Archive 4 checkpoints (1-4)

paper-releases/pbisc-diffusion/updates/20261003T103040Z-crosscohort-k1000-saturation/diffusion/dataset/server_1/model8/plans/paired_crosscohort_20261002/scores/ji2025_chili/zs_K2000/contrast.csv

@@ -0,0 +1,14 @@
+arm,celltype,statistic,n_genes,r_generated,r_broadcast,partial_r_generated_given_broadcast,r_generated_vs_broadcast,n_case_donors_obs,n_control_donors_obs,n_case_donors_gen,n_control_donors_gen,n_cells_obs,n_cells_gen,deg_scored,top50_overlap,top50_jaccard,obs_top_list_size,gen_top_list_size,n_sig_obs,n_sig_gen,top50_overlap_broadcast,top50_jaccard_broadcast,broadcast_top_list_size,n_sig_broadcast
+zs_K2000,T cell,mean_cp10k,3021,0.1936892620414042,0.22039608693345034,0.1449729100653414,0.2591304649330203,18,15,18,15,59396,14017,,,,,,,,,,,
+zs_K2000,T cell,pseudobulk_log1p_cpm,3021,0.09309011058330038,0.27145331834905573,0.06007634556783015,0.1317863347579998,18,15,18,15,59396,14017,,,,,,,,,,,
+zs_K2000,B cell,mean_cp10k,3245,-0.09002164769373328,0.13326750229861392,-0.10945184189953557,0.13141355027115617,18,15,18,15,7162,2717,,,,,,,,,,,
+zs_K2000,B cell,pseudobulk_log1p_cpm,3245,-0.11044096924586269,0.01993963216355321,-0.1119383831715454,0.06287568369059664,18,15,18,15,7162,2717,,,,,,,,,,,
+zs_K2000,Monocyte,mean_cp10k,3154,0.21179981613254145,0.3983317004681723,0.10578211402159825,0.2992979412168947,18,15,18,15,34457,27557,,,,,,,,,,,
+zs_K2000,Monocyte,pseudobulk_log1p_cpm,3154,0.18744029889058536,0.35676796217145185,0.12991257836877662,0.19150578972346144,18,15,18,15,34457,27557,,,,,,,,,,,
+zs_K2000,NK cell,mean_cp10k,3051,-0.013048483527535343,0.20750320008350984,-0.04990304643455245,0.168991522253339,18,15,18,15,18147,1255,,,,,,,,,,,
+zs_K2000,NK cell,pseudobulk_log1p_cpm,3051,0.02672365250213676,0.10364196133517908,0.015284658551367547,0.11208885907299672,18,15,18,15,18147,1255,,,,,,,,,,,
+zs_K2000,T cell,welch_top50_deg,5752,,,,,18,15,18,15,59396,14017,True,0,0.0,50,0,1897,0,0,0.0,15,15
+zs_K2000,B cell,welch_top50_deg,5752,,,,,18,15,18,15,7162,2717,True,0,0.0,50,0,73,0,1,0.015625,15,15
+zs_K2000,Monocyte,welch_top50_deg,5752,,,,,18,15,18,15,34457,27557,True,0,0.0,50,1,346,1,2,0.031746031746031744,15,15
+zs_K2000,NK cell,welch_top50_deg,5752,,,,,18,15,18,15,18147,1255,True,0,0.0,50,0,396,0,1,0.015625,15,15
+zs_K2000,DC,welch_top50_deg,5752,,,,,16,15,18,15,1755,253,True,0,0.0,50,0,138,0,0,0.0,15,15

paper-releases/pbisc-diffusion/updates/20261003T103040Z-crosscohort-k1000-saturation/diffusion/dataset/server_1/model8/plans/paired_crosscohort_20261002/scores/ji2025_chili/zs_K2000/per_donor.csv

@@ -0,0 +1,34 @@
+arm,donor,group,n_generated_cells,n_observed_cells,n_reference_cells,gen_T cell,obs_T cell,gen_B cell,obs_B cell,gen_Monocyte,obs_Monocyte,gen_NK cell,obs_NK cell,gen_DC,obs_DC,gen_Other,obs_Other,comp_l1,comp_l1_obs_loo_null,pb_r,pb_own_rank,pb_top1,precision,coverage,precision_depth_matched,coverage_depth_matched,mono_pct_gen,mono_pct_obs,median_umi_gen,median_umi_obs
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+zs_K2000,N138_TOL,TOL,1500,5129,150,0.228,0.13803860401637746,0.062,0.02807564827451745,0.606,0.5878338857477091,0.013333333333333334,0.17703255995320724,0.006666666666666667,0.006044063170208618,0.084,0.06297523883798012,0.3273984532397478,0.7925802602508564,0.8267587964320415,16,False,0.7133333333333334,0.04666666666666667,0.4266666666666667,0.11333333333333333,60.6,58.78338857477091,396.0,1117.0
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+zs_K2000,N128_AC,AC,1500,2713,150,0.25266666666666665,0.5488389237007003,0.06733333333333333,0.06524143015112421,0.568,0.2790269074824917,0.026,0.07077036490969407,0.005333333333333333,0.029487652045705862,0.08066666666666666,0.006634721710283818,0.7301938813122005,0.23334452587077809,0.8417311435887953,5,False,0.6866666666666666,0.06,0.4066666666666667,0.14666666666666667,56.8,27.90269074824917,399.0,1181.0
+zs_K2000,N129_BC,BC,1500,3087,150,0.256,0.5963718820861678,0.062,0.11305474570780694,0.584,0.08357628765792031,0.025333333333333333,0.18140589569160998,0.0026666666666666666,0.013281503077421444,0.07,0.012309685779073534,1.116228053126012,0.42589167542025136,0.8246340602258316,26,False,0.7,0.04666666666666667,0.44,0.14666666666666667,58.4,8.35762876579203,432.0,1059.0
+zs_K2000,N129_AC,AC,1500,2798,150,0.29133333333333333,0.7076483202287348,0.06133333333333333,0.04932094353109364,0.5313333333333333,0.07969978556111508,0.03133333333333333,0.13366690493209435,0.004666666666666667,0.0228734810578985,0.08,0.006790564689063617,1.0737107457707886,0.4965696459014902,0.8180873698275793,31,False,0.6933333333333334,0.08666666666666667,0.43333333333333335,0.1,53.13333333333333,7.969978556111508,407.0,759.0
+zs_K2000,N147_TOL,TOL,1500,3210,150,0.24666666666666667,0.44205607476635517,0.06133333333333333,0.00809968847352025,0.6133333333333333,0.4193146417445483,0.021333333333333333,0.07102803738317758,0.006666666666666667,0.0065420560747663555,0.050666666666666665,0.0529595015576324,0.4947538940809968,0.36540380452880195,0.8637228296036047,1,True,0.78,0.10666666666666667,0.58,0.3333333333333333,61.33333333333333,41.93146417445483,603.0,1461.5
+zs_K2000,N150_BC,BC,1500,2433,150,0.26866666666666666,0.802301685162351,0.05533333333333333,0.02301685162351007,0.562,0.1385121249486231,0.030666666666666665,0.02178380600082203,0.004,0.005754212905877518,0.07933333333333334,0.008631319358816275,1.070778462803124,0.6657432679854348,0.8427330019744416,13,False,0.7133333333333334,0.013333333333333334,0.4,0.17333333333333334,56.2,13.851212494862311,439.0,1629.0
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paper-releases/pbisc-diffusion/updates/20261003T103040Z-crosscohort-k1000-saturation/diffusion/dataset/server_1/model8/plans/paired_crosscohort_20261002/scores/ji2025_chili/zs_K2000/summary.json

@@ -0,0 +1,569 @@
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+}

paper-releases/pbisc-diffusion/updates/20261003T103040Z-crosscohort-k1000-saturation/diffusion/dataset/server_1/model8/plans/paired_crosscohort_20261002/scores/k1000_saturated_summary.csv

@@ -0,0 +1,31 @@
+cohort,arm,steps,L1,cov,logFC_r,DEG50
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