv,,,
+3g,immicro,note,missing,,,,,ImMicro has no case-control contrast,,
+3i,immicro,lora_n5,fold,fold0,3250,,runs/immicro/fold0/lora_n5/RUN.json,,5,20000
+3i,immicro,lora_n5,fold,fold1,2750,,runs/immicro/fold1/lora_n5/RUN.json,,5,20000
+3i,immicro,lora_n5,fold,fold2,3000,,runs/immicro/fold2/lora_n5/RUN.json,,5,20000
+3i,immicro,lora_n5,fold,fold3,5000,,runs/immicro/fold3/lora_n5/RUN.json,,5,20000
+3i,immicro,lora_n5,fold,fold4,3500,,runs/immicro/fold4/lora_n5/RUN.json,,5,20000
+3i,immicro,lora_n10,fold,fold0,5750,,runs/immicro/fold0/lora_n10/RUN.json,,10,20000
+3i,immicro,lora_n10,fold,fold1,3250,,runs/immicro/fold1/lora_n10/RUN.json,,10,20000
+3i,immicro,lora_n10,fold,fold2,4000,,runs/immicro/fold2/lora_n10/RUN.json,,10,20000
+3i,immicro,lora_n10,fold,fold3,17000,,runs/immicro/fold3/lora_n10/RUN.json,,10,20000
+3i,immicro,lora_n10,fold,fold4,19500,,runs/immicro/fold4/lora_n10/RUN.json,,10,20000
+3i,immicro,lora_n20,fold,fold0,19750,,runs/immicro/fold0/lora_n20/RUN.json,,20,20000
+3i,immicro,lora_n20,fold,fold1,19500,,runs/immicro/fold1/lora_n20/RUN.json,,20,20000
+3i,immicro,lora_n20,fold,fold2,20000,,runs/immicro/fold2/lora_n20/RUN.json,,20,20000
+3i,immicro,lora_n20,fold,fold3,19500,,runs/immicro/fold3/lora_n20/RUN.json,,20,20000
+3i,immicro,lora_n20,fold,fold4,5250,,runs/immicro/fold4/lora_n20/RUN.json,,20,20000
+3i,immicro,lora_n40,fold,fold0,20000,,runs/immicro/fold0/lora_n40/RUN.json,,40,20000
+3i,immicro,lora_n40,fold,fold1,19500,,runs/immicro/fold1/lora_n40/RUN.json,,40,20000
+3i,immicro,lora_n40,fold,fold2,20000,,runs/immicro/fold2/lora_n40/RUN.json,,40,20000
+3i,immicro,lora_n40,fold,fold3,20000,,runs/immicro/fold3/lora_n40/RUN.json,,40,20000
+3i,immicro,lora_n40,fold,fold4,20000,,runs/immicro/fold4/lora_n40/RUN.json,,40,20000
+3i,immicro,real_lora,fold,fold0,20000,,runs/immicro/fold0/real_lora/RUN.json,,78,20000
+3i,immicro,real_lora,fold,fold1,19500,,runs/immicro/fold1/real_lora/RUN.json,,78,20000
+3i,immicro,real_lora,fold,fold2,20000,,runs/immicro/fold2/real_lora/RUN.json,,79,20000
+3i,immicro,real_lora,fold,fold3,20000,,runs/immicro/fold3/real_lora/RUN.json,,79,20000
+3i,immicro,real_lora,fold,fold4,20000,,runs/immicro/fold4/real_lora/RUN.json,,79,20000
+3b,ye2026_sepsis,zs_raw,pooled,n=0,0.510826,,scores/ye2026_sepsis/pooled/summary.json,,,
+3b,ye2026_sepsis,zs_len,pooled,n=0,0.556925,,scores/ye2026_sepsis/zeroshot_tpm_20261002/pooled/summary.json,,,
+3b,ye2026_sepsis,lora,pooled,n=5,0.428061,,scores/ye2026_sepsis/pooled/summary.json,,,
+3b,ye2026_sepsis,lora,pooled,n=10,0.389665,,scores/ye2026_sepsis/pooled/summary.json,,,
+3b,ye2026_sepsis,lora,pooled,n=20,0.380257,,scores/ye2026_sepsis/pooled/summary.json,,,
+3b,ye2026_sepsis,lora,pooled,n=40,0.364757,,scores/ye2026_sepsis/pooled/summary.json,,,
+3b,ye2026_sepsis,lora,pooled,n=all,0.361825,,scores/ye2026_sepsis/pooled/summary.json,,,
+3b,ye2026_sepsis,ref_pseudo,reference,,0.233165,,scores/ye2026_sepsis/pooled/summary.json,,,
+3b,ye2026_sepsis,ref_null,reference,,0.515468,,scores/ye2026_sepsis/pooled/summary.json,,,
+3d,ye2026_sepsis,zs_raw,pooled,n=0,0.0673171,,scores/ye2026_sepsis/pooled/summary.json,,,
+3d,ye2026_sepsis,zs_len,pooled,n=0,0.399268,,scores/ye2026_sepsis/zeroshot_tpm_20261002/pooled/summary.json,,,
+3d,ye2026_sepsis,lora,pooled,n=5,0.766667,,scores/ye2026_sepsis/pooled/summary.json,,,
+3d,ye2026_sepsis,lora,pooled,n=10,0.785854,,scores/ye2026_sepsis/pooled/summary.json,,,
+3d,ye2026_sepsis,lora,pooled,n=20,0.806667,,scores/ye2026_sepsis/pooled/summary.json,,,
+3d,ye2026_sepsis,lora,pooled,n=40,0.817561,,scores/ye2026_sepsis/pooled/summary.json,,,
+3d,ye2026_sepsis,lora,pooled,n=all,0.82935,,scores/ye2026_sepsis/pooled/summary.json,,,
+3d,ye2026_sepsis,ref_pseudo,reference,,0.48,,scores/ye2026_sepsis/pooled/summary.json,,,
+3f,ye2026_sepsis,zs_raw,pooled,n=0,-0.0118027,,scores/ye2026_sepsis/pooled/summary.json,,,
+3f,ye2026_sepsis,zs_len,pooled,n=0,0.107126,,scores/ye2026_sepsis/zeroshot_tpm_20261002/pooled/summary.json,,,
+3f,ye2026_sepsis,lora,pooled,n=5,0.294045,,scores/ye2026_sepsis/pooled/summary.json,,,
+3f,ye2026_sepsis,lora,pooled,n=10,0.422296,,scores/ye2026_sepsis/pooled/summary.json,,,
+3f,ye2026_sepsis,lora,pooled,n=20,0.367193,,scores/ye2026_sepsis/pooled/summary.json,,,
+3f,ye2026_sepsis,lora,pooled,n=40,0.475881,,scores/ye2026_sepsis/pooled/summary.json,,,
+3f,ye2026_sepsis,lora,pooled,n=all,0.526761,,scores/ye2026_sepsis/pooled/summary.json,,,
+3f,ye2026_sepsis,ref_pseudo,reference,,0.467593,,scores/ye2026_sepsis/pooled/summary.json,,,
+3f,ye2026_sepsis,ref_broadcast,reference,,0.315946,,scores/ye2026_sepsis/pooled/summary.json,,,
+3h,ye2026_sepsis,zs_raw,pooled,n=0,9,,scores/ye2026_sepsis/pooled_deg/summary.json,,,
+3h,ye2026_sepsis,zs_len,pooled,n=0,11,,scores/ye2026_sepsis/zeroshot_tpm_20261002/pooled/summary.json,,,
+3h,ye2026_sepsis,lora,pooled,n=5,5,,scores/ye2026_sepsis/pooled_deg/summary.json,,,
+3h,ye2026_sepsis,lora,pooled,n=10,8,,scores/ye2026_sepsis/pooled_deg/summary.json,,,
+3h,ye2026_sepsis,lora,pooled,n=20,18,,scores/ye2026_sepsis/pooled_deg/summary.json,,,
+3h,ye2026_sepsis,lora,pooled,n=40,22,,scores/ye2026_sepsis/pooled_deg/summary.json,,,
+3h,ye2026_sepsis,lora,pooled,n=all,23,,scores/ye2026_sepsis/pooled_deg/summary.json,,,
+3h,ye2026_sepsis,ref_pseudo,reference,,22,,scores/ye2026_sepsis/pooled_deg/summary.json,,,
+3h,ye2026_sepsis,ref_broadcast,reference,,21,,scores/ye2026_sepsis/pooled_deg/summary.json,,,
+3j,ye2026_sepsis,lora_n5,fold,fold0,2750,,runs/ye2026_sepsis/fold0/lora_n5/RUN.json,,5,20000
+3j,ye2026_sepsis,lora_n5,fold,fold1,2000,,runs/ye2026_sepsis/fold1/lora_n5/RUN.json,,5,20000
+3j,ye2026_sepsis,lora_n5,fold,fold2,2750,,runs/ye2026_sepsis/fold2/lora_n5/RUN.json,,5,20000
+3j,ye2026_sepsis,lora_n5,fold,fold3,2000,,runs/ye2026_sepsis/fold3/lora_n5/RUN.json,,5,20000
+3j,ye2026_sepsis,lora_n5,fold,fold4,3000,,runs/ye2026_sepsis/fold4/lora_n5/RUN.json,,5,20000
+3j,ye2026_sepsis,lora_n10,fold,fold0,3250,,runs/ye2026_sepsis/fold0/lora_n10/RUN.json,,10,20000
+3j,ye2026_sepsis,lora_n10,fold,fold1,2000,,runs/ye2026_sepsis/fold1/lora_n10/RUN.json,,10,20000
+3j,ye2026_sepsis,lora_n10,fold,fold2,3000,,runs/ye2026_sepsis/fold2/lora_n10/RUN.json,,10,20000
+3j,ye2026_sepsis,lora_n10,fold,fold3,2250,,runs/ye2026_sepsis/fold3/lora_n10/RUN.json,,10,20000
+3j,ye2026_sepsis,lora_n10,fold,fold4,3000,,runs/ye2026_sepsis/fold4/lora_n10/RUN.json,,10,20000
+3j,ye2026_sepsis,lora_n20,fold,fold0,3000,,runs/ye2026_sepsis/fold0/lora_n20/RUN.json,,20,20000
+3j,ye2026_sepsis,lora_n20,fold,fold1,3000,,runs/ye2026_sepsis/fold1/lora_n20/RUN.json,,20,20000
+3j,ye2026_sepsis,lora_n20,fold,fold2,3250,,runs/ye2026_sepsis/fold2/lora_n20/RUN.json,,20,20000
+3j,ye2026_sepsis,lora_n20,fold,fold3,2500,,runs/ye2026_sepsis/fold3/lora_n20/RUN.json,,20,20000
+3j,ye2026_sepsis,lora_n20,fold,fold4,4000,,runs/ye2026_sepsis/fold4/lora_n20/RUN.json,,20,20000
+3j,ye2026_sepsis,lora_n40,fold,fold0,3000,,runs/ye2026_sepsis/fold0/lora_n40/RUN.json,,40,20000
+3j,ye2026_sepsis,lora_n40,fold,fold1,3750,,runs/ye2026_sepsis/fold1/lora_n40/RUN.json,,40,20000
+3j,ye2026_sepsis,lora_n40,fold,fold2,7000,,runs/ye2026_sepsis/fold2/lora_n40/RUN.json,,40,20000
+3j,ye2026_sepsis,lora_n40,fold,fold3,4000,,runs/ye2026_sepsis/fold3/lora_n40/RUN.json,,40,20000
+3j,ye2026_sepsis,lora_n40,fold,fold4,4000,,runs/ye2026_sepsis/fold4/lora_n40/RUN.json,,40,20000
+3j,ye2026_sepsis,real_lora,fold,fold0,6500,,runs/ye2026_sepsis/fold0/real_lora/RUN.json,,58,20000
+3j,ye2026_sepsis,real_lora,fold,fold1,3750,,runs/ye2026_sepsis/fold1/real_lora/RUN.json,,58,20000
+3j,ye2026_sepsis,real_lora,fold,fold2,13000,,runs/ye2026_sepsis/fold2/real_lora/RUN.json,,58,20000
+3j,ye2026_sepsis,real_lora,fold,fold3,6250,,runs/ye2026_sepsis/fold3/real_lora/RUN.json,,58,20000
+3j,ye2026_sepsis,real_lora,fold,fold4,6750,,runs/ye2026_sepsis/fold4/real_lora/RUN.json,,59,20000