junidude14 commited on
Commit
700d0cc
·
verified ·
1 Parent(s): fd31c57

Archive 1 checkpoints (1-1)

Browse files
paper-releases/pbisc-diffusion/updates/20261015T121654Z-x1-nine-core40-deck/diffusion/dataset/server_1/model8/plans/paper_figures_strictpairs_20261012/runs/ji2025_chili/disease/draw2/lora/RUN.json ADDED
@@ -0,0 +1,187 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ {
2
+ "schema": "pbisc_sdd.ft_intradataset.run.v1",
3
+ "source_checkpoint": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/runs/f01_6k_1x_seed20260627/checkpoint_epoch_016.pt",
4
+ "source_checkpoint_sha256": "8c7cd0e83e2bc19fe03dfcbc084919a1e2f61be8cc8bc12f4caf543dfda91633",
5
+ "dataset_dir": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/data/ji2025_chili",
6
+ "condition_npz": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/data/ji2025_chili/conditions_raw_fixed.npz",
7
+ "condition_npz_sha256": "73a8fe0617391a14b876b80178cdd8ae704cfb3542be2496903eb6f3f9e48b57",
8
+ "fold": 0,
9
+ "mode": "lora",
10
+ "trainable": {
11
+ "mode": "lora",
12
+ "lora_layers": [
13
+ "time_encoder.0",
14
+ "time_encoder.2",
15
+ "condition_encoder.0",
16
+ "condition_encoder.3",
17
+ "context_mixer.2",
18
+ "down_blocks.0.input_projection",
19
+ "down_blocks.0.context_projection.1",
20
+ "down_blocks.1.input_projection",
21
+ "down_blocks.1.context_projection.1",
22
+ "down_blocks.2.input_projection",
23
+ "down_blocks.2.context_projection.1",
24
+ "down_blocks.3.input_projection",
25
+ "down_blocks.3.context_projection.1",
26
+ "up_blocks.0.input_projection",
27
+ "up_blocks.0.context_projection.1",
28
+ "up_blocks.1.input_projection",
29
+ "up_blocks.1.context_projection.1",
30
+ "up_blocks.2.input_projection",
31
+ "up_blocks.2.context_projection.1",
32
+ "output_trunk.0",
33
+ "value_head",
34
+ "active_head"
35
+ ],
36
+ "lora_rank": 16,
37
+ "lora_alpha": 16.0,
38
+ "n_trainable": 1296224,
39
+ "n_total_base": 54185184,
40
+ "trainable_tensors": 44
41
+ },
42
+ "lr": 0.0005,
43
+ "warmup": 200,
44
+ "batch_size": 256,
45
+ "ema_decay": 0.999,
46
+ "max_steps": 3000,
47
+ "steps_run": 3000,
48
+ "eval_every": 250,
49
+ "patience": 8,
50
+ "train_subset": null,
51
+ "train_donors_file": null,
52
+ "support_manifest": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/protocol/splits/ji2025_chili/disease/draw2/support.json",
53
+ "support_sha256": "fa20d986ff3869bc9b0a15ab6f16bae3a01a5f09a515f0a961146219c92595b4",
54
+ "train_donor_ids": [
55
+ "N032",
56
+ "N005",
57
+ "N018",
58
+ "N035",
59
+ "N147"
60
+ ],
61
+ "excluded_selected_donor_visits": [
62
+ "N005_AC",
63
+ "N018_AC",
64
+ "N032_BC"
65
+ ],
66
+ "fixed_steps": 3000,
67
+ "selected_step": 3000,
68
+ "selected_inner_val_loss": NaN,
69
+ "pretrained_inner_val_loss": NaN,
70
+ "train_rows": [
71
+ "N032_AC",
72
+ "N147_TOL",
73
+ "N005_BC",
74
+ "N018_BC",
75
+ "N035_TOL"
76
+ ],
77
+ "inner_val_rows": [],
78
+ "test_rows_never_loaded_for_training": [
79
+ "N064_TOL",
80
+ "N064_FU1",
81
+ "N038_BC",
82
+ "N038_AC",
83
+ "N055_AC",
84
+ "N136_TOL",
85
+ "N136_FU1",
86
+ "N138_TOL",
87
+ "N138_FU1",
88
+ "N128_BC",
89
+ "N128_AC",
90
+ "N129_BC",
91
+ "N129_AC",
92
+ "N150_BC",
93
+ "N158_AC",
94
+ "N159_BC",
95
+ "N001_TOL",
96
+ "N001_FU1",
97
+ "N002_TOL",
98
+ "N002_FU1",
99
+ "N012_TOL",
100
+ "N012_FU1",
101
+ "N022_TOL",
102
+ "N022_FU1",
103
+ "N043_TOL",
104
+ "N043_FU1"
105
+ ],
106
+ "max_abs_weight_change": 0.5055524706840515,
107
+ "n_tensors_changed": 22,
108
+ "seed": 20260927,
109
+ "wall_seconds": 105.7,
110
+ "written_utc": "2026-10-15T11:34:00.266490+00:00",
111
+ "support_expression_isolation": {
112
+ "schema": "pbisc.paper.support-expression-isolation.v1",
113
+ "support_manifest": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/protocol/splits/ji2025_chili/disease/draw2/support.json",
114
+ "support_sha256": "fa20d986ff3869bc9b0a15ab6f16bae3a01a5f09a515f0a961146219c92595b4",
115
+ "cohort": "ji2025_chili",
116
+ "unit": "draw2_n5",
117
+ "train_sample_ids": [
118
+ "N032_AC",
119
+ "N005_BC",
120
+ "N018_BC",
121
+ "N035_TOL",
122
+ "N147_TOL"
123
+ ],
124
+ "train_donor_ids": [
125
+ "N032",
126
+ "N005",
127
+ "N018",
128
+ "N035",
129
+ "N147"
130
+ ],
131
+ "source_cells": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/data/ji2025_chili/cells_panel6k.npz",
132
+ "source_cells_sha256": "86a539c63a4544c52a75cd614126bf2f2ee85ef3313763ccb89291e70573140b",
133
+ "source_folds_sha256": "bb85c351932230c5fa793f3139a9648360157690bd478c229361b3bf2ca4973d",
134
+ "isolated_cells": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/isolated/ji2025_chili/disease/draw2/cells_support_only.npz",
135
+ "isolated_cells_sha256": "42225b1acec0439d620e46803233e02ceeb51d5184621e5d6ab9c63003efba1b",
136
+ "builder_sha256": "762f5f7bbf908c478544b0c5c05a8fbf6c3bf63eff6a2d7af88105473c1c20a2",
137
+ "audit": {
138
+ "selected_sample_rows": [
139
+ 3,
140
+ 18,
141
+ 29,
142
+ 33,
143
+ 37
144
+ ],
145
+ "selected_cells": 21562,
146
+ "selected_nonzero_entries": 6829951,
147
+ "original_cell_rows": 154698,
148
+ "nonselected_expression_rows_empty": true,
149
+ "original_expression_ranges": [
150
+ [
151
+ 2959811,
152
+ 4570492
153
+ ],
154
+ [
155
+ 22146315,
156
+ 23479367
157
+ ],
158
+ [
159
+ 40118744,
160
+ 41936385
161
+ ],
162
+ [
163
+ 48162104,
164
+ 49297208
165
+ ],
166
+ [
167
+ 53264460,
168
+ 54197933
169
+ ]
170
+ ],
171
+ "cell_row_indexing": "unchanged original cell-row indices; non-support rows have empty CSR rows",
172
+ "data_sha256": "f0c13a95e1c4fac8f64194345f0662f1145f2fc4e3c3a1b8eaa72a33fa623077",
173
+ "indices_sha256": "499c5f2b7259f6da74e729b7a9f18b72c44a90d93a9ddebb1e9aaf9f493c0742"
174
+ },
175
+ "expression_access": "Only selected CSR ranges interpreted. Nonselected compressed bytes may be streamed and discarded.",
176
+ "target_sc_aggregate_keys_accessed": [],
177
+ "permitted_all_row_metadata": [
178
+ "indptr",
179
+ "row_sample",
180
+ "shape",
181
+ "panel_gene_ids",
182
+ "panel_measured"
183
+ ]
184
+ },
185
+ "checkpoint_sha256": "2f29a930b31c4e7b8c02c7654fbd0d6f3c5d3b607587eab42c3fbf0709becfa9",
186
+ "reload_forward_max_abs_diff": 0.0
187
+ }